Wall clock time and date at job start Tue Mar 31 2020 05:31:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.39873 * 125.90012 * 2 1 4 4 C 1.35320 * 107.91959 * 179.86332 * 3 2 1 5 5 C 1.50701 * 126.12548 * 180.14597 * 4 3 2 6 6 N 1.46491 * 109.47045 * 334.07345 * 5 4 3 7 7 C 1.46501 * 120.00124 * 94.40959 * 6 5 4 8 8 C 1.39081 * 120.00102 * 274.40323 * 6 5 4 9 9 C 1.38748 * 119.65379 * 4.72432 * 8 6 5 10 10 C 1.40778 * 118.66602 * 179.75890 * 9 8 6 11 11 C 1.41560 * 120.99465 * 180.26730 * 10 9 8 12 12 H 1.07991 * 119.99833 * 205.78912 * 11 10 9 13 13 C 1.40028 * 119.99744 * 25.78686 * 11 10 9 14 14 N 1.30747 * 119.99976 * 11.98533 * 13 11 10 15 15 Si 1.86799 * 119.99733 * 191.98675 * 13 11 10 16 16 H 1.48502 * 109.46965 * 94.98558 * 15 13 11 17 17 H 1.48492 * 109.47090 * 214.98447 * 15 13 11 18 18 H 1.48499 * 109.47325 * 334.98967 * 15 13 11 19 19 C 1.41186 * 118.01490 * 0.50541 * 10 9 8 20 20 C 1.36553 * 119.14703 * 359.75675 * 19 10 9 21 21 N 1.32099 * 121.26735 * 359.97438 * 20 19 10 22 22 N 1.34952 * 107.74256 * 0.39515 * 4 3 2 23 23 C 1.46509 * 126.03134 * 179.74961 * 22 4 3 24 24 N 1.30840 * 125.89619 * 180.31065 * 2 1 3 25 25 H 1.09002 * 109.47362 * 269.71477 * 1 2 3 26 26 H 1.09003 * 109.46653 * 29.71254 * 1 2 3 27 27 H 1.08995 * 109.47233 * 149.71608 * 1 2 3 28 28 H 1.07998 * 126.03994 * 359.97438 * 3 2 1 29 29 H 1.09003 * 109.46714 * 94.07656 * 5 4 3 30 30 H 1.08997 * 109.47004 * 214.07044 * 5 4 3 31 31 H 1.08999 * 109.47454 * 85.98446 * 7 6 5 32 32 H 1.09005 * 109.47082 * 205.98468 * 7 6 5 33 33 H 1.09003 * 109.46687 * 325.97783 * 7 6 5 34 34 H 1.07999 * 120.66649 * 0.03068 * 9 8 6 35 35 H 0.96995 * 119.99550 * 179.97438 * 14 13 11 36 36 H 1.08001 * 120.42727 * 179.77864 * 19 10 9 37 37 H 1.08004 * 119.37086 * 179.97438 * 20 19 10 38 38 H 1.09000 * 109.46893 * 265.53633 * 23 22 4 39 39 H 1.08994 * 109.47221 * 25.54309 * 23 22 4 40 40 H 1.09003 * 109.46768 * 145.53989 * 23 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3272 1.1330 0.0000 4 6 3.6143 0.7153 0.0031 5 6 4.8351 1.5988 0.0073 6 7 4.5041 2.8920 -0.5961 7 6 4.1028 4.0157 0.2538 8 6 4.5708 3.0530 -1.9760 9 6 4.8557 1.9599 -2.7817 10 6 4.9131 2.1454 -4.1760 11 6 5.1942 1.0633 -5.0444 12 1 5.6388 1.2482 -6.0110 13 6 4.8959 -0.2467 -4.6498 14 7 4.1521 -0.4586 -3.5956 15 14 5.5606 -1.6914 -5.6297 16 1 6.8231 -2.1699 -5.0114 17 1 4.5621 -2.7905 -5.6302 18 1 5.8252 -1.2624 -7.0266 19 6 4.6871 3.4439 -4.6821 20 6 4.4189 4.4601 -3.8104 21 7 4.3671 4.2499 -2.5072 22 7 3.6087 -0.6342 -0.0039 23 6 4.7899 -1.5009 -0.0088 24 7 2.2741 -1.0599 -0.0057 25 1 -0.3634 -0.0051 1.0277 26 1 -0.3633 0.8926 -0.5094 27 1 -0.3633 -0.8874 -0.5182 28 1 1.9924 2.1598 -0.0004 29 1 5.1694 1.7516 1.0335 30 1 5.6301 1.1228 -0.5667 31 1 4.9909 4.5417 0.6040 32 1 3.4777 4.7001 -0.3198 33 1 3.5410 3.6414 1.1096 34 1 5.0256 0.9855 -2.3481 35 1 3.9452 -1.3660 -3.3226 36 1 4.7254 3.6309 -5.7451 37 1 4.2458 5.4550 -4.1936 38 1 5.0352 -1.7750 -1.0348 39 1 5.6315 -0.9706 0.4368 40 1 4.5817 -2.4020 0.5681 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166596858.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:46 Heat of formation + Delta-G solvation = 101.440408 kcal Electronic energy + Delta-G solvation = -23154.724715 eV Core-core repulsion = 19970.601911 eV Total energy + Delta-G solvation = -3184.122804 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 286.149 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.10197 -40.32115 -37.38441 -35.84032 -34.77834 -32.59075 -31.64124 -30.62931 -30.31432 -28.50877 -27.46778 -26.17159 -25.51558 -23.32838 -22.11483 -20.96562 -20.25804 -19.25225 -17.69558 -17.52432 -16.96125 -16.53051 -16.32167 -15.85346 -15.41587 -15.14818 -14.79595 -14.74605 -14.33108 -14.28201 -14.24401 -13.77212 -13.68259 -13.40806 -13.12092 -13.10433 -12.86052 -12.80341 -12.76379 -12.63790 -12.56068 -11.92601 -11.74490 -11.43643 -11.24803 -10.52506 -9.86128 -9.83416 -9.73204 -9.24230 -8.58240 -8.10179 -6.49397 1.00788 1.06574 1.16798 1.35476 1.47466 1.55884 1.72723 1.96008 2.17876 2.38965 2.85877 3.69746 3.73430 3.90456 4.06964 4.21036 4.33438 4.36523 4.42181 4.45981 4.52401 4.64935 4.78167 4.82544 4.86010 4.88448 5.00872 5.06347 5.06887 5.08847 5.13144 5.27959 5.38527 5.41640 5.67166 5.90766 5.97569 6.12846 6.22664 6.38414 6.50306 6.86185 6.91596 6.94370 7.04527 7.88299 8.31015 Molecular weight = 286.15amu Principal moments of inertia in cm(-1) A = 0.011408 B = 0.008467 C = 0.005831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2453.740733 B = 3306.151577 C = 4801.009097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C 0.054 3.946 3 C -0.274 4.274 4 C 0.084 3.916 5 C 0.203 3.797 6 N -0.614 5.614 7 C 0.112 3.888 8 C 0.382 3.618 9 C -0.286 4.286 10 C 0.118 3.882 11 C -0.488 4.488 12 H 0.074 0.926 13 C 0.041 3.959 14 N -0.794 5.794 15 Si 0.973 3.027 16 H -0.257 1.257 17 H -0.275 1.275 18 H -0.261 1.261 19 C -0.321 4.321 20 C 0.128 3.872 21 N -0.620 5.620 22 N -0.363 5.363 23 C 0.097 3.903 24 N -0.328 5.328 25 H 0.094 0.906 26 H 0.077 0.923 27 H 0.067 0.933 28 H 0.132 0.868 29 H 0.127 0.873 30 H 0.074 0.926 31 H 0.050 0.950 32 H 0.058 0.942 33 H 0.074 0.926 34 H 0.123 0.877 35 H 0.279 0.721 36 H 0.103 0.897 37 H 0.152 0.848 38 H 0.059 0.941 39 H 0.109 0.891 40 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.104 -1.358 9.889 9.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.112 4.112 3 C -0.304 4.304 4 C -0.046 4.046 5 C 0.076 3.924 6 N -0.330 5.330 7 C -0.030 4.030 8 C 0.154 3.846 9 C -0.312 4.312 10 C 0.110 3.890 11 C -0.519 4.519 12 H 0.092 0.908 13 C -0.176 4.176 14 N -0.419 5.419 15 Si 0.795 3.205 16 H -0.182 1.182 17 H -0.200 1.200 18 H -0.185 1.185 19 C -0.346 4.346 20 C -0.025 4.025 21 N -0.343 5.343 22 N -0.145 5.145 23 C -0.044 4.044 24 N -0.152 5.152 25 H 0.112 0.888 26 H 0.096 0.904 27 H 0.086 0.914 28 H 0.149 0.851 29 H 0.145 0.855 30 H 0.093 0.907 31 H 0.069 0.931 32 H 0.077 0.923 33 H 0.093 0.907 34 H 0.141 0.859 35 H 0.089 0.911 36 H 0.121 0.879 37 H 0.169 0.831 38 H 0.078 0.922 39 H 0.128 0.872 40 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -0.022 -2.188 10.734 10.955 hybrid contribution 0.262 -0.482 -1.560 1.653 sum 0.240 -2.669 9.174 9.558 Atomic orbital electron populations 1.20175 0.85208 1.03145 1.03686 1.22707 0.98148 0.90730 0.99570 1.20963 0.91712 0.99109 1.18596 1.21869 0.98281 0.84830 0.99641 1.19749 0.90886 0.81783 0.99948 1.45849 1.74894 1.10548 1.01687 1.21466 0.99530 0.88422 0.93606 1.18301 0.91869 0.89622 0.84827 1.21552 1.17951 0.98326 0.93367 1.18031 0.85787 0.92450 0.92718 1.19768 1.38030 0.91446 1.02699 0.90831 1.26638 0.92651 1.02333 0.95956 1.69921 1.25808 1.23375 1.22822 0.85313 0.78922 0.76757 0.79520 1.18153 1.20033 1.18463 1.21700 1.17974 0.95557 0.99373 1.21738 0.94510 0.98283 0.87938 1.66871 1.29875 1.22934 1.14637 1.48300 1.05364 1.04148 1.56663 1.22016 0.83777 0.95304 1.03274 1.77079 0.87276 1.23466 1.27396 0.88762 0.90377 0.91359 0.85051 0.85550 0.90739 0.93142 0.92324 0.90719 0.85899 0.91073 0.87881 0.83115 0.92192 0.87227 0.88161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.76 10.45 71.24 0.74 -1.01 16 2 C 0.05 1.96 7.22 43.10 0.31 2.27 16 3 C -0.27 -10.33 10.11 21.99 0.22 -10.11 16 4 C 0.08 3.01 6.38 41.41 0.26 3.27 16 5 C 0.20 6.53 5.04 85.64 0.43 6.97 16 6 N -0.61 -22.87 2.50 -733.42 -1.83 -24.70 16 7 C 0.11 3.38 10.10 127.77 1.29 4.67 16 8 C 0.38 17.95 7.35 132.90 0.98 18.93 16 9 C -0.29 -14.78 7.75 23.01 0.18 -14.60 16 10 C 0.12 6.45 5.60 -21.11 -0.12 6.33 16 11 C -0.49 -26.23 9.13 23.52 0.21 -26.02 16 12 H 0.07 3.85 7.87 -2.92 -0.02 3.83 16 13 C 0.04 2.06 5.28 85.29 0.45 2.51 16 14 N -0.79 -40.54 10.78 21.84 0.24 -40.31 16 15 Si 0.97 38.04 29.58 68.60 2.03 40.07 16 16 H -0.26 -9.48 7.11 99.48 0.71 -8.77 16 17 H -0.28 -10.56 7.11 99.48 0.71 -9.86 16 18 H -0.26 -10.07 7.11 99.48 0.71 -9.36 16 19 C -0.32 -16.13 9.85 22.60 0.22 -15.91 16 20 C 0.13 5.88 11.10 84.26 0.94 6.82 16 21 N -0.62 -29.21 9.07 -194.47 -1.76 -30.97 16 22 N -0.36 -12.76 4.01 -356.01 -1.43 -14.19 16 23 C 0.10 2.61 11.21 127.77 1.43 4.04 16 24 N -0.33 -12.63 12.58 -47.38 -0.60 -13.23 16 25 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 26 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 27 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 28 H 0.13 4.91 7.66 -2.91 -0.02 4.89 16 29 H 0.13 2.98 8.04 -2.39 -0.02 2.96 16 30 H 0.07 2.57 6.30 -2.39 -0.02 2.55 16 31 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 32 H 0.06 1.97 7.32 -2.38 -0.02 1.96 16 33 H 0.07 1.84 8.10 -2.39 -0.02 1.82 16 34 H 0.12 6.40 4.25 -2.91 -0.01 6.39 16 35 H 0.28 13.45 8.29 -92.71 -0.77 12.68 16 36 H 0.10 4.86 8.06 -2.91 -0.02 4.83 16 37 H 0.15 5.76 8.06 -2.91 -0.02 5.74 16 38 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 39 H 0.11 2.25 7.53 -2.39 -0.02 2.23 16 40 H 0.10 2.24 8.14 -2.39 -0.02 2.22 16 Total: -1.00 -67.24 336.74 5.24 -62.00 By element: Atomic # 1 Polarization: 32.14 SS G_CDS: 1.04 Total: 33.18 kcal Atomic # 6 Polarization: -19.40 SS G_CDS: 7.56 Total: -11.84 kcal Atomic # 7 Polarization: -118.02 SS G_CDS: -5.38 Total: -123.40 kcal Atomic # 14 Polarization: 38.04 SS G_CDS: 2.03 Total: 40.07 kcal Total: -67.24 5.24 -62.00 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166596858.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 163.436 kcal (2) G-P(sol) polarization free energy of solvation -67.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.996 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds