Wall clock time and date at job start Tue Mar 31 2020 06:18:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86806 * 119.99793 * 2 1 4 4 H 1.48501 * 109.47006 * 0.02562 * 3 2 1 5 5 H 1.48497 * 109.46730 * 240.00119 * 3 2 1 6 6 H 1.48501 * 109.46733 * 120.00162 * 3 2 1 7 7 C 1.37874 * 120.00195 * 180.02562 * 2 1 3 8 8 C 1.51277 * 120.85039 * 5.23256 * 7 2 1 9 9 C 1.53654 * 108.31073 * 231.38468 * 8 7 2 10 10 C 1.52954 * 109.32943 * 305.13833 * 9 8 7 11 11 H 1.08998 * 109.35858 * 303.66402 * 10 9 8 12 12 N 1.46499 * 109.41887 * 183.83530 * 10 9 8 13 13 C 1.38997 * 120.00235 * 84.64553 * 12 10 9 14 14 C 1.39157 * 119.78824 * 0.02562 * 13 12 10 15 15 C 1.38063 * 118.76969 * 180.10287 * 14 13 12 16 16 C 1.39427 * 118.99779 * 359.89318 * 15 14 13 17 17 C 1.37465 * 119.30069 * 359.94529 * 16 15 14 18 18 N 1.32035 * 119.79605 * 179.73085 * 13 12 10 19 19 C 1.50741 * 122.35421 * 180.40956 * 17 16 15 20 20 C 1.52720 * 110.58520 * 342.10950 * 19 17 16 21 21 C 1.53326 * 108.41739 * 51.28260 * 20 19 17 22 22 C 1.50518 * 117.86181 * 179.71962 * 16 15 14 23 23 C 1.52958 * 109.81523 * 63.72895 * 10 9 8 24 24 C 1.51269 * 120.84967 * 184.96085 * 7 2 1 25 25 H 0.96998 * 119.99593 * 174.58148 * 1 2 3 26 26 H 1.09003 * 109.62398 * 351.04691 * 8 7 2 27 27 H 1.09001 * 109.62127 * 111.61104 * 8 7 2 28 28 H 1.09004 * 109.41364 * 185.24708 * 9 8 7 29 29 H 1.09003 * 109.63270 * 65.16470 * 9 8 7 30 30 H 0.97006 * 119.99872 * 264.65345 * 12 10 9 31 31 H 1.08002 * 120.61190 * 0.06985 * 14 13 12 32 32 H 1.08003 * 120.49953 * 179.88164 * 15 14 13 33 33 H 1.08995 * 109.25273 * 221.82670 * 19 17 16 34 34 H 1.08997 * 109.25763 * 102.39205 * 19 17 16 35 35 H 1.08998 * 109.67517 * 291.54827 * 20 19 17 36 36 H 1.09003 * 109.70169 * 171.03366 * 20 19 17 37 37 H 1.09000 * 109.68909 * 170.45672 * 21 20 19 38 38 H 1.09005 * 109.68811 * 49.88134 * 21 20 19 39 39 H 1.09001 * 109.25810 * 282.97537 * 22 16 15 40 40 H 1.09005 * 109.25563 * 42.40678 * 22 16 15 41 41 H 1.09006 * 109.48477 * 176.42054 * 23 10 9 42 42 H 1.09004 * 109.49320 * 56.39179 * 23 10 9 43 43 H 1.09001 * 109.62180 * 248.38294 * 24 7 2 44 44 H 1.08997 * 109.62793 * 8.76113 * 24 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 1.2841 2.7465 0.0006 5 1 3.1028 1.6964 -1.2125 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 6 1.2724 -2.5124 -0.1196 9 6 1.7422 -3.4301 1.0198 10 6 3.2664 -3.5502 0.9774 11 1 3.5732 -3.9115 -0.0042 12 7 3.7092 -4.4962 2.0047 13 6 3.7198 -5.8598 1.7357 14 6 3.3094 -6.3217 0.4888 15 6 3.3263 -7.6805 0.2450 16 6 3.7552 -8.5428 1.2531 17 6 4.1509 -8.0208 2.4617 18 7 4.1247 -6.7083 2.6627 19 6 4.6352 -8.8882 3.5954 20 6 4.2095 -10.3392 3.3810 21 6 4.6312 -10.7642 1.9695 22 6 3.7572 -10.0196 0.9620 23 6 3.9018 -2.1833 1.2372 24 6 3.5129 -1.2189 0.1118 25 1 -0.4849 -0.8363 -0.0793 26 1 0.1988 -2.3438 -0.0365 27 1 1.5002 -2.9721 -1.0813 28 1 1.2962 -4.4171 0.8974 29 1 1.4372 -3.0095 1.9781 30 1 3.9950 -4.1708 2.8727 31 1 2.9831 -5.6300 -0.2738 32 1 3.0118 -8.0696 -0.7122 33 1 4.2129 -8.5244 4.5320 34 1 5.7227 -8.8369 3.6481 35 1 3.1274 -10.4228 3.4816 36 1 4.6969 -10.9778 4.1177 37 1 4.4920 -11.8390 1.8527 38 1 5.6783 -10.5091 1.8066 39 1 2.7372 -10.3991 1.0212 40 1 4.1446 -10.1873 -0.0430 41 1 4.9865 -2.2866 1.2689 42 1 3.5459 -1.7921 2.1904 43 1 3.9444 -1.5610 -0.8289 44 1 3.8796 -0.2182 0.3402 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001157049984.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:37 Heat of formation + Delta-G solvation = -12.829626 kcal Electronic energy + Delta-G solvation = -22494.943465 eV Core-core repulsion = 19409.405883 eV Total energy + Delta-G solvation = -3085.537581 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 286.174 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.58325 -39.49416 -37.59397 -35.58651 -34.17996 -33.40071 -31.58916 -30.62210 -30.28995 -28.15181 -24.91302 -24.42134 -23.62506 -23.38738 -22.74143 -21.34712 -20.33537 -18.77569 -18.10988 -17.76585 -16.73901 -16.38980 -15.69914 -15.58227 -15.55039 -15.07376 -14.75074 -14.65127 -14.54313 -14.25023 -14.20518 -13.83259 -13.55411 -13.42729 -13.07061 -12.98951 -12.78811 -12.44219 -12.25495 -11.95604 -11.95061 -11.75819 -11.63201 -11.44012 -11.40050 -11.31653 -10.78726 -10.56554 -10.42409 -10.29878 -10.25169 -8.60766 -8.48523 -6.18029 0.33796 0.53088 1.51942 1.57822 1.76811 2.17653 2.55355 2.90914 3.14855 3.50533 3.80373 3.88743 4.04214 4.06935 4.08595 4.11483 4.14182 4.29974 4.40564 4.51823 4.58394 4.65872 4.74339 4.81200 4.86473 4.88436 4.92621 4.93787 4.98304 5.03944 5.09180 5.12399 5.16186 5.19363 5.23330 5.26473 5.33969 5.45574 5.49849 5.54394 5.66705 5.76617 6.01732 6.14648 6.22301 6.68518 6.73457 7.28543 7.52697 8.77891 Molecular weight = 286.17amu Principal moments of inertia in cm(-1) A = 0.041345 B = 0.003301 C = 0.003204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 677.072650 B = 8480.022887 C = 8736.050296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C -0.019 4.019 3 Si 1.097 2.903 4 H -0.297 1.297 5 H -0.265 1.265 6 H -0.265 1.265 7 C -0.576 4.576 8 C 0.000 4.000 9 C -0.104 4.104 10 C 0.181 3.819 11 H 0.070 0.930 12 N -0.719 5.719 13 C 0.394 3.606 14 C -0.256 4.256 15 C -0.038 4.038 16 C -0.200 4.200 17 C 0.163 3.837 18 N -0.578 5.578 19 C -0.066 4.066 20 C -0.113 4.113 21 C -0.117 4.117 22 C -0.064 4.064 23 C -0.106 4.106 24 C -0.007 4.007 25 H 0.258 0.742 26 H 0.012 0.988 27 H 0.007 0.993 28 H 0.038 0.962 29 H 0.034 0.966 30 H 0.400 0.600 31 H 0.126 0.874 32 H 0.153 0.847 33 H 0.076 0.924 34 H 0.086 0.914 35 H 0.063 0.937 36 H 0.092 0.908 37 H 0.089 0.911 38 H 0.063 0.937 39 H 0.077 0.923 40 H 0.081 0.919 41 H 0.066 0.934 42 H 0.051 0.949 43 H 0.021 0.979 44 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.866 -20.350 3.627 23.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.217 4.217 3 Si 0.921 3.079 4 H -0.224 1.224 5 H -0.190 1.190 6 H -0.190 1.190 7 C -0.595 4.595 8 C -0.039 4.039 9 C -0.143 4.143 10 C 0.076 3.924 11 H 0.088 0.912 12 N -0.350 5.350 13 C 0.157 3.843 14 C -0.281 4.281 15 C -0.064 4.064 16 C -0.204 4.204 17 C 0.027 3.973 18 N -0.298 5.298 19 C -0.104 4.104 20 C -0.151 4.151 21 C -0.155 4.155 22 C -0.101 4.101 23 C -0.145 4.145 24 C -0.046 4.046 25 H 0.070 0.930 26 H 0.031 0.969 27 H 0.026 0.974 28 H 0.056 0.944 29 H 0.053 0.947 30 H 0.236 0.764 31 H 0.143 0.857 32 H 0.171 0.829 33 H 0.094 0.906 34 H 0.105 0.895 35 H 0.082 0.918 36 H 0.110 0.890 37 H 0.108 0.892 38 H 0.082 0.918 39 H 0.095 0.905 40 H 0.100 0.900 41 H 0.084 0.916 42 H 0.070 0.930 43 H 0.040 0.960 44 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 10.872 -18.283 4.327 21.707 hybrid contribution -0.749 -1.187 -0.639 1.542 sum 10.124 -19.470 3.688 22.253 Atomic orbital electron populations 1.70935 1.08176 1.30406 1.48888 1.27036 0.96229 1.05416 0.92992 0.83175 0.74247 0.71985 0.78541 1.22425 1.18964 1.18984 1.21596 0.93100 0.92696 1.52127 1.19495 0.96033 0.94761 0.93585 1.21908 0.95978 0.97353 0.99084 1.20651 0.93083 0.88370 0.90256 0.91186 1.44807 1.71188 1.01531 1.17473 1.18449 0.90462 0.85692 0.89724 1.21584 1.11149 0.97617 0.97745 1.21654 0.93407 0.91699 0.99631 1.20455 1.07170 0.98369 0.94453 1.21213 0.92956 0.88499 0.94646 1.66992 1.23731 1.04585 1.34454 1.20429 1.01457 0.94009 0.94511 1.21559 1.01642 0.93712 0.98155 1.21573 0.99394 1.00634 0.93868 1.20316 1.01172 0.88266 1.00384 1.21720 0.98690 0.93946 1.00127 1.19552 0.94841 0.95622 0.94551 0.92992 0.96936 0.97423 0.94377 0.94695 0.76437 0.85651 0.82898 0.90587 0.89527 0.91833 0.88990 0.89236 0.91802 0.90458 0.90046 0.91554 0.93017 0.96030 0.94378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.19 13.66 21.45 0.29 -56.90 16 2 C -0.02 -1.03 5.46 84.65 0.46 -0.57 16 3 Si 1.10 48.92 27.19 68.60 1.87 50.78 16 4 H -0.30 -13.70 7.11 99.48 0.71 -12.99 16 5 H -0.26 -10.84 7.11 99.48 0.71 -10.14 16 6 H -0.26 -10.82 7.11 99.48 0.71 -10.11 16 7 C -0.58 -29.81 5.50 -16.17 -0.09 -29.90 16 8 C 0.00 -0.02 5.99 30.25 0.18 0.16 16 9 C -0.10 -4.46 5.43 30.80 0.17 -4.29 16 10 C 0.18 6.77 2.04 44.96 0.09 6.86 16 11 H 0.07 2.64 6.46 -2.39 -0.02 2.62 16 12 N -0.72 -24.68 5.24 -324.94 -1.70 -26.38 16 13 C 0.39 13.49 7.63 133.18 1.02 14.51 16 14 C -0.26 -8.13 8.80 22.45 0.20 -7.94 16 15 C -0.04 -1.00 9.73 22.51 0.22 -0.78 16 16 C -0.20 -4.82 5.74 -19.82 -0.11 -4.94 16 17 C 0.16 4.42 6.62 42.24 0.28 4.70 16 18 N -0.58 -19.05 10.21 -181.42 -1.85 -20.91 16 19 C -0.07 -1.31 5.91 29.77 0.18 -1.14 16 20 C -0.11 -1.55 5.97 30.61 0.18 -1.36 16 21 C -0.12 -1.48 5.98 30.62 0.18 -1.29 16 22 C -0.06 -1.02 5.68 29.71 0.17 -0.85 16 23 C -0.11 -4.02 5.40 30.66 0.17 -3.86 16 24 C -0.01 -0.32 5.56 30.11 0.17 -0.16 16 25 H 0.26 15.79 6.36 -92.71 -0.59 15.20 16 26 H 0.01 0.66 5.80 -2.39 -0.01 0.65 16 27 H 0.01 0.36 8.14 -2.39 -0.02 0.34 16 28 H 0.04 1.56 7.68 -2.38 -0.02 1.54 16 29 H 0.03 1.59 8.14 -2.39 -0.02 1.57 16 30 H 0.40 13.08 8.72 -92.70 -0.81 12.27 16 31 H 0.13 4.10 6.15 -2.91 -0.02 4.08 16 32 H 0.15 3.04 8.06 -2.91 -0.02 3.01 16 33 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 34 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 35 H 0.06 0.92 8.10 -2.39 -0.02 0.90 16 36 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 37 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 38 H 0.06 0.84 8.10 -2.38 -0.02 0.82 16 39 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 40 H 0.08 1.10 8.13 -2.38 -0.02 1.08 16 41 H 0.07 2.17 8.14 -2.38 -0.02 2.15 16 42 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 43 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16 44 H 0.04 1.59 5.24 -2.39 -0.01 1.58 16 Total: -1.00 -63.39 335.29 2.43 -60.96 By element: Atomic # 1 Polarization: 22.92 SS G_CDS: 0.37 Total: 23.28 kcal Atomic # 6 Polarization: -34.30 SS G_CDS: 3.46 Total: -30.84 kcal Atomic # 7 Polarization: -100.93 SS G_CDS: -3.26 Total: -104.19 kcal Atomic # 14 Polarization: 48.92 SS G_CDS: 1.87 Total: 50.78 kcal Total: -63.39 2.43 -60.96 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157049984.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.132 kcal (2) G-P(sol) polarization free energy of solvation -63.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.962 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds