Wall clock time and date at job start Tue Mar 31 2020 05:58:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.36266 * 126.33981 * 2 1 4 4 N 1.30142 * 110.02316 * 179.97438 * 3 2 1 5 5 C 1.35560 * 109.57940 * 359.73867 * 4 3 2 6 6 C 1.37418 * 126.34562 * 179.97438 * 2 1 3 7 7 C 1.39308 * 135.20658 * 0.02647 * 6 2 1 8 8 C 1.36650 * 119.08199 * 179.97438 * 7 6 2 9 9 N 1.32370 * 121.50171 * 359.96993 * 8 7 6 10 10 C 1.32249 * 122.26068 * 0.02824 * 9 8 7 11 11 N 1.38855 * 120.01670 * 180.02562 * 10 9 8 12 12 C 1.46843 * 111.00333 * 124.20676 * 11 10 9 13 13 C 1.53038 * 109.52415 * 174.15986 * 12 11 10 14 14 C 1.53116 * 109.28034 * 59.17999 * 13 12 11 15 15 C 1.53121 * 109.16058 * 302.34574 * 14 13 12 16 16 H 1.08997 * 109.53434 * 297.69454 * 15 14 13 17 17 C 1.50701 * 109.50138 * 177.59200 * 15 14 13 18 18 H 1.08002 * 119.99761 * 240.19217 * 17 15 14 19 19 C 1.37871 * 119.99694 * 60.47780 * 17 15 14 20 20 N 1.31514 * 120.00482 * 359.71466 * 19 17 15 21 21 Si 1.86801 * 119.99746 * 179.72062 * 19 17 15 22 22 H 1.48504 * 109.47209 * 89.99886 * 21 19 17 23 23 H 1.48501 * 109.47358 * 209.99377 * 21 19 17 24 24 H 1.48496 * 109.47341 * 329.99989 * 21 19 17 25 25 C 1.46851 * 110.99985 * 359.97438 * 11 10 9 26 26 H 1.09000 * 109.47054 * 270.01953 * 1 2 3 27 27 H 1.08995 * 109.47259 * 30.02474 * 1 2 3 28 28 H 1.08998 * 109.47144 * 150.02344 * 1 2 3 29 29 H 1.08002 * 124.99498 * 0.02562 * 3 2 1 30 30 H 1.08003 * 120.45727 * 359.96795 * 7 6 2 31 31 H 1.07997 * 119.25274 * 179.97438 * 8 7 6 32 32 H 1.09000 * 109.46401 * 294.17875 * 12 11 10 33 33 H 1.09003 * 109.46079 * 54.14125 * 12 11 10 34 34 H 1.09007 * 109.50088 * 179.12496 * 13 12 11 35 35 H 1.09005 * 109.50208 * 299.23415 * 13 12 11 36 36 H 1.08998 * 109.52185 * 182.44141 * 14 13 12 37 37 H 1.08998 * 109.51986 * 62.24900 * 14 13 12 38 38 H 0.96995 * 120.00207 * 179.97438 * 20 19 17 39 39 H 1.09002 * 109.45689 * 65.82751 * 25 11 10 40 40 H 1.08994 * 109.46554 * 305.85832 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2724 1.0976 0.0000 4 7 3.5214 0.7320 0.0005 5 6 3.5986 -0.6214 0.0068 6 6 2.2794 -1.1068 0.0005 7 6 2.0747 -2.4848 0.0007 8 6 3.1584 -3.3172 0.0007 9 7 4.3944 -2.8436 -0.0001 10 6 4.6534 -1.5467 -0.0003 11 7 5.9685 -1.1009 -0.0016 12 6 6.2184 -0.2020 -1.1356 13 6 7.6285 0.3822 -1.0240 14 6 8.6495 -0.7589 -1.0185 15 6 8.3376 -1.7067 0.1430 16 1 8.4347 -1.1706 1.0870 17 6 9.3020 -2.8645 0.1202 18 1 8.9319 -3.8735 0.0129 19 6 10.6561 -2.6362 0.2423 20 7 11.1068 -1.4076 0.3730 21 14 11.8509 -4.0721 0.2220 22 1 12.2746 -4.3437 -1.1752 23 1 13.0415 -3.7371 1.0439 24 1 11.1866 -5.2768 0.7808 25 6 6.9070 -2.2304 -0.0020 26 1 -0.3633 0.0004 1.0277 27 1 -0.3633 0.8897 -0.5142 28 1 -0.3633 -0.8902 -0.5135 29 1 1.9268 2.1209 0.0004 30 1 1.0734 -2.8896 0.0009 31 1 3.0029 -4.3860 0.0012 32 1 6.1291 -0.7599 -2.0677 33 1 5.4881 0.6071 -1.1254 34 1 7.8192 1.0372 -1.8741 35 1 7.7142 0.9518 -0.0986 36 1 9.6523 -0.3497 -0.8956 37 1 8.5906 -1.3048 -1.9601 38 1 12.0595 -1.2471 0.4592 39 1 6.8145 -2.7790 -0.9393 40 1 6.6768 -2.8941 0.8314 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166740167.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:23 Heat of formation + Delta-G solvation = 77.476646 kcal Electronic energy + Delta-G solvation = -22626.570326 eV Core-core repulsion = 19441.408375 eV Total energy + Delta-G solvation = -3185.161951 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 286.149 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -43.32056 -40.65373 -38.78831 -35.87510 -34.93681 -33.64652 -32.05380 -31.57190 -29.92585 -28.02574 -26.93868 -25.62647 -24.22639 -23.64284 -22.83930 -21.41849 -20.47456 -18.85627 -18.45882 -18.11407 -17.27567 -16.89571 -16.62177 -16.13217 -15.80225 -15.50465 -15.29651 -14.84111 -14.60870 -14.46142 -14.19837 -14.05922 -13.68223 -13.45636 -13.29605 -13.14446 -12.83474 -12.68538 -12.52921 -11.89630 -11.80245 -11.67552 -11.39586 -11.23438 -10.88432 -10.78566 -10.51470 -10.36898 -10.18096 -9.89232 -8.63473 -8.07409 -6.21596 -0.11038 0.46917 1.42476 1.43215 1.54341 1.67959 1.84813 2.42449 2.60722 2.93878 3.19311 3.27366 3.62076 3.71093 3.94817 4.12707 4.14315 4.16187 4.24369 4.38834 4.47620 4.52466 4.57512 4.65425 4.76271 4.78514 4.82469 4.92965 5.01805 5.12298 5.18089 5.22217 5.32739 5.45131 5.63236 5.64066 5.81790 6.00458 6.12694 6.16577 6.29396 6.39744 6.86299 6.87835 7.20216 7.45722 8.98065 Molecular weight = 286.15amu Principal moments of inertia in cm(-1) A = 0.031817 B = 0.004120 C = 0.003730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 879.825272 B = 6794.532766 C = 7505.793010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.486 5.486 3 C 0.260 3.740 4 N -0.514 5.514 5 C -0.047 4.047 6 C 0.087 3.913 7 C -0.187 4.187 8 C 0.112 3.888 9 N -0.562 5.562 10 C 0.360 3.640 11 N -0.480 5.480 12 C 0.079 3.921 13 C -0.107 4.107 14 C -0.103 4.103 15 C 0.050 3.950 16 H -0.005 1.005 17 C -0.536 4.536 18 H 0.050 0.950 19 C 0.015 3.985 20 N -0.915 5.915 21 Si 0.959 3.041 22 H -0.273 1.273 23 H -0.281 1.281 24 H -0.270 1.270 25 C 0.103 3.897 26 H 0.088 0.912 27 H 0.120 0.880 28 H 0.093 0.907 29 H 0.264 0.736 30 H 0.170 0.830 31 H 0.187 0.813 32 H 0.027 0.973 33 H 0.100 0.900 34 H 0.082 0.918 35 H 0.053 0.947 36 H 0.066 0.934 37 H 0.027 0.973 38 H 0.262 0.738 39 H 0.026 0.974 40 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.859 4.379 -3.135 26.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.176 5.176 3 C -0.026 4.026 4 N -0.233 5.233 5 C -0.169 4.169 6 C -0.032 4.032 7 C -0.212 4.212 8 C -0.038 4.038 9 N -0.281 5.281 10 C 0.119 3.881 11 N -0.196 5.196 12 C -0.046 4.046 13 C -0.145 4.145 14 C -0.141 4.141 15 C 0.032 3.968 16 H 0.013 0.987 17 C -0.574 4.574 18 H 0.069 0.931 19 C -0.184 4.184 20 N -0.554 5.554 21 Si 0.784 3.216 22 H -0.199 1.199 23 H -0.206 1.206 24 H -0.195 1.195 25 C -0.023 4.023 26 H 0.106 0.894 27 H 0.138 0.862 28 H 0.112 0.888 29 H 0.279 0.721 30 H 0.187 0.813 31 H 0.204 0.796 32 H 0.046 0.954 33 H 0.118 0.882 34 H 0.100 0.900 35 H 0.072 0.928 36 H 0.085 0.915 37 H 0.045 0.955 38 H 0.071 0.929 39 H 0.044 0.956 40 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -24.347 4.682 -2.700 24.940 hybrid contribution -0.277 -1.053 -0.270 1.122 sum -24.624 3.629 -2.970 25.067 Atomic orbital electron populations 1.22396 0.72518 1.06762 1.05038 1.45544 1.09097 1.03842 1.59073 1.26431 0.83924 0.95084 0.97148 1.70258 1.20899 1.10120 1.22031 1.19400 0.92840 0.91699 1.13005 1.19037 0.90454 0.91169 1.02520 1.20789 1.02197 0.88248 1.09935 1.22499 0.85584 1.01519 0.94206 1.67730 1.26211 1.13165 1.20972 1.19515 0.88995 0.87560 0.92021 1.58823 1.00388 1.19025 1.41357 1.22150 0.99108 0.95241 0.88143 1.21606 0.93087 0.98080 1.01721 1.21490 0.99471 0.95890 0.97290 1.18669 0.89740 0.94368 0.94069 0.98657 1.21422 0.92247 0.93245 1.50514 0.93149 1.25729 0.99844 0.98249 0.94546 1.70032 1.14220 1.20779 1.50368 0.85554 0.78262 0.79604 0.78209 1.19877 1.20646 1.19460 1.21802 0.91571 0.89712 0.99241 0.89357 0.86181 0.88789 0.72057 0.81277 0.79602 0.95442 0.88229 0.89960 0.92794 0.91544 0.95466 0.92920 0.95604 0.92688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.35 11.19 127.77 1.43 1.78 16 2 N -0.49 -8.28 3.20 -543.48 -1.74 -10.02 16 3 C 0.26 4.90 12.51 179.97 2.25 7.15 16 4 N -0.51 -15.98 9.73 -191.49 -1.86 -17.84 16 5 C -0.05 -1.64 6.53 39.64 0.26 -1.38 16 6 C 0.09 2.27 6.92 39.09 0.27 2.54 16 7 C -0.19 -4.20 10.08 22.16 0.22 -3.97 16 8 C 0.11 3.12 11.10 84.24 0.93 4.05 16 9 N -0.56 -21.73 8.69 -193.33 -1.68 -23.41 16 10 C 0.36 14.75 6.43 133.45 0.86 15.61 16 11 N -0.48 -21.83 4.68 -701.05 -3.28 -25.11 16 12 C 0.08 3.26 5.25 86.33 0.45 3.71 16 13 C -0.11 -4.60 6.09 30.65 0.19 -4.41 16 14 C -0.10 -5.33 5.03 30.67 0.15 -5.18 16 15 C 0.05 2.83 2.26 -11.49 -0.03 2.80 16 16 H 0.00 -0.30 8.14 -2.39 -0.02 -0.32 16 17 C -0.54 -31.86 8.56 25.60 0.22 -31.64 16 18 H 0.05 2.97 7.74 -2.91 -0.02 2.94 16 19 C 0.02 0.88 5.31 84.65 0.45 1.33 16 20 N -0.91 -55.11 11.37 21.45 0.24 -54.87 16 21 Si 0.96 45.64 29.54 68.60 2.03 47.67 16 22 H -0.27 -12.58 7.11 99.48 0.71 -11.87 16 23 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 24 H -0.27 -12.57 7.11 99.48 0.71 -11.87 16 25 C 0.10 5.20 3.88 86.32 0.34 5.53 16 26 H 0.09 0.26 8.14 -2.39 -0.02 0.24 16 27 H 0.12 -0.11 8.14 -2.39 -0.02 -0.13 16 28 H 0.09 0.32 8.14 -2.39 -0.02 0.30 16 29 H 0.26 1.82 8.06 -2.91 -0.02 1.79 16 30 H 0.17 2.21 8.06 -2.91 -0.02 2.18 16 31 H 0.19 3.77 8.06 -2.91 -0.02 3.75 16 32 H 0.03 1.13 8.14 -2.39 -0.02 1.11 16 33 H 0.10 3.85 6.05 -2.39 -0.01 3.83 16 34 H 0.08 3.01 8.14 -2.38 -0.02 2.99 16 35 H 0.05 2.41 8.14 -2.38 -0.02 2.39 16 36 H 0.07 3.77 6.18 -2.39 -0.01 3.76 16 37 H 0.03 1.38 8.14 -2.39 -0.02 1.36 16 38 H 0.26 14.88 8.31 -92.71 -0.77 14.11 16 39 H 0.03 1.32 8.12 -2.39 -0.02 1.30 16 40 H 0.05 2.88 7.71 -2.39 -0.02 2.86 16 Total: -1.00 -79.93 323.09 2.74 -77.19 By element: Atomic # 1 Polarization: 7.42 SS G_CDS: 1.03 Total: 8.45 kcal Atomic # 6 Polarization: -10.06 SS G_CDS: 8.00 Total: -2.06 kcal Atomic # 7 Polarization: -122.93 SS G_CDS: -8.32 Total: -131.25 kcal Atomic # 14 Polarization: 45.64 SS G_CDS: 2.03 Total: 47.67 kcal Total: -79.93 2.74 -77.19 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166740167.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.666 kcal (2) G-P(sol) polarization free energy of solvation -79.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.189 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds