Wall clock time and date at job start Tue Mar 31 2020 05:58:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.36266 * 126.33981 * 2 1 4 4 N 1.30142 * 110.02316 * 179.97438 * 3 2 1 5 5 C 1.35560 * 109.57940 * 359.73867 * 4 3 2 6 6 C 1.37418 * 126.34562 * 179.97438 * 2 1 3 7 7 C 1.39308 * 135.20658 * 0.02647 * 6 2 1 8 8 C 1.36650 * 119.08199 * 179.97438 * 7 6 2 9 9 N 1.32370 * 121.50171 * 359.96993 * 8 7 6 10 10 C 1.32249 * 122.26068 * 0.02824 * 9 8 7 11 11 N 1.38855 * 120.01670 * 180.02562 * 10 9 8 12 12 C 1.46843 * 111.00333 * 124.20676 * 11 10 9 13 13 C 1.53038 * 109.52415 * 174.15986 * 12 11 10 14 14 C 1.53116 * 109.28034 * 59.17999 * 13 12 11 15 15 C 1.53121 * 109.16058 * 302.34574 * 14 13 12 16 16 H 1.08997 * 109.53434 * 297.69454 * 15 14 13 17 17 C 1.50701 * 109.50138 * 177.59200 * 15 14 13 18 18 H 1.08002 * 119.99761 * 240.19217 * 17 15 14 19 19 C 1.37871 * 119.99694 * 60.47780 * 17 15 14 20 20 N 1.31514 * 120.00482 * 359.71466 * 19 17 15 21 21 Si 1.86801 * 119.99746 * 179.72062 * 19 17 15 22 22 H 1.48504 * 109.47209 * 89.99886 * 21 19 17 23 23 H 1.48501 * 109.47358 * 209.99377 * 21 19 17 24 24 H 1.48496 * 109.47341 * 329.99989 * 21 19 17 25 25 C 1.46851 * 110.99985 * 359.97438 * 11 10 9 26 26 H 1.09000 * 109.47054 * 270.01953 * 1 2 3 27 27 H 1.08995 * 109.47259 * 30.02474 * 1 2 3 28 28 H 1.08998 * 109.47144 * 150.02344 * 1 2 3 29 29 H 1.08002 * 124.99498 * 0.02562 * 3 2 1 30 30 H 1.08003 * 120.45727 * 359.96795 * 7 6 2 31 31 H 1.07997 * 119.25274 * 179.97438 * 8 7 6 32 32 H 1.09000 * 109.46401 * 294.17875 * 12 11 10 33 33 H 1.09003 * 109.46079 * 54.14125 * 12 11 10 34 34 H 1.09007 * 109.50088 * 179.12496 * 13 12 11 35 35 H 1.09005 * 109.50208 * 299.23415 * 13 12 11 36 36 H 1.08998 * 109.52185 * 182.44141 * 14 13 12 37 37 H 1.08998 * 109.51986 * 62.24900 * 14 13 12 38 38 H 0.96995 * 120.00207 * 179.97438 * 20 19 17 39 39 H 1.09002 * 109.45689 * 65.82751 * 25 11 10 40 40 H 1.08994 * 109.46554 * 305.85832 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2724 1.0976 0.0000 4 7 3.5214 0.7320 0.0005 5 6 3.5986 -0.6214 0.0068 6 6 2.2794 -1.1068 0.0005 7 6 2.0747 -2.4848 0.0007 8 6 3.1584 -3.3172 0.0007 9 7 4.3944 -2.8436 -0.0001 10 6 4.6534 -1.5467 -0.0003 11 7 5.9685 -1.1009 -0.0016 12 6 6.2184 -0.2020 -1.1356 13 6 7.6285 0.3822 -1.0240 14 6 8.6495 -0.7589 -1.0185 15 6 8.3376 -1.7067 0.1430 16 1 8.4347 -1.1706 1.0870 17 6 9.3020 -2.8645 0.1202 18 1 8.9319 -3.8735 0.0129 19 6 10.6561 -2.6362 0.2423 20 7 11.1068 -1.4076 0.3730 21 14 11.8509 -4.0721 0.2220 22 1 12.2746 -4.3437 -1.1752 23 1 13.0415 -3.7371 1.0439 24 1 11.1866 -5.2768 0.7808 25 6 6.9070 -2.2304 -0.0020 26 1 -0.3633 0.0004 1.0277 27 1 -0.3633 0.8897 -0.5142 28 1 -0.3633 -0.8902 -0.5135 29 1 1.9268 2.1209 0.0004 30 1 1.0734 -2.8896 0.0009 31 1 3.0029 -4.3860 0.0012 32 1 6.1291 -0.7599 -2.0677 33 1 5.4881 0.6071 -1.1254 34 1 7.8192 1.0372 -1.8741 35 1 7.7142 0.9518 -0.0986 36 1 9.6523 -0.3497 -0.8956 37 1 8.5906 -1.3048 -1.9601 38 1 12.0595 -1.2471 0.4592 39 1 6.8145 -2.7790 -0.9393 40 1 6.6768 -2.8941 0.8314 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166740167.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:23 Heat of formation + Delta-G solvation = 98.210449 kcal Electronic energy + Delta-G solvation = -22625.671241 eV Core-core repulsion = 19441.408375 eV Total energy + Delta-G solvation = -3184.262866 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 286.149 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.29833 -39.24354 -37.35688 -34.49152 -33.54151 -31.93899 -30.66692 -29.83741 -28.63449 -27.33853 -24.92837 -24.19484 -22.95228 -22.29155 -21.18141 -20.27629 -18.65428 -17.52229 -17.41948 -16.42507 -16.00708 -15.75349 -15.11294 -14.76000 -14.34472 -14.18732 -13.77772 -13.60157 -13.32226 -13.14648 -12.81378 -12.63145 -12.33630 -12.19436 -12.05283 -11.67080 -10.87980 -10.69946 -10.61041 -10.54758 -10.17875 -9.94778 -9.77810 -9.48726 -9.30398 -9.04012 -8.91515 -8.84882 -8.55521 -8.21063 -7.33053 -5.89835 -3.95205 1.00441 1.60301 2.45146 2.80179 3.37448 3.43763 3.47914 3.90185 4.12768 4.30013 4.39177 4.50480 4.53898 4.78119 4.96256 5.00136 5.13171 5.24195 5.40357 5.44569 5.70728 5.80020 5.81310 6.13171 6.19437 6.23671 6.31169 6.54121 6.60368 6.66031 6.78278 6.86666 6.99812 7.07400 7.20601 7.38855 7.54038 7.70228 7.84203 7.95818 8.14591 8.21943 8.41109 8.56882 9.08530 9.68567 11.16581 Molecular weight = 286.15amu Principal moments of inertia in cm(-1) A = 0.031817 B = 0.004120 C = 0.003730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 879.825272 B = 6794.532766 C = 7505.793010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.494 5.494 3 C 0.232 3.768 4 N -0.456 5.456 5 C -0.026 4.026 6 C 0.099 3.901 7 C -0.219 4.219 8 C 0.139 3.861 9 N -0.533 5.533 10 C 0.404 3.596 11 N -0.464 5.464 12 C 0.069 3.931 13 C -0.117 4.117 14 C -0.113 4.113 15 C 0.050 3.950 16 H 0.034 0.966 17 C -0.510 4.510 18 H 0.056 0.944 19 C 0.062 3.938 20 N -0.890 5.890 21 Si 0.891 3.109 22 H -0.282 1.282 23 H -0.287 1.287 24 H -0.274 1.274 25 C 0.077 3.923 26 H 0.073 0.927 27 H 0.088 0.912 28 H 0.082 0.918 29 H 0.213 0.787 30 H 0.125 0.875 31 H 0.158 0.842 32 H 0.033 0.967 33 H 0.086 0.914 34 H 0.053 0.947 35 H 0.064 0.936 36 H 0.093 0.907 37 H 0.032 0.968 38 H 0.259 0.741 39 H 0.039 0.961 40 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.378 4.025 -2.592 22.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.186 5.186 3 C -0.054 4.054 4 N -0.174 5.174 5 C -0.149 4.149 6 C -0.018 4.018 7 C -0.244 4.244 8 C -0.012 4.012 9 N -0.251 5.251 10 C 0.161 3.839 11 N -0.177 5.177 12 C -0.057 4.057 13 C -0.155 4.155 14 C -0.151 4.151 15 C 0.031 3.969 16 H 0.052 0.948 17 C -0.549 4.549 18 H 0.074 0.926 19 C -0.139 4.139 20 N -0.529 5.529 21 Si 0.719 3.281 22 H -0.208 1.208 23 H -0.213 1.213 24 H -0.199 1.199 25 C -0.048 4.048 26 H 0.092 0.908 27 H 0.106 0.894 28 H 0.101 0.899 29 H 0.230 0.770 30 H 0.143 0.857 31 H 0.175 0.825 32 H 0.051 0.949 33 H 0.104 0.896 34 H 0.072 0.928 35 H 0.083 0.917 36 H 0.111 0.889 37 H 0.051 0.949 38 H 0.069 0.931 39 H 0.057 0.943 40 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -20.785 4.339 -2.157 21.342 hybrid contribution -1.078 -1.012 -0.458 1.548 sum -21.862 3.327 -2.615 22.268 Atomic orbital electron populations 1.21939 0.76191 1.04512 1.03376 1.45189 1.07186 1.05414 1.60762 1.25416 0.85097 0.93172 1.01686 1.70314 1.17880 1.10613 1.18609 1.19329 0.92049 0.90851 1.12700 1.18787 0.90892 0.89710 1.02450 1.20366 1.00771 0.89024 1.14278 1.21950 0.86374 0.99716 0.93149 1.67869 1.23447 1.13007 1.20784 1.19524 0.89499 0.86381 0.88483 1.58781 0.99356 1.19699 1.39908 1.22257 0.99807 0.95136 0.88465 1.21715 0.93441 0.99287 1.01058 1.21708 0.99760 0.95124 0.98530 1.18768 0.88043 0.94747 0.95323 0.94779 1.21116 0.91130 0.92903 1.49734 0.92579 1.24928 0.98261 0.95512 0.95177 1.69895 1.13789 1.18948 1.50221 0.86611 0.80682 0.82945 0.77846 1.20813 1.21340 1.19914 1.22344 0.92411 0.89197 1.00879 0.90810 0.89374 0.89900 0.77023 0.85728 0.82518 0.94879 0.89559 0.92820 0.91716 0.88873 0.94891 0.93117 0.94287 0.90888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.43 11.19 59.84 0.67 1.10 16 2 N -0.49 -5.23 3.20 -123.13 -0.39 -5.63 16 3 C 0.23 2.60 12.51 -89.54 -1.12 1.48 16 4 N -0.46 -7.37 9.73 -11.88 -0.12 -7.49 16 5 C -0.03 -0.46 6.53 -84.56 -0.55 -1.01 16 6 C 0.10 1.41 6.92 -84.08 -0.58 0.83 16 7 C -0.22 -2.78 10.08 -39.76 -0.40 -3.18 16 8 C 0.14 2.01 11.10 -17.89 -0.20 1.81 16 9 N -0.53 -9.99 8.69 -12.46 -0.11 -10.09 16 10 C 0.40 7.99 6.43 -154.84 -1.00 6.99 16 11 N -0.46 -9.97 4.68 -172.94 -0.81 -10.78 16 12 C 0.07 1.36 5.25 -3.84 -0.02 1.34 16 13 C -0.12 -2.42 6.09 -26.65 -0.16 -2.59 16 14 C -0.11 -2.77 5.03 -26.61 -0.13 -2.90 16 15 C 0.05 1.31 2.26 -91.69 -0.21 1.11 16 16 H 0.03 0.99 8.14 -51.93 -0.42 0.56 16 17 C -0.51 -14.43 8.56 -34.44 -0.29 -14.73 16 18 H 0.06 1.57 7.74 -52.49 -0.41 1.17 16 19 C 0.06 1.76 5.31 -17.82 -0.09 1.67 16 20 N -0.89 -25.87 11.37 55.43 0.63 -25.24 16 21 Si 0.89 21.76 29.54 -169.99 -5.02 16.74 16 22 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 23 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 24 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 25 C 0.08 1.81 3.88 -3.83 -0.01 1.79 16 26 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 27 H 0.09 0.24 8.14 -51.93 -0.42 -0.19 16 28 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.21 1.31 8.06 -52.49 -0.42 0.88 16 30 H 0.12 1.14 8.06 -52.48 -0.42 0.72 16 31 H 0.16 1.72 8.06 -52.49 -0.42 1.30 16 32 H 0.03 0.66 8.14 -51.93 -0.42 0.23 16 33 H 0.09 1.63 6.05 -51.93 -0.31 1.32 16 34 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 35 H 0.06 1.38 8.14 -51.93 -0.42 0.96 16 36 H 0.09 2.51 6.18 -51.93 -0.32 2.19 16 37 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.26 7.18 8.31 -40.82 -0.34 6.85 16 39 H 0.04 0.93 8.12 -51.93 -0.42 0.51 16 40 H 0.07 1.77 7.71 -51.93 -0.40 1.37 16 LS Contribution 323.09 15.07 4.87 4.87 Total: -1.00 -33.78 323.09 -10.70 -44.48 By element: Atomic # 1 Polarization: 5.09 SS G_CDS: -5.65 Total: -0.56 kcal Atomic # 6 Polarization: -2.19 SS G_CDS: -4.11 Total: -6.30 kcal Atomic # 7 Polarization: -58.43 SS G_CDS: -0.80 Total: -59.23 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -33.78 -10.70 -44.48 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166740167.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.691 kcal (2) G-P(sol) polarization free energy of solvation -33.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 108.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.480 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds