Wall clock time and date at job start Tue Mar 31 2020 05:28:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.34637 * 125.05991 * 2 1 4 4 C 1.45914 * 107.03607 * 180.02562 * 3 2 1 5 5 N 1.33583 * 134.88219 * 179.35299 * 4 3 2 6 6 C 1.31472 * 120.42881 * 180.02562 * 5 4 3 7 7 N 1.32134 * 122.36969 * 359.97438 * 6 5 4 8 8 C 1.32932 * 121.34622 * 0.02562 * 7 6 5 9 9 N 1.38553 * 120.70496 * 179.97438 * 8 7 6 10 10 C 1.46845 * 111.00309 * 236.04458 * 9 8 7 11 11 C 1.53034 * 109.52662 * 174.15894 * 10 9 8 12 12 C 1.53121 * 109.27653 * 59.18031 * 11 10 9 13 13 C 1.53124 * 109.16108 * 302.34293 * 12 11 10 14 14 H 1.08998 * 109.50166 * 297.67663 * 13 12 11 15 15 C 1.50701 * 109.50158 * 177.59378 * 13 12 11 16 16 H 1.08002 * 119.99761 * 240.07651 * 15 13 12 17 17 C 1.37871 * 119.99694 * 60.36214 * 15 13 12 18 18 N 1.31514 * 120.00482 * 359.71466 * 17 15 13 19 19 Si 1.86801 * 119.99746 * 179.72062 * 17 15 13 20 20 H 1.48504 * 109.47266 * 60.00049 * 19 17 15 21 21 H 1.48504 * 109.46970 * 179.97438 * 19 17 15 22 22 H 1.48499 * 109.47383 * 299.99456 * 19 17 15 23 23 C 1.46852 * 110.99697 * 111.78959 * 9 8 7 24 24 C 1.39931 * 118.58942 * 0.24542 * 8 7 6 25 25 N 1.36400 * 125.06429 * 179.39068 * 2 1 3 26 26 H 0.96997 * 125.09891 * 0.02562 * 25 2 1 27 27 H 1.08990 * 109.47727 * 270.60835 * 1 2 3 28 28 H 1.09003 * 109.47245 * 30.61044 * 1 2 3 29 29 H 1.09000 * 109.47262 * 150.60354 * 1 2 3 30 30 H 1.07994 * 126.47856 * 359.40843 * 3 2 1 31 31 H 1.08008 * 118.81455 * 180.02562 * 6 5 4 32 32 H 1.09003 * 109.46148 * 54.14101 * 10 9 8 33 33 H 1.09004 * 109.46123 * 294.18054 * 10 9 8 34 34 H 1.09000 * 109.50557 * 299.24044 * 11 10 9 35 35 H 1.09001 * 109.50809 * 179.12036 * 11 10 9 36 36 H 1.09007 * 109.52292 * 182.44492 * 12 11 10 37 37 H 1.08997 * 109.57534 * 62.28174 * 12 11 10 38 38 H 0.96995 * 120.00207 * 179.97438 * 18 17 15 39 39 H 1.09002 * 109.42321 * 65.80573 * 23 9 8 40 40 H 1.08995 * 109.49687 * 305.84288 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2803 1.1021 0.0000 4 6 3.6679 0.6506 -0.0006 5 7 4.8571 1.2589 -0.0116 6 6 5.9662 0.5530 -0.0090 7 7 5.9638 -0.7683 0.0049 8 6 4.8272 -1.4576 0.0164 9 7 4.8401 -2.8430 0.0304 10 6 4.0747 -3.3878 -1.0982 11 6 4.2310 -4.9097 -1.1350 12 6 3.7242 -5.5020 0.1829 13 6 4.5047 -4.8823 1.3455 14 1 5.5603 -5.1372 1.2519 15 6 3.9718 -5.4158 2.6503 16 1 3.5592 -4.7378 3.3827 17 6 4.0166 -6.7689 2.9114 18 7 4.5191 -7.5945 2.0196 19 14 3.3632 -7.4294 4.5320 20 1 1.9243 -7.0862 4.6623 21 1 3.5247 -8.9052 4.5661 22 1 4.1208 -6.8220 5.6556 23 6 4.3414 -3.3610 1.3107 24 6 3.6174 -0.7544 0.0085 25 7 2.2906 -1.1164 0.0119 26 1 1.9614 -2.0287 0.0212 27 1 -0.3634 0.0109 1.0275 28 1 -0.3634 0.8845 -0.5233 29 1 -0.3634 -0.8953 -0.5044 30 1 1.9384 2.1264 -0.0090 31 1 6.9135 1.0718 -0.0176 32 1 4.4479 -2.9618 -2.0295 33 1 3.0215 -3.1336 -0.9791 34 1 5.2824 -5.1645 -1.2679 35 1 3.6502 -5.3154 -1.9634 36 1 3.8736 -6.5817 0.1785 37 1 2.6629 -5.2816 0.2981 38 1 4.5509 -8.5463 2.2034 39 1 3.2870 -3.1063 1.4188 40 1 4.9080 -2.9162 2.1287 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166743131.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:03 Heat of formation + Delta-G solvation = 85.131809 kcal Electronic energy + Delta-G solvation = -22904.074521 eV Core-core repulsion = 19719.244523 eV Total energy + Delta-G solvation = -3184.829998 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 286.149 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.03443 -38.95243 -38.29588 -34.47991 -32.75928 -31.99877 -31.22481 -30.10832 -29.89454 -27.38528 -25.12314 -24.17530 -23.35353 -21.80620 -21.41620 -20.62072 -19.05576 -17.96974 -17.36724 -16.75350 -15.95452 -15.48713 -14.99005 -14.70280 -14.49985 -14.34156 -13.80384 -13.61649 -13.29360 -13.14781 -12.68813 -12.65606 -12.55109 -12.43159 -12.28663 -11.94314 -11.10016 -11.03200 -10.93857 -10.84515 -10.59332 -10.32413 -9.99831 -9.68535 -9.39143 -9.14219 -8.88445 -8.62761 -8.42137 -8.19618 -8.04430 -6.07663 -4.14913 0.85399 1.36947 2.46644 2.84583 3.25818 3.31404 3.33314 3.64250 4.02516 4.04028 4.36941 4.55005 4.67649 4.80566 4.93284 5.10266 5.21902 5.22621 5.33143 5.42593 5.51461 5.57326 5.70221 5.77606 5.92200 6.06351 6.23980 6.27155 6.41113 6.46441 6.51188 6.59459 6.76968 6.97612 7.15751 7.23552 7.26016 7.31280 7.63509 7.66497 7.92489 8.02220 8.32085 8.45161 8.87896 9.50138 10.98399 Molecular weight = 286.15amu Principal moments of inertia in cm(-1) A = 0.018540 B = 0.004936 C = 0.004577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1509.904080 B = 5671.788059 C = 6115.478184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C 0.111 3.889 3 C -0.203 4.203 4 C 0.130 3.870 5 N -0.500 5.500 6 C 0.279 3.721 7 N -0.496 5.496 8 C 0.387 3.613 9 N -0.499 5.499 10 C 0.075 3.925 11 C -0.117 4.117 12 C -0.112 4.112 13 C 0.057 3.943 14 H 0.041 0.959 15 C -0.519 4.519 16 H 0.053 0.947 17 C 0.066 3.934 18 N -0.886 5.886 19 Si 0.892 3.108 20 H -0.278 1.278 21 H -0.286 1.286 22 H -0.277 1.277 23 C 0.081 3.919 24 C -0.037 4.037 25 N -0.568 5.568 26 H 0.420 0.580 27 H 0.084 0.916 28 H 0.089 0.911 29 H 0.073 0.927 30 H 0.156 0.844 31 H 0.197 0.803 32 H 0.064 0.936 33 H 0.021 0.979 34 H 0.069 0.931 35 H 0.054 0.946 36 H 0.096 0.904 37 H 0.030 0.970 38 H 0.262 0.738 39 H 0.021 0.979 40 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.012 12.643 -6.543 15.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.003 4.003 3 C -0.229 4.229 4 C -0.009 4.009 5 N -0.215 5.215 6 C -0.012 4.012 7 N -0.212 5.212 8 C 0.138 3.862 9 N -0.221 5.221 10 C -0.052 4.052 11 C -0.155 4.155 12 C -0.150 4.150 13 C 0.038 3.962 14 H 0.059 0.941 15 C -0.558 4.558 16 H 0.071 0.929 17 C -0.136 4.136 18 N -0.524 5.524 19 Si 0.720 3.280 20 H -0.204 1.204 21 H -0.212 1.212 22 H -0.202 1.202 23 C -0.044 4.044 24 C -0.153 4.153 25 N -0.174 5.174 26 H 0.261 0.739 27 H 0.103 0.897 28 H 0.108 0.892 29 H 0.092 0.908 30 H 0.173 0.827 31 H 0.214 0.786 32 H 0.082 0.918 33 H 0.039 0.961 34 H 0.088 0.912 35 H 0.073 0.927 36 H 0.115 0.885 37 H 0.049 0.951 38 H 0.072 0.928 39 H 0.039 0.961 40 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -5.670 12.724 -6.628 15.426 hybrid contribution -1.915 -0.923 0.992 2.346 sum -7.585 11.801 -5.636 15.118 Atomic orbital electron populations 1.20547 0.86817 1.04146 1.03829 1.20622 0.94005 0.85645 1.00051 1.21158 0.87984 0.98302 1.15487 1.20150 0.93061 0.88374 0.99274 1.67861 0.97272 1.41098 1.15229 1.24647 0.96273 0.85831 0.94488 1.68166 1.28064 1.09598 1.15333 1.19465 0.84682 0.90505 0.91523 1.58602 1.56987 1.00721 1.05782 1.22129 0.93449 0.97792 0.91868 1.21716 1.02230 0.91725 0.99837 1.21706 0.97376 1.03893 0.92029 1.18702 0.97613 0.85861 0.94045 0.94071 1.21015 1.41049 0.92325 1.01409 0.92882 1.24903 0.95038 0.96937 0.96676 1.69861 1.45034 1.03360 1.34149 0.86664 0.79342 0.77833 0.84190 1.20388 1.21181 1.20212 1.22443 0.95655 1.00157 0.86132 1.20806 0.86881 0.97861 1.09711 1.41895 1.03489 1.08796 1.63207 0.73901 0.89749 0.89228 0.90809 0.82684 0.78610 0.91751 0.96090 0.91245 0.92717 0.88530 0.95082 0.92806 0.96097 0.91600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.67 10.39 36.00 0.37 -0.29 16 2 C 0.11 1.26 7.08 -81.84 -0.58 0.68 16 3 C -0.20 -2.61 10.94 -37.79 -0.41 -3.03 16 4 C 0.13 2.12 7.57 -83.15 -0.63 1.49 16 5 N -0.50 -8.24 10.50 -11.48 -0.12 -8.36 16 6 C 0.28 4.38 12.26 -92.14 -1.13 3.25 16 7 N -0.50 -9.08 10.44 -13.73 -0.14 -9.22 16 8 C 0.39 7.15 5.73 -154.70 -0.89 6.26 16 9 N -0.50 -9.60 4.70 -172.97 -0.81 -10.41 16 10 C 0.07 1.27 5.06 -3.84 -0.02 1.25 16 11 C -0.12 -2.13 6.09 -26.65 -0.16 -2.29 16 12 C -0.11 -2.46 5.03 -26.60 -0.13 -2.59 16 13 C 0.06 1.36 2.26 -91.69 -0.21 1.15 16 14 H 0.04 1.12 8.14 -51.93 -0.42 0.69 16 15 C -0.52 -13.70 8.56 -34.44 -0.29 -13.99 16 16 H 0.05 1.39 7.74 -52.49 -0.41 0.98 16 17 C 0.07 1.77 5.31 -17.82 -0.09 1.68 16 18 N -0.89 -24.35 11.36 55.43 0.63 -23.72 16 19 Si 0.89 20.65 29.54 -169.99 -5.02 15.63 16 20 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 21 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 22 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 23 C 0.08 1.71 4.45 -3.83 -0.02 1.69 16 24 C -0.04 -0.61 6.19 -83.78 -0.52 -1.13 16 25 N -0.57 -7.75 5.34 -6.82 -0.04 -7.78 16 26 H 0.42 5.40 6.60 -40.82 -0.27 5.13 16 27 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 28 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.16 1.61 8.06 -52.49 -0.42 1.19 16 31 H 0.20 2.28 8.06 -52.48 -0.42 1.86 16 32 H 0.06 1.04 8.10 -51.93 -0.42 0.62 16 33 H 0.02 0.33 5.63 -51.93 -0.29 0.03 16 34 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 35 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.10 2.39 6.17 -51.93 -0.32 2.07 16 37 H 0.03 0.66 8.14 -51.93 -0.42 0.23 16 38 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 39 H 0.02 0.42 7.02 -51.93 -0.36 0.05 16 40 H 0.07 1.47 8.10 -51.93 -0.42 1.04 16 LS Contribution 320.90 15.07 4.84 4.84 Total: -1.00 -30.22 320.90 -10.81 -41.03 By element: Atomic # 1 Polarization: 9.30 SS G_CDS: -5.43 Total: 3.87 kcal Atomic # 6 Polarization: -1.15 SS G_CDS: -4.71 Total: -5.86 kcal Atomic # 7 Polarization: -59.02 SS G_CDS: -0.48 Total: -59.50 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.63 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -30.22 -10.81 -41.03 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166743131.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.164 kcal (2) G-P(sol) polarization free energy of solvation -30.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.032 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds