Wall clock time and date at job start Tue Mar 31 2020 05:33:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.31544 * 118.64545 * 2 1 4 4 C 1.33200 * 120.71253 * 180.27852 * 3 2 1 5 5 N 1.36779 * 134.29489 * 180.02562 * 4 3 2 6 6 H 0.96992 * 124.99207 * 359.96223 * 5 4 3 7 7 C 1.37100 * 110.01980 * 179.97438 * 5 4 3 8 8 C 1.34309 * 109.81176 * 359.97438 * 7 5 4 9 9 C 1.40725 * 118.55069 * 0.02562 * 4 3 2 10 10 C 1.40296 * 118.66538 * 359.97438 * 9 4 3 11 11 N 1.38329 * 120.83876 * 179.97438 * 10 9 4 12 12 C 1.46503 * 120.00120 * 180.02562 * 11 10 9 13 13 H 1.09004 * 109.40977 * 35.14515 * 12 11 10 14 14 C 1.52955 * 109.41465 * 155.00171 * 12 11 10 15 15 C 1.53222 * 109.40770 * 183.70649 * 14 12 11 16 16 C 1.51277 * 108.53759 * 305.37622 * 15 14 12 17 17 C 1.37869 * 120.84912 * 231.32539 * 16 15 14 18 18 N 1.31519 * 120.00623 * 359.97438 * 17 16 15 19 19 Si 1.86797 * 120.00076 * 179.97438 * 17 16 15 20 20 H 1.48501 * 109.47239 * 89.99778 * 19 17 16 21 21 H 1.48503 * 109.47285 * 209.99833 * 19 17 16 22 22 H 1.48503 * 109.46914 * 329.99730 * 19 17 16 23 23 C 1.51267 * 118.29960 * 51.34362 * 16 15 14 24 24 C 1.52952 * 109.41596 * 275.35845 * 12 11 10 25 25 N 1.32084 * 118.64022 * 180.27307 * 2 1 3 26 26 H 1.09004 * 109.46797 * 269.72929 * 1 2 3 27 27 H 1.08998 * 109.46980 * 29.72531 * 1 2 3 28 28 H 1.08995 * 109.47071 * 149.73105 * 1 2 3 29 29 H 1.07998 * 125.09144 * 180.02562 * 7 5 4 30 30 H 1.07997 * 126.59300 * 179.97438 * 8 7 5 31 31 H 0.97001 * 119.99823 * 0.02777 * 11 10 9 32 32 H 1.09005 * 109.48327 * 303.69045 * 14 12 11 33 33 H 1.09005 * 109.47956 * 63.72846 * 14 12 11 34 34 H 1.08999 * 109.62816 * 65.09026 * 15 14 12 35 35 H 1.08999 * 109.63162 * 185.46770 * 15 14 12 36 36 H 0.96991 * 120.00358 * 180.02562 * 18 17 16 37 37 H 1.09004 * 109.62360 * 68.36722 * 23 16 15 38 38 H 1.08996 * 109.62949 * 188.74404 * 23 16 15 39 39 H 1.08994 * 109.48828 * 296.27653 * 24 12 11 40 40 H 1.09005 * 109.48537 * 56.31709 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1376 1.1544 0.0000 4 6 3.4688 1.2025 -0.0056 5 7 4.3880 2.2153 -0.0067 6 1 4.1735 3.1612 -0.0037 7 6 5.6573 1.6971 -0.0130 8 6 5.6012 0.3552 -0.0155 9 6 4.1855 -0.0086 -0.0120 10 6 3.4689 -1.2147 -0.0117 11 7 4.1277 -2.4310 -0.0184 12 6 3.3610 -3.6794 -0.0186 13 1 2.4524 -3.5464 -0.6058 14 6 4.2062 -4.7950 -0.6355 15 6 3.3725 -6.0777 -0.7205 16 6 2.8336 -6.3932 0.6574 17 6 3.0001 -7.6444 1.2122 18 7 3.6338 -8.5820 0.5421 19 14 2.3256 -8.0079 2.9158 20 1 0.9355 -8.5171 2.7995 21 1 3.1744 -9.0321 3.5761 22 1 2.3308 -6.7635 3.7261 23 6 2.1071 -5.3010 1.4107 24 6 2.9869 -4.0465 1.4183 25 7 2.1401 -1.1592 -0.0055 26 1 -0.3633 -0.0049 1.0277 27 1 -0.3633 0.8924 -0.5096 28 1 -0.3633 -0.8875 -0.5180 29 1 6.5661 2.2806 -0.0147 30 1 6.4406 -0.3243 -0.0208 31 1 5.0974 -2.4573 -0.0230 32 1 4.5229 -4.5003 -1.6360 33 1 5.0838 -4.9724 -0.0137 34 1 2.5436 -5.9305 -1.4128 35 1 3.9987 -6.8991 -1.0687 36 1 3.7505 -9.4622 0.9323 37 1 1.1611 -5.0818 0.9156 38 1 1.9181 -5.6254 2.4340 39 1 3.8931 -4.2415 1.9915 40 1 2.4391 -3.2212 1.8735 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001157049769.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:05 Heat of formation + Delta-G solvation = 69.265596 kcal Electronic energy + Delta-G solvation = -22386.706985 eV Core-core repulsion = 19201.188977 eV Total energy + Delta-G solvation = -3185.518009 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 286.149 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.62142 -38.76700 -37.51016 -34.94102 -32.45564 -31.67600 -30.77901 -30.31310 -29.58634 -27.49401 -26.62325 -23.37850 -22.13484 -21.63596 -21.31205 -20.56603 -19.55643 -18.79920 -16.92270 -16.27303 -16.01835 -15.44931 -15.25533 -14.43704 -14.05849 -13.78450 -13.64379 -13.34084 -13.30006 -12.95023 -12.87371 -12.55652 -12.22940 -12.17357 -12.01809 -11.55014 -11.14615 -10.93430 -10.70498 -10.53786 -10.46895 -10.08705 -9.95780 -9.49075 -9.03767 -8.95256 -8.86267 -8.76611 -8.51700 -8.43101 -7.33274 -6.09120 -3.99653 1.24330 1.73133 2.67250 2.74636 3.28945 3.37182 3.38649 3.48324 4.20082 4.37015 4.39907 4.65830 4.78001 5.05572 5.17669 5.20530 5.57259 5.61192 5.72721 5.75474 5.80924 5.92393 5.98115 6.24674 6.33212 6.40466 6.50977 6.64275 6.74767 6.81865 6.93008 6.98856 7.04298 7.09543 7.17207 7.41766 7.47377 7.59601 7.68206 7.72765 7.83331 8.01324 8.39461 8.72019 8.97524 9.56013 11.00449 Molecular weight = 286.15amu Principal moments of inertia in cm(-1) A = 0.024352 B = 0.004210 C = 0.003894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1149.511217 B = 6649.736888 C = 7188.829733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.384 3.616 3 N -0.588 5.588 4 C 0.344 3.656 5 N -0.574 5.574 6 H 0.417 0.583 7 C 0.022 3.978 8 C -0.157 4.157 9 C -0.281 4.281 10 C 0.498 3.502 11 N -0.691 5.691 12 C 0.160 3.840 13 H 0.084 0.916 14 C -0.116 4.116 15 C 0.014 3.986 16 C -0.486 4.486 17 C 0.076 3.924 18 N -0.892 5.892 19 Si 0.886 3.114 20 H -0.278 1.278 21 H -0.291 1.291 22 H -0.264 1.264 23 C -0.018 4.018 24 C -0.110 4.110 25 N -0.590 5.590 26 H 0.082 0.918 27 H 0.079 0.921 28 H 0.086 0.914 29 H 0.175 0.825 30 H 0.147 0.853 31 H 0.405 0.595 32 H 0.035 0.965 33 H 0.053 0.947 34 H 0.006 0.994 35 H 0.060 0.940 36 H 0.264 0.736 37 H 0.020 0.980 38 H 0.034 0.966 39 H 0.047 0.953 40 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.337 18.769 -1.091 18.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.113 3.887 3 N -0.316 5.316 4 C 0.106 3.894 5 N -0.181 5.181 6 H 0.254 0.746 7 C -0.102 4.102 8 C -0.184 4.184 9 C -0.295 4.295 10 C 0.248 3.752 11 N -0.318 5.318 12 C 0.057 3.943 13 H 0.102 0.898 14 C -0.154 4.154 15 C -0.023 4.023 16 C -0.505 4.505 17 C -0.127 4.127 18 N -0.530 5.530 19 Si 0.715 3.285 20 H -0.204 1.204 21 H -0.217 1.217 22 H -0.190 1.190 23 C -0.056 4.056 24 C -0.149 4.149 25 N -0.320 5.320 26 H 0.101 0.899 27 H 0.098 0.902 28 H 0.105 0.895 29 H 0.192 0.808 30 H 0.164 0.836 31 H 0.240 0.760 32 H 0.053 0.947 33 H 0.072 0.928 34 H 0.025 0.975 35 H 0.078 0.922 36 H 0.074 0.926 37 H 0.038 0.962 38 H 0.052 0.948 39 H 0.065 0.935 40 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 1.393 18.540 -1.091 18.624 hybrid contribution 1.113 0.229 0.996 1.511 sum 2.506 18.769 -0.094 18.936 Atomic orbital electron populations 1.20493 0.86000 1.03691 1.03577 1.22535 0.96943 0.81420 0.87821 1.67150 1.05886 1.30811 1.27778 1.18096 0.88312 0.86596 0.96429 1.41402 1.04131 1.07776 1.64832 0.74584 1.21699 0.86443 0.94421 1.07634 1.21454 0.94034 0.94318 1.08561 1.19883 0.95572 0.93514 1.20496 1.18065 0.87952 0.84847 0.84370 1.45191 1.08722 1.03051 1.74876 1.21128 0.94782 0.80421 0.97930 0.89842 1.21954 0.99158 0.96966 0.97353 1.19322 0.94931 0.92281 0.95804 1.20062 1.34641 0.94820 1.01007 1.24837 0.94664 0.95705 0.97461 1.69833 1.41465 1.03724 1.37948 0.86687 0.79062 0.77745 0.85025 1.20375 1.21738 1.18966 1.19778 0.95299 0.93258 0.97230 1.21872 0.99878 0.98280 0.94852 1.68005 1.06891 1.29284 1.27776 0.89937 0.90184 0.89508 0.80787 0.83554 0.75974 0.94671 0.92833 0.97523 0.92186 0.92635 0.96167 0.94774 0.93450 0.94411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.96 10.29 36.01 0.37 -0.59 16 2 C 0.38 6.21 7.63 -157.16 -1.20 5.01 16 3 N -0.59 -9.42 10.35 -10.04 -0.10 -9.53 16 4 C 0.34 5.19 8.48 -155.85 -1.32 3.87 16 5 N -0.57 -6.20 6.03 -12.13 -0.07 -6.27 16 6 H 0.42 3.24 8.96 -40.82 -0.37 2.87 16 7 C 0.02 0.21 11.83 -16.58 -0.20 0.01 16 8 C -0.16 -1.85 10.98 -37.79 -0.41 -2.26 16 9 C -0.28 -4.35 6.32 -105.00 -0.66 -5.02 16 10 C 0.50 8.63 7.52 -154.73 -1.16 7.47 16 11 N -0.69 -11.56 5.20 -53.70 -0.28 -11.84 16 12 C 0.16 3.12 2.38 -67.98 -0.16 2.95 16 13 H 0.08 1.76 7.58 -51.93 -0.39 1.36 16 14 C -0.12 -2.36 5.40 -26.64 -0.14 -2.51 16 15 C 0.01 0.35 5.96 -27.49 -0.16 0.19 16 16 C -0.49 -12.65 5.51 -98.92 -0.55 -13.19 16 17 C 0.08 2.05 5.46 -17.82 -0.10 1.95 16 18 N -0.89 -25.41 12.74 55.43 0.71 -24.71 16 19 Si 0.89 21.05 27.53 -169.99 -4.68 16.38 16 20 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 21 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 22 H -0.26 -6.12 6.11 56.52 0.35 -5.77 16 23 C -0.02 -0.41 5.59 -27.49 -0.15 -0.57 16 24 C -0.11 -2.31 5.51 -26.64 -0.15 -2.45 16 25 N -0.59 -10.62 9.25 -9.83 -0.09 -10.72 16 26 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 27 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 28 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 29 H 0.18 0.88 8.06 -52.49 -0.42 0.46 16 30 H 0.15 1.40 8.06 -52.49 -0.42 0.97 16 31 H 0.40 5.85 8.53 -40.82 -0.35 5.50 16 32 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 34 H 0.01 0.16 8.14 -51.93 -0.42 -0.27 16 35 H 0.06 1.60 7.08 -51.93 -0.37 1.23 16 36 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 37 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 38 H 0.03 0.80 4.59 -51.93 -0.24 0.56 16 39 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 40 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 LS Contribution 324.75 15.07 4.89 4.89 Total: -1.00 -31.28 324.75 -11.18 -42.46 By element: Atomic # 1 Polarization: 10.02 SS G_CDS: -5.56 Total: 4.46 kcal Atomic # 6 Polarization: 0.87 SS G_CDS: -6.00 Total: -5.13 kcal Atomic # 7 Polarization: -63.22 SS G_CDS: 0.16 Total: -63.06 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -4.68 Total: 16.38 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -31.28 -11.18 -42.46 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157049769.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.724 kcal (2) G-P(sol) polarization free energy of solvation -31.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.459 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds