Wall clock time and date at job start Tue Mar 31 2020 05:33:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.31544 * 118.64545 * 2 1 4 4 C 1.33200 * 120.71253 * 180.27852 * 3 2 1 5 5 N 1.36779 * 134.29489 * 180.02562 * 4 3 2 6 6 H 0.96992 * 124.99207 * 359.96223 * 5 4 3 7 7 C 1.37100 * 110.01980 * 179.97438 * 5 4 3 8 8 C 1.34309 * 109.81176 * 359.97438 * 7 5 4 9 9 C 1.40725 * 118.55069 * 0.02562 * 4 3 2 10 10 C 1.40296 * 118.66538 * 359.97438 * 9 4 3 11 11 N 1.38329 * 120.83876 * 179.97438 * 10 9 4 12 12 C 1.46503 * 120.00120 * 180.02562 * 11 10 9 13 13 H 1.09004 * 109.40977 * 35.14515 * 12 11 10 14 14 C 1.52955 * 109.41465 * 155.00171 * 12 11 10 15 15 C 1.53222 * 109.40770 * 183.70649 * 14 12 11 16 16 C 1.51277 * 108.53759 * 305.37622 * 15 14 12 17 17 C 1.37869 * 120.84912 * 231.32539 * 16 15 14 18 18 N 1.31519 * 120.00623 * 359.97438 * 17 16 15 19 19 Si 1.86797 * 120.00076 * 179.97438 * 17 16 15 20 20 H 1.48501 * 109.47239 * 89.99778 * 19 17 16 21 21 H 1.48503 * 109.47285 * 209.99833 * 19 17 16 22 22 H 1.48503 * 109.46914 * 329.99730 * 19 17 16 23 23 C 1.51267 * 118.29960 * 51.34362 * 16 15 14 24 24 C 1.52952 * 109.41596 * 275.35845 * 12 11 10 25 25 N 1.32084 * 118.64022 * 180.27307 * 2 1 3 26 26 H 1.09004 * 109.46797 * 269.72929 * 1 2 3 27 27 H 1.08998 * 109.46980 * 29.72531 * 1 2 3 28 28 H 1.08995 * 109.47071 * 149.73105 * 1 2 3 29 29 H 1.07998 * 125.09144 * 180.02562 * 7 5 4 30 30 H 1.07997 * 126.59300 * 179.97438 * 8 7 5 31 31 H 0.97001 * 119.99823 * 0.02777 * 11 10 9 32 32 H 1.09005 * 109.48327 * 303.69045 * 14 12 11 33 33 H 1.09005 * 109.47956 * 63.72846 * 14 12 11 34 34 H 1.08999 * 109.62816 * 65.09026 * 15 14 12 35 35 H 1.08999 * 109.63162 * 185.46770 * 15 14 12 36 36 H 0.96991 * 120.00358 * 180.02562 * 18 17 16 37 37 H 1.09004 * 109.62360 * 68.36722 * 23 16 15 38 38 H 1.08996 * 109.62949 * 188.74404 * 23 16 15 39 39 H 1.08994 * 109.48828 * 296.27653 * 24 12 11 40 40 H 1.09005 * 109.48537 * 56.31709 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1376 1.1544 0.0000 4 6 3.4688 1.2025 -0.0056 5 7 4.3880 2.2153 -0.0067 6 1 4.1735 3.1612 -0.0037 7 6 5.6573 1.6971 -0.0130 8 6 5.6012 0.3552 -0.0155 9 6 4.1855 -0.0086 -0.0120 10 6 3.4689 -1.2147 -0.0117 11 7 4.1277 -2.4310 -0.0184 12 6 3.3610 -3.6794 -0.0186 13 1 2.4524 -3.5464 -0.6058 14 6 4.2062 -4.7950 -0.6355 15 6 3.3725 -6.0777 -0.7205 16 6 2.8336 -6.3932 0.6574 17 6 3.0001 -7.6444 1.2122 18 7 3.6338 -8.5820 0.5421 19 14 2.3256 -8.0079 2.9158 20 1 0.9355 -8.5171 2.7995 21 1 3.1744 -9.0321 3.5761 22 1 2.3308 -6.7635 3.7261 23 6 2.1071 -5.3010 1.4107 24 6 2.9869 -4.0465 1.4183 25 7 2.1401 -1.1592 -0.0055 26 1 -0.3633 -0.0049 1.0277 27 1 -0.3633 0.8924 -0.5096 28 1 -0.3633 -0.8875 -0.5180 29 1 6.5661 2.2806 -0.0147 30 1 6.4406 -0.3243 -0.0208 31 1 5.0974 -2.4573 -0.0230 32 1 4.5229 -4.5003 -1.6360 33 1 5.0838 -4.9724 -0.0137 34 1 2.5436 -5.9305 -1.4128 35 1 3.9987 -6.8991 -1.0687 36 1 3.7505 -9.4622 0.9323 37 1 1.1611 -5.0818 0.9156 38 1 1.9181 -5.6254 2.4340 39 1 3.8931 -4.2415 1.9915 40 1 2.4391 -3.2212 1.8735 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001157049769.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:05 Heat of formation + Delta-G solvation = 50.982767 kcal Electronic energy + Delta-G solvation = -22387.499788 eV Core-core repulsion = 19201.188977 eV Total energy + Delta-G solvation = -3186.310812 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 286.149 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.65993 -39.92929 -38.99802 -36.46109 -34.15961 -32.87322 -32.13485 -31.47946 -31.22320 -28.99342 -27.84561 -24.78727 -23.50157 -23.23535 -22.87381 -21.49330 -21.15445 -19.98545 -18.24211 -17.97142 -17.04717 -16.70191 -16.53756 -16.38274 -15.39206 -15.08397 -14.83304 -14.68686 -14.51934 -14.32326 -14.11854 -14.01151 -13.80894 -13.62988 -13.18100 -13.11971 -12.76526 -12.63091 -12.49975 -12.04585 -11.90950 -11.78469 -11.51399 -11.31840 -10.86098 -10.61810 -10.52196 -10.04142 -10.00424 -9.80039 -8.45719 -8.15127 -6.08991 0.14821 0.56725 1.40032 1.42977 1.50771 1.79076 1.84191 2.21057 2.42624 3.02775 3.12706 3.31646 3.65452 3.85972 4.01241 4.08636 4.24348 4.33825 4.56209 4.62221 4.73067 4.79136 4.81680 4.83238 4.96066 5.00395 5.04401 5.10313 5.21613 5.28785 5.29005 5.46229 5.49463 5.59324 5.64233 5.77504 5.81922 5.91517 5.96073 6.28026 6.37045 6.51550 6.87275 6.96497 7.49047 7.54183 8.95561 Molecular weight = 286.15amu Principal moments of inertia in cm(-1) A = 0.024352 B = 0.004210 C = 0.003894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1149.511217 B = 6649.736888 C = 7188.829733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.360 3.640 3 N -0.591 5.591 4 C 0.314 3.686 5 N -0.561 5.561 6 H 0.433 0.567 7 C 0.057 3.943 8 C -0.186 4.186 9 C -0.292 4.292 10 C 0.476 3.524 11 N -0.689 5.689 12 C 0.179 3.821 13 H 0.066 0.934 14 C -0.102 4.102 15 C 0.011 3.989 16 C -0.496 4.496 17 C 0.025 3.975 18 N -0.930 5.930 19 Si 0.937 3.063 20 H -0.275 1.275 21 H -0.291 1.291 22 H -0.253 1.253 23 C -0.018 4.018 24 C -0.100 4.100 25 N -0.616 5.616 26 H 0.092 0.908 27 H 0.096 0.904 28 H 0.085 0.915 29 H 0.227 0.773 30 H 0.166 0.834 31 H 0.415 0.585 32 H 0.054 0.946 33 H 0.052 0.948 34 H -0.001 1.001 35 H 0.031 0.969 36 H 0.263 0.737 37 H 0.019 0.981 38 H 0.033 0.967 39 H 0.044 0.956 40 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.379 21.654 -0.453 21.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.089 3.911 3 N -0.319 5.319 4 C 0.075 3.925 5 N -0.169 5.169 6 H 0.273 0.727 7 C -0.068 4.068 8 C -0.211 4.211 9 C -0.306 4.306 10 C 0.227 3.773 11 N -0.319 5.319 12 C 0.075 3.925 13 H 0.084 0.916 14 C -0.141 4.141 15 C -0.027 4.027 16 C -0.515 4.515 17 C -0.174 4.174 18 N -0.571 5.571 19 Si 0.764 3.236 20 H -0.201 1.201 21 H -0.218 1.218 22 H -0.178 1.178 23 C -0.056 4.056 24 C -0.139 4.139 25 N -0.347 5.347 26 H 0.111 0.889 27 H 0.114 0.886 28 H 0.104 0.896 29 H 0.244 0.756 30 H 0.184 0.816 31 H 0.253 0.747 32 H 0.073 0.927 33 H 0.071 0.929 34 H 0.018 0.982 35 H 0.050 0.950 36 H 0.072 0.928 37 H 0.037 0.963 38 H 0.052 0.948 39 H 0.063 0.937 40 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 2.431 21.500 -0.451 21.642 hybrid contribution 0.832 -0.503 0.728 1.215 sum 3.263 20.997 0.277 21.251 Atomic orbital electron populations 1.20563 0.83875 1.04408 1.04415 1.23156 0.98372 0.81181 0.88351 1.67196 1.06684 1.30666 1.27357 1.18464 0.88473 0.87960 0.97643 1.41550 1.03906 1.08048 1.63417 0.72727 1.22561 0.87078 0.94075 1.03091 1.21799 0.92802 0.95896 1.10627 1.20207 0.97676 0.92845 1.19908 1.18289 0.88234 0.85414 0.85367 1.44785 1.08918 1.02005 1.76153 1.20633 0.94207 0.81347 0.96351 0.91565 1.21717 0.98359 0.95333 0.98674 1.19274 0.94806 0.93473 0.95160 1.20603 1.33902 0.95363 1.01610 1.25553 0.95325 0.95793 1.00697 1.69958 1.43443 1.04119 1.39533 0.85858 0.78398 0.77845 0.81502 1.20090 1.21797 1.17754 1.19770 0.95451 0.93653 0.96727 1.21725 0.99147 0.97019 0.96006 1.67985 1.07686 1.30478 1.28505 0.88924 0.88566 0.89628 0.75631 0.81630 0.74711 0.92724 0.92896 0.98232 0.94986 0.92810 0.96270 0.94814 0.93721 0.94121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.75 10.29 71.24 0.73 -1.02 16 2 C 0.36 11.52 7.63 138.74 1.06 12.58 16 3 N -0.59 -18.36 10.35 -185.69 -1.92 -20.28 16 4 C 0.31 8.90 8.48 133.96 1.14 10.03 16 5 N -0.56 -10.18 6.03 -192.30 -1.16 -11.34 16 6 H 0.43 5.13 8.96 -92.71 -0.83 4.30 16 7 C 0.06 0.80 11.83 82.97 0.98 1.78 16 8 C -0.19 -3.78 10.98 23.43 0.26 -3.52 16 9 C -0.29 -8.60 6.32 -20.11 -0.13 -8.73 16 10 C 0.48 16.22 7.52 133.40 1.00 17.22 16 11 N -0.69 -22.50 5.20 -323.80 -1.68 -24.18 16 12 C 0.18 6.91 2.38 44.96 0.11 7.01 16 13 H 0.07 2.81 7.58 -2.39 -0.02 2.79 16 14 C -0.10 -4.16 5.40 30.65 0.17 -3.99 16 15 C 0.01 0.54 5.96 30.11 0.18 0.72 16 16 C -0.50 -26.08 5.51 -16.17 -0.09 -26.17 16 17 C 0.02 1.35 5.46 84.65 0.46 1.81 16 18 N -0.93 -54.37 12.74 21.45 0.27 -54.10 16 19 Si 0.94 43.41 27.53 68.60 1.89 45.29 16 20 H -0.28 -12.53 7.11 99.48 0.71 -11.83 16 21 H -0.29 -13.42 7.11 99.48 0.71 -12.71 16 22 H -0.25 -11.13 6.11 99.48 0.61 -10.52 16 23 C -0.02 -0.84 5.59 30.11 0.17 -0.67 16 24 C -0.10 -4.14 5.51 30.66 0.17 -3.97 16 25 N -0.62 -22.17 9.25 -185.02 -1.71 -23.88 16 26 H 0.09 1.95 8.14 -2.39 -0.02 1.94 16 27 H 0.10 1.89 8.14 -2.39 -0.02 1.87 16 28 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 29 H 0.23 0.77 8.06 -2.91 -0.02 0.75 16 30 H 0.17 2.61 8.06 -2.91 -0.02 2.59 16 31 H 0.42 11.48 8.53 -92.71 -0.79 10.69 16 32 H 0.05 1.99 8.14 -2.38 -0.02 1.97 16 33 H 0.05 2.15 8.14 -2.38 -0.02 2.13 16 34 H 0.00 -0.04 8.14 -2.39 -0.02 -0.06 16 35 H 0.03 1.75 7.08 -2.39 -0.02 1.74 16 36 H 0.26 14.63 8.31 -92.72 -0.77 13.86 16 37 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 38 H 0.03 1.56 4.59 -2.39 -0.01 1.55 16 39 H 0.04 1.86 8.14 -2.39 -0.02 1.84 16 40 H 0.04 1.66 8.14 -2.38 -0.02 1.64 16 Total: -1.00 -69.29 324.75 1.25 -68.04 By element: Atomic # 1 Polarization: 18.02 SS G_CDS: -0.64 Total: 17.38 kcal Atomic # 6 Polarization: -3.13 SS G_CDS: 6.20 Total: 3.07 kcal Atomic # 7 Polarization: -127.58 SS G_CDS: -6.21 Total: -133.79 kcal Atomic # 14 Polarization: 43.41 SS G_CDS: 1.89 Total: 45.29 kcal Total: -69.29 1.25 -68.04 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157049769.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.024 kcal (2) G-P(sol) polarization free energy of solvation -69.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.041 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds