Wall clock time and date at job start Tue Mar 31 2020 06:18:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86806 * 119.99793 * 2 1 4 4 H 1.48501 * 109.47006 * 0.02562 * 3 2 1 5 5 H 1.48497 * 109.46730 * 240.00119 * 3 2 1 6 6 H 1.48501 * 109.46733 * 120.00162 * 3 2 1 7 7 C 1.37874 * 120.00195 * 180.02562 * 2 1 3 8 8 C 1.51277 * 120.85039 * 5.23256 * 7 2 1 9 9 C 1.53654 * 108.31073 * 231.38468 * 8 7 2 10 10 C 1.52954 * 109.32943 * 305.13833 * 9 8 7 11 11 H 1.08998 * 109.35858 * 303.66402 * 10 9 8 12 12 N 1.46499 * 109.41887 * 183.83530 * 10 9 8 13 13 C 1.38997 * 120.00235 * 84.64553 * 12 10 9 14 14 C 1.39157 * 119.78824 * 0.02562 * 13 12 10 15 15 C 1.38063 * 118.76969 * 180.10287 * 14 13 12 16 16 C 1.39427 * 118.99779 * 359.89318 * 15 14 13 17 17 C 1.37465 * 119.30069 * 359.94529 * 16 15 14 18 18 N 1.32035 * 119.79605 * 179.73085 * 13 12 10 19 19 C 1.50741 * 122.35421 * 180.40956 * 17 16 15 20 20 C 1.52720 * 110.58520 * 342.10950 * 19 17 16 21 21 C 1.53326 * 108.41739 * 51.28260 * 20 19 17 22 22 C 1.50518 * 117.86181 * 179.71962 * 16 15 14 23 23 C 1.52958 * 109.81523 * 63.72895 * 10 9 8 24 24 C 1.51269 * 120.84967 * 184.96085 * 7 2 1 25 25 H 0.96998 * 119.99593 * 174.58148 * 1 2 3 26 26 H 1.09003 * 109.62398 * 351.04691 * 8 7 2 27 27 H 1.09001 * 109.62127 * 111.61104 * 8 7 2 28 28 H 1.09004 * 109.41364 * 185.24708 * 9 8 7 29 29 H 1.09003 * 109.63270 * 65.16470 * 9 8 7 30 30 H 0.97006 * 119.99872 * 264.65345 * 12 10 9 31 31 H 1.08002 * 120.61190 * 0.06985 * 14 13 12 32 32 H 1.08003 * 120.49953 * 179.88164 * 15 14 13 33 33 H 1.08995 * 109.25273 * 221.82670 * 19 17 16 34 34 H 1.08997 * 109.25763 * 102.39205 * 19 17 16 35 35 H 1.08998 * 109.67517 * 291.54827 * 20 19 17 36 36 H 1.09003 * 109.70169 * 171.03366 * 20 19 17 37 37 H 1.09000 * 109.68909 * 170.45672 * 21 20 19 38 38 H 1.09005 * 109.68811 * 49.88134 * 21 20 19 39 39 H 1.09001 * 109.25810 * 282.97537 * 22 16 15 40 40 H 1.09005 * 109.25563 * 42.40678 * 22 16 15 41 41 H 1.09006 * 109.48477 * 176.42054 * 23 10 9 42 42 H 1.09004 * 109.49320 * 56.39179 * 23 10 9 43 43 H 1.09001 * 109.62180 * 248.38294 * 24 7 2 44 44 H 1.08997 * 109.62793 * 8.76113 * 24 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 1.2841 2.7465 0.0006 5 1 3.1028 1.6964 -1.2125 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 6 1.2724 -2.5124 -0.1196 9 6 1.7422 -3.4301 1.0198 10 6 3.2664 -3.5502 0.9774 11 1 3.5732 -3.9115 -0.0042 12 7 3.7092 -4.4962 2.0047 13 6 3.7198 -5.8598 1.7357 14 6 3.3094 -6.3217 0.4888 15 6 3.3263 -7.6805 0.2450 16 6 3.7552 -8.5428 1.2531 17 6 4.1509 -8.0208 2.4617 18 7 4.1247 -6.7083 2.6627 19 6 4.6352 -8.8882 3.5954 20 6 4.2095 -10.3392 3.3810 21 6 4.6312 -10.7642 1.9695 22 6 3.7572 -10.0196 0.9620 23 6 3.9018 -2.1833 1.2372 24 6 3.5129 -1.2189 0.1118 25 1 -0.4849 -0.8363 -0.0793 26 1 0.1988 -2.3438 -0.0365 27 1 1.5002 -2.9721 -1.0813 28 1 1.2962 -4.4171 0.8974 29 1 1.4372 -3.0095 1.9781 30 1 3.9950 -4.1708 2.8727 31 1 2.9831 -5.6300 -0.2738 32 1 3.0118 -8.0696 -0.7122 33 1 4.2129 -8.5244 4.5320 34 1 5.7227 -8.8369 3.6481 35 1 3.1274 -10.4228 3.4816 36 1 4.6969 -10.9778 4.1177 37 1 4.4920 -11.8390 1.8527 38 1 5.6783 -10.5091 1.8066 39 1 2.7372 -10.3991 1.0212 40 1 4.1446 -10.1873 -0.0430 41 1 4.9865 -2.2866 1.2689 42 1 3.5459 -1.7921 2.1904 43 1 3.9444 -1.5610 -0.8289 44 1 3.8796 -0.2182 0.3402 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001157049984.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:37 Heat of formation + Delta-G solvation = 1.621755 kcal Electronic energy + Delta-G solvation = -22494.316806 eV Core-core repulsion = 19409.405883 eV Total energy + Delta-G solvation = -3084.910922 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 286.174 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.46319 -38.04777 -36.41423 -34.05749 -33.11081 -31.72544 -29.89894 -29.59011 -29.04816 -26.53578 -23.89420 -23.06816 -22.31787 -22.06011 -21.17254 -19.82067 -19.23835 -17.23038 -16.67447 -16.39622 -15.61487 -15.03227 -14.43615 -14.27697 -14.05144 -13.86008 -13.79535 -13.36080 -13.28699 -13.03757 -12.67188 -12.45555 -12.27192 -12.13083 -11.70556 -11.62100 -11.14700 -11.06416 -10.91204 -10.77592 -10.69798 -10.44233 -10.20011 -10.11825 -9.80745 -9.62971 -9.41976 -9.15184 -9.07159 -8.57609 -8.33341 -7.24384 -6.48118 -4.07973 1.48593 1.67448 3.36676 3.38402 3.49484 3.58401 4.07262 4.43050 4.49120 4.65212 4.74733 4.88697 5.07445 5.08724 5.18875 5.35778 5.43755 5.44007 5.49504 5.55387 5.70107 5.72184 5.79286 5.82956 5.86377 5.89484 5.97880 6.07541 6.15419 6.33412 6.34681 6.46099 6.56772 6.59108 6.66032 6.71133 6.84116 6.91610 6.97034 7.20225 7.27271 7.46784 7.52959 7.94969 8.01746 8.25522 8.50337 8.81633 9.55120 10.89508 Molecular weight = 286.17amu Principal moments of inertia in cm(-1) A = 0.041345 B = 0.003301 C = 0.003204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 677.072650 B = 8480.022887 C = 8736.050296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.036 3.964 3 Si 1.062 2.938 4 H -0.287 1.287 5 H -0.285 1.285 6 H -0.285 1.285 7 C -0.571 4.571 8 C 0.004 3.996 9 C -0.118 4.118 10 C 0.165 3.835 11 H 0.070 0.930 12 N -0.717 5.717 13 C 0.417 3.583 14 C -0.237 4.237 15 C -0.037 4.037 16 C -0.205 4.205 17 C 0.181 3.819 18 N -0.561 5.561 19 C -0.067 4.067 20 C -0.117 4.117 21 C -0.120 4.120 22 C -0.062 4.062 23 C -0.113 4.113 24 C -0.002 4.002 25 H 0.272 0.728 26 H 0.038 0.962 27 H 0.007 0.993 28 H 0.032 0.968 29 H 0.052 0.948 30 H 0.398 0.602 31 H 0.134 0.866 32 H 0.127 0.873 33 H 0.080 0.920 34 H 0.079 0.921 35 H 0.066 0.934 36 H 0.069 0.931 37 H 0.065 0.935 38 H 0.064 0.936 39 H 0.067 0.933 40 H 0.067 0.933 41 H 0.039 0.961 42 H 0.057 0.943 43 H 0.014 0.986 44 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.642 -18.008 3.429 20.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.170 4.170 3 Si 0.891 3.109 4 H -0.213 1.213 5 H -0.211 1.211 6 H -0.212 1.212 7 C -0.590 4.590 8 C -0.034 4.034 9 C -0.157 4.157 10 C 0.062 3.938 11 H 0.088 0.912 12 N -0.347 5.347 13 C 0.178 3.822 14 C -0.262 4.262 15 C -0.063 4.063 16 C -0.210 4.210 17 C 0.044 3.956 18 N -0.279 5.279 19 C -0.105 4.105 20 C -0.155 4.155 21 C -0.157 4.157 22 C -0.100 4.100 23 C -0.151 4.151 24 C -0.041 4.041 25 H 0.085 0.915 26 H 0.057 0.943 27 H 0.025 0.975 28 H 0.051 0.949 29 H 0.071 0.929 30 H 0.233 0.767 31 H 0.152 0.848 32 H 0.145 0.855 33 H 0.099 0.901 34 H 0.098 0.902 35 H 0.084 0.916 36 H 0.087 0.913 37 H 0.084 0.916 38 H 0.083 0.917 39 H 0.085 0.915 40 H 0.085 0.915 41 H 0.057 0.943 42 H 0.076 0.924 43 H 0.032 0.968 44 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges 8.617 -15.889 4.122 18.539 hybrid contribution -0.052 -1.723 -0.559 1.813 sum 8.565 -17.612 3.563 19.906 Atomic orbital electron populations 1.70827 1.06876 1.31160 1.45282 1.25771 0.96229 1.01887 0.93094 0.83617 0.74850 0.75564 0.76910 1.21283 1.21097 1.21193 1.21012 0.90941 0.92584 1.54484 1.19492 0.97484 0.94101 0.92369 1.22107 0.93848 0.98161 1.01560 1.21009 0.95147 0.88065 0.89627 0.91225 1.45102 1.70343 1.01458 1.17777 1.18292 0.89177 0.85779 0.88960 1.21518 1.10047 0.96484 0.98141 1.21271 0.94258 0.92488 0.98239 1.19978 1.09400 0.96311 0.95332 1.20521 0.93114 0.88924 0.93022 1.66976 1.23349 1.03405 1.34203 1.20320 1.01154 0.92952 0.96032 1.21548 1.01596 0.95283 0.97104 1.21554 0.99901 0.99448 0.94825 1.20197 1.00011 0.90777 0.99042 1.21846 0.96996 0.94557 1.01716 1.19503 0.97219 0.94223 0.93106 0.91522 0.94337 0.97492 0.94919 0.92894 0.76737 0.84835 0.85542 0.90099 0.90242 0.91562 0.91268 0.91622 0.91705 0.91471 0.91480 0.94278 0.92421 0.96777 0.95158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.40 13.66 55.43 0.76 -25.64 16 2 C 0.04 0.97 5.46 -17.82 -0.10 0.87 16 3 Si 1.06 24.41 27.19 -169.99 -4.62 19.79 16 4 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 5 H -0.28 -6.23 7.11 56.52 0.40 -5.82 16 6 H -0.29 -6.23 7.11 56.52 0.40 -5.83 16 7 C -0.57 -14.66 5.50 -98.92 -0.54 -15.20 16 8 C 0.00 0.09 5.99 -27.26 -0.16 -0.07 16 9 C -0.12 -2.48 5.43 -26.42 -0.14 -2.62 16 10 C 0.17 3.13 2.04 -67.98 -0.14 2.99 16 11 H 0.07 1.33 6.46 -51.93 -0.34 1.00 16 12 N -0.72 -12.45 5.24 -54.06 -0.28 -12.74 16 13 C 0.42 7.22 7.63 -155.33 -1.19 6.03 16 14 C -0.24 -3.83 8.80 -39.30 -0.35 -4.18 16 15 C -0.04 -0.51 9.73 -39.20 -0.38 -0.89 16 16 C -0.21 -2.70 5.74 -104.55 -0.60 -3.30 16 17 C 0.18 2.59 6.62 -82.43 -0.55 2.04 16 18 N -0.56 -9.41 10.21 -8.69 -0.09 -9.50 16 19 C -0.07 -0.73 5.91 -28.01 -0.17 -0.89 16 20 C -0.12 -0.99 5.97 -26.71 -0.16 -1.15 16 21 C -0.12 -0.98 5.98 -26.69 -0.16 -1.14 16 22 C -0.06 -0.61 5.68 -28.10 -0.16 -0.77 16 23 C -0.11 -2.21 5.40 -26.63 -0.14 -2.35 16 24 C 0.00 -0.05 5.56 -27.48 -0.15 -0.20 16 25 H 0.27 7.87 6.36 -40.82 -0.26 7.61 16 26 H 0.04 0.99 5.80 -51.93 -0.30 0.69 16 27 H 0.01 0.16 8.14 -51.93 -0.42 -0.26 16 28 H 0.03 0.65 7.68 -51.93 -0.40 0.26 16 29 H 0.05 1.18 8.14 -51.93 -0.42 0.76 16 30 H 0.40 6.58 8.72 -40.82 -0.36 6.22 16 31 H 0.13 2.19 6.15 -52.49 -0.32 1.86 16 32 H 0.13 1.42 8.06 -52.48 -0.42 0.99 16 33 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.07 0.58 8.10 -51.93 -0.42 0.16 16 36 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.06 0.54 8.10 -51.93 -0.42 0.12 16 39 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.07 0.59 8.13 -51.93 -0.42 0.16 16 41 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 43 H 0.01 0.31 8.14 -51.93 -0.42 -0.12 16 44 H 0.03 0.66 5.24 -51.93 -0.27 0.39 16 LS Contribution 335.29 15.07 5.05 5.05 Total: -1.00 -28.68 335.29 -11.23 -39.91 By element: Atomic # 1 Polarization: 10.94 SS G_CDS: -6.96 Total: 3.98 kcal Atomic # 6 Polarization: -15.76 SS G_CDS: -5.09 Total: -20.85 kcal Atomic # 7 Polarization: -48.27 SS G_CDS: 0.38 Total: -47.88 kcal Atomic # 14 Polarization: 24.41 SS G_CDS: -4.62 Total: 19.79 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -28.68 -11.23 -39.91 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157049984.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.527 kcal (2) G-P(sol) polarization free energy of solvation -28.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.905 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds