Wall clock time and date at job start Tue Mar 31 2020 05:57:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.37096 * 124.98785 * 2 1 4 4 C 1.34299 * 109.81061 * 180.02562 * 3 2 1 5 5 C 1.46169 * 106.80900 * 0.02562 * 4 3 2 6 6 C 1.36774 * 124.99021 * 180.02562 * 2 1 3 7 7 N 1.33202 * 134.29873 * 359.97438 * 6 2 1 8 8 C 1.31555 * 120.71413 * 180.02562 * 7 6 2 9 9 N 1.32084 * 122.71046 * 359.73535 * 8 7 6 10 10 C 1.32991 * 121.03492 * 0.54054 * 9 8 7 11 11 N 1.38318 * 120.83890 * 179.74197 * 10 9 8 12 12 C 1.46843 * 111.00195 * 123.93141 * 11 10 9 13 13 C 1.53038 * 109.52415 * 174.16033 * 12 11 10 14 14 C 1.53116 * 109.28034 * 59.17999 * 13 12 11 15 15 C 1.53121 * 109.16058 * 302.34574 * 14 13 12 16 16 H 1.08997 * 109.53434 * 297.69454 * 15 14 13 17 17 C 1.50701 * 109.50138 * 177.59200 * 15 14 13 18 18 H 1.08002 * 119.99761 * 240.19217 * 17 15 14 19 19 C 1.37871 * 119.99694 * 60.47780 * 17 15 14 20 20 N 1.31514 * 120.00482 * 359.71466 * 19 17 15 21 21 Si 1.86801 * 119.99746 * 179.72062 * 19 17 15 22 22 H 1.48504 * 109.47209 * 89.99886 * 21 19 17 23 23 H 1.48501 * 109.47358 * 209.99377 * 21 19 17 24 24 H 1.48496 * 109.47341 * 329.99989 * 21 19 17 25 25 C 1.46851 * 111.00027 * 359.71893 * 11 10 9 26 26 H 1.08997 * 109.47282 * 90.02483 * 1 2 3 27 27 H 1.08999 * 109.47020 * 210.02456 * 1 2 3 28 28 H 1.08995 * 109.47238 * 330.01838 * 1 2 3 29 29 H 1.08001 * 125.09321 * 0.02562 * 3 2 1 30 30 H 1.08005 * 126.59493 * 180.02562 * 4 3 2 31 31 H 1.07992 * 118.64167 * 179.97438 * 8 7 6 32 32 H 1.09000 * 109.46401 * 294.17921 * 12 11 10 33 33 H 1.09004 * 109.46167 * 54.15533 * 12 11 10 34 34 H 1.09007 * 109.50088 * 179.12496 * 13 12 11 35 35 H 1.09005 * 109.50208 * 299.23415 * 13 12 11 36 36 H 1.08998 * 109.52185 * 182.44141 * 14 13 12 37 37 H 1.08998 * 109.51986 * 62.24900 * 14 13 12 38 38 H 0.96995 * 120.00207 * 179.97438 * 20 19 17 39 39 H 1.09002 * 109.45689 * 65.82603 * 25 11 10 40 40 H 1.08996 * 109.45754 * 305.85239 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2511 1.1232 0.0000 4 6 3.5473 0.7716 -0.0006 5 6 3.5889 -0.6895 -0.0016 6 6 2.2493 -1.1205 -0.0005 7 7 2.0017 -2.4293 -0.0007 8 6 2.9882 -3.2998 -0.0007 9 7 4.2587 -2.9387 -0.0057 10 6 4.6068 -1.6552 -0.0003 11 7 5.9385 -1.2816 -0.0002 12 6 6.2373 -0.3976 -1.1340 13 6 7.6764 0.1106 -1.0210 14 6 8.6351 -1.0832 -1.0143 15 6 8.2719 -2.0129 0.1470 16 1 8.3964 -1.4826 1.0910 17 6 9.1731 -3.2205 0.1254 18 1 8.7498 -4.2083 0.0178 19 6 10.5374 -3.0647 0.2489 20 7 11.0528 -1.8619 0.3799 21 14 11.6539 -4.5622 0.2300 22 1 12.0640 -4.8564 -1.1667 23 1 12.8598 -4.2911 1.0532 24 1 10.9257 -5.7298 0.7883 25 6 6.8155 -2.4596 0.0001 26 1 -0.3634 -0.0004 -1.0276 27 1 -0.3633 -0.8898 0.5142 28 1 -0.3633 0.8901 0.5135 29 1 1.8832 2.1386 0.0004 30 1 4.3957 1.4399 -0.0003 31 1 2.7492 -4.3529 -0.0004 32 1 6.1193 -0.9500 -2.0662 33 1 5.5513 0.4495 -1.1245 34 1 7.9027 0.7544 -1.8710 35 1 7.7914 0.6750 -0.0956 36 1 9.6581 -0.7281 -0.8903 37 1 8.5482 -1.6254 -1.9558 38 1 12.0126 -1.7524 0.4672 39 1 6.6948 -3.0023 -0.9374 40 1 6.5494 -3.1101 0.8332 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166741256.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:41 Heat of formation + Delta-G solvation = 79.472361 kcal Electronic energy + Delta-G solvation = -22621.243273 eV Core-core repulsion = 19436.167863 eV Total energy + Delta-G solvation = -3185.075410 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 286.149 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.91462 -40.54516 -39.19943 -36.08771 -34.31879 -33.56651 -32.58578 -31.76643 -30.00289 -27.78923 -26.87980 -25.71822 -24.54944 -23.30116 -23.01642 -21.25809 -20.50560 -18.99631 -18.78354 -17.91120 -17.28740 -16.82685 -16.56425 -15.98646 -15.71540 -15.41419 -15.32534 -14.86857 -14.53172 -14.41658 -14.33914 -14.06085 -13.93272 -13.44798 -13.16730 -12.92167 -12.83893 -12.69561 -12.54408 -12.06438 -11.87372 -11.79742 -11.71059 -11.39448 -11.00756 -10.74248 -10.38848 -10.17295 -10.12426 -9.68770 -8.74061 -8.08394 -6.21678 -0.12275 0.37643 1.42393 1.43035 1.53688 1.56411 1.69603 2.40038 2.54595 2.93352 3.18972 3.28423 3.39779 3.81342 3.86594 4.08293 4.12959 4.14318 4.27707 4.39415 4.46940 4.50606 4.61821 4.73023 4.75997 4.79871 4.80769 4.90391 5.01656 5.09700 5.23542 5.26624 5.37180 5.47864 5.63685 5.67754 5.90420 5.98366 6.03926 6.14297 6.20065 6.37058 6.46680 6.87609 7.31341 7.45704 8.96738 Molecular weight = 286.15amu Principal moments of inertia in cm(-1) A = 0.031780 B = 0.004105 C = 0.003717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 880.852573 B = 6819.317438 C = 7531.964992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.466 5.466 3 C 0.069 3.931 4 C -0.188 4.188 5 C -0.242 4.242 6 C 0.302 3.698 7 N -0.564 5.564 8 C 0.327 3.673 9 N -0.606 5.606 10 C 0.393 3.607 11 N -0.474 5.474 12 C 0.071 3.929 13 C -0.109 4.109 14 C -0.106 4.106 15 C 0.051 3.949 16 H 0.000 1.000 17 C -0.537 4.537 18 H 0.048 0.952 19 C 0.018 3.982 20 N -0.912 5.912 21 Si 0.954 3.046 22 H -0.274 1.274 23 H -0.281 1.281 24 H -0.272 1.272 25 C 0.100 3.900 26 H 0.082 0.918 27 H 0.076 0.924 28 H 0.120 0.880 29 H 0.230 0.770 30 H 0.166 0.834 31 H 0.223 0.777 32 H 0.033 0.967 33 H 0.109 0.891 34 H 0.088 0.912 35 H 0.062 0.938 36 H 0.066 0.934 37 H 0.025 0.975 38 H 0.262 0.738 39 H 0.027 0.973 40 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.550 8.984 -3.035 22.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.152 5.152 3 C -0.055 4.055 4 C -0.213 4.213 5 C -0.255 4.255 6 C 0.062 3.938 7 N -0.287 5.287 8 C 0.036 3.964 9 N -0.330 5.330 10 C 0.148 3.852 11 N -0.190 5.190 12 C -0.053 4.053 13 C -0.146 4.146 14 C -0.145 4.145 15 C 0.032 3.968 16 H 0.018 0.982 17 C -0.575 4.575 18 H 0.066 0.934 19 C -0.181 4.181 20 N -0.551 5.551 21 Si 0.780 3.220 22 H -0.200 1.200 23 H -0.207 1.207 24 H -0.197 1.197 25 C -0.026 4.026 26 H 0.100 0.900 27 H 0.095 0.905 28 H 0.138 0.862 29 H 0.246 0.754 30 H 0.184 0.816 31 H 0.239 0.761 32 H 0.051 0.949 33 H 0.127 0.873 34 H 0.106 0.894 35 H 0.080 0.920 36 H 0.085 0.915 37 H 0.044 0.956 38 H 0.071 0.929 39 H 0.046 0.954 40 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -20.863 8.497 -2.604 22.677 hybrid contribution 1.119 -0.850 -0.291 1.435 sum -19.744 7.647 -2.895 21.371 Atomic orbital electron populations 1.22270 0.73985 1.05759 1.04425 1.43989 1.07907 1.02292 1.61058 1.22678 0.88998 0.91936 1.01872 1.21871 0.98009 0.90490 1.10954 1.20283 0.93127 0.97083 1.14989 1.18583 0.88401 0.88114 0.98679 1.67376 1.38280 0.99806 1.23224 1.24949 0.81557 1.00058 0.89810 1.68518 1.22694 1.17903 1.23905 1.19963 0.89964 0.87992 0.87301 1.58673 0.99915 1.19185 1.41218 1.22349 0.99043 0.95749 0.88186 1.21644 0.92549 0.98054 1.02399 1.21509 1.00216 0.95620 0.97127 1.18667 0.89179 0.94516 0.94395 0.98191 1.21423 0.92338 0.93272 1.50507 0.93375 1.25659 0.99333 0.98514 0.94596 1.70006 1.12250 1.22566 1.50327 0.85618 0.78293 0.79940 0.78174 1.19970 1.20657 1.19661 1.21851 0.92516 0.88792 0.99436 0.89960 0.90495 0.86207 0.75361 0.81616 0.76117 0.94858 0.87343 0.89392 0.91961 0.91518 0.95593 0.92906 0.95424 0.92738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.84 11.07 127.77 1.41 2.26 16 2 N -0.47 -9.41 3.16 -545.13 -1.72 -11.13 16 3 C 0.07 1.11 11.30 82.97 0.94 2.05 16 4 C -0.19 -4.39 9.70 23.43 0.23 -4.16 16 5 C -0.24 -7.82 5.88 -20.11 -0.12 -7.93 16 6 C 0.30 8.97 7.95 133.96 1.06 10.03 16 7 N -0.56 -17.56 10.47 -197.88 -2.07 -19.63 16 8 C 0.33 10.45 12.23 180.87 2.21 12.67 16 9 N -0.61 -23.35 8.87 -197.18 -1.75 -25.10 16 10 C 0.39 15.05 6.43 133.41 0.86 15.91 16 11 N -0.47 -19.23 4.68 -700.94 -3.28 -22.51 16 12 C 0.07 2.48 5.24 86.33 0.45 2.93 16 13 C -0.11 -4.00 6.09 30.65 0.19 -3.82 16 14 C -0.11 -5.09 5.03 30.67 0.15 -4.93 16 15 C 0.05 2.71 2.26 -11.49 -0.03 2.68 16 16 H 0.00 0.00 8.14 -2.39 -0.02 -0.02 16 17 C -0.54 -30.83 8.56 25.60 0.22 -30.61 16 18 H 0.05 2.76 7.74 -2.91 -0.02 2.74 16 19 C 0.02 1.02 5.31 84.65 0.45 1.47 16 20 N -0.91 -53.01 11.37 21.45 0.24 -52.76 16 21 Si 0.95 44.59 29.54 68.60 2.03 46.61 16 22 H -0.27 -12.42 7.11 99.48 0.71 -11.72 16 23 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 24 H -0.27 -12.52 7.11 99.48 0.71 -11.81 16 25 C 0.10 4.74 3.89 86.33 0.34 5.08 16 26 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 27 H 0.08 1.04 8.13 -2.39 -0.02 1.02 16 28 H 0.12 0.49 8.13 -2.39 -0.02 0.47 16 29 H 0.23 1.14 8.06 -2.91 -0.02 1.12 16 30 H 0.17 3.39 7.03 -2.91 -0.02 3.37 16 31 H 0.22 5.31 8.06 -2.91 -0.02 5.29 16 32 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 33 H 0.11 3.07 5.06 -2.38 -0.01 3.06 16 34 H 0.09 2.68 8.14 -2.38 -0.02 2.66 16 35 H 0.06 2.34 8.14 -2.38 -0.02 2.32 16 36 H 0.07 3.55 6.18 -2.39 -0.01 3.54 16 37 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 38 H 0.26 14.41 8.31 -92.71 -0.77 13.64 16 39 H 0.03 1.34 8.12 -2.39 -0.02 1.32 16 40 H 0.05 2.72 7.74 -2.39 -0.02 2.70 16 Total: -1.00 -73.03 321.77 2.85 -70.17 By element: Atomic # 1 Polarization: 9.69 SS G_CDS: 1.04 Total: 10.73 kcal Atomic # 6 Polarization: -4.75 SS G_CDS: 8.37 Total: 3.62 kcal Atomic # 7 Polarization: -122.55 SS G_CDS: -8.58 Total: -131.13 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 2.03 Total: 46.61 kcal Total: -73.03 2.85 -70.17 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166741256.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.647 kcal (2) G-P(sol) polarization free energy of solvation -73.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.175 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds