Wall clock time and date at job start Tue Mar 31 2020 05:28:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.34637 * 125.05991 * 2 1 4 4 C 1.45914 * 107.03607 * 180.02562 * 3 2 1 5 5 N 1.33583 * 134.88219 * 179.35299 * 4 3 2 6 6 C 1.31472 * 120.42881 * 180.02562 * 5 4 3 7 7 N 1.32134 * 122.36969 * 359.97438 * 6 5 4 8 8 C 1.32932 * 121.34622 * 0.02562 * 7 6 5 9 9 N 1.38553 * 120.70496 * 179.97438 * 8 7 6 10 10 C 1.46845 * 111.00309 * 236.04458 * 9 8 7 11 11 C 1.53034 * 109.52662 * 174.15894 * 10 9 8 12 12 C 1.53121 * 109.27653 * 59.18031 * 11 10 9 13 13 C 1.53124 * 109.16108 * 302.34293 * 12 11 10 14 14 H 1.08998 * 109.50166 * 297.67663 * 13 12 11 15 15 C 1.50701 * 109.50158 * 177.59378 * 13 12 11 16 16 H 1.08002 * 119.99761 * 240.07651 * 15 13 12 17 17 C 1.37871 * 119.99694 * 60.36214 * 15 13 12 18 18 N 1.31514 * 120.00482 * 359.71466 * 17 15 13 19 19 Si 1.86801 * 119.99746 * 179.72062 * 17 15 13 20 20 H 1.48504 * 109.47266 * 60.00049 * 19 17 15 21 21 H 1.48504 * 109.46970 * 179.97438 * 19 17 15 22 22 H 1.48499 * 109.47383 * 299.99456 * 19 17 15 23 23 C 1.46852 * 110.99697 * 111.78959 * 9 8 7 24 24 C 1.39931 * 118.58942 * 0.24542 * 8 7 6 25 25 N 1.36400 * 125.06429 * 179.39068 * 2 1 3 26 26 H 0.96997 * 125.09891 * 0.02562 * 25 2 1 27 27 H 1.08990 * 109.47727 * 270.60835 * 1 2 3 28 28 H 1.09003 * 109.47245 * 30.61044 * 1 2 3 29 29 H 1.09000 * 109.47262 * 150.60354 * 1 2 3 30 30 H 1.07994 * 126.47856 * 359.40843 * 3 2 1 31 31 H 1.08008 * 118.81455 * 180.02562 * 6 5 4 32 32 H 1.09003 * 109.46148 * 54.14101 * 10 9 8 33 33 H 1.09004 * 109.46123 * 294.18054 * 10 9 8 34 34 H 1.09000 * 109.50557 * 299.24044 * 11 10 9 35 35 H 1.09001 * 109.50809 * 179.12036 * 11 10 9 36 36 H 1.09007 * 109.52292 * 182.44492 * 12 11 10 37 37 H 1.08997 * 109.57534 * 62.28174 * 12 11 10 38 38 H 0.96995 * 120.00207 * 179.97438 * 18 17 15 39 39 H 1.09002 * 109.42321 * 65.80573 * 23 9 8 40 40 H 1.08995 * 109.49687 * 305.84288 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2803 1.1021 0.0000 4 6 3.6679 0.6506 -0.0006 5 7 4.8571 1.2589 -0.0116 6 6 5.9662 0.5530 -0.0090 7 7 5.9638 -0.7683 0.0049 8 6 4.8272 -1.4576 0.0164 9 7 4.8401 -2.8430 0.0304 10 6 4.0747 -3.3878 -1.0982 11 6 4.2310 -4.9097 -1.1350 12 6 3.7242 -5.5020 0.1829 13 6 4.5047 -4.8823 1.3455 14 1 5.5603 -5.1372 1.2519 15 6 3.9718 -5.4158 2.6503 16 1 3.5592 -4.7378 3.3827 17 6 4.0166 -6.7689 2.9114 18 7 4.5191 -7.5945 2.0196 19 14 3.3632 -7.4294 4.5320 20 1 1.9243 -7.0862 4.6623 21 1 3.5247 -8.9052 4.5661 22 1 4.1208 -6.8220 5.6556 23 6 4.3414 -3.3610 1.3107 24 6 3.6174 -0.7544 0.0085 25 7 2.2906 -1.1164 0.0119 26 1 1.9614 -2.0287 0.0212 27 1 -0.3634 0.0109 1.0275 28 1 -0.3634 0.8845 -0.5233 29 1 -0.3634 -0.8953 -0.5044 30 1 1.9384 2.1264 -0.0090 31 1 6.9135 1.0718 -0.0176 32 1 4.4479 -2.9618 -2.0295 33 1 3.0215 -3.1336 -0.9791 34 1 5.2824 -5.1645 -1.2679 35 1 3.6502 -5.3154 -1.9634 36 1 3.8736 -6.5817 0.1785 37 1 2.6629 -5.2816 0.2981 38 1 4.5509 -8.5463 2.2034 39 1 3.2870 -3.1063 1.4188 40 1 4.9080 -2.9162 2.1287 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166743131.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:03 Heat of formation + Delta-G solvation = 67.183078 kcal Electronic energy + Delta-G solvation = -22904.852837 eV Core-core repulsion = 19719.244523 eV Total energy + Delta-G solvation = -3185.608313 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 286.149 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -43.19695 -40.26167 -39.64512 -36.13709 -34.38576 -33.16268 -32.38814 -31.86456 -31.07458 -28.38742 -27.04012 -25.57639 -24.61153 -23.40578 -22.80583 -21.68003 -20.60215 -19.20634 -18.88271 -18.11125 -17.61664 -16.80478 -16.49290 -16.09405 -15.87200 -15.62102 -15.19540 -14.72084 -14.67971 -14.45104 -14.23668 -14.03768 -13.74575 -13.52676 -13.26174 -12.98540 -12.87883 -12.76373 -12.65938 -12.32800 -12.02013 -11.99592 -11.74397 -11.47713 -11.14283 -10.79763 -10.49025 -10.41080 -9.73473 -9.51639 -9.25426 -8.11376 -6.26179 -0.36544 0.16843 1.41091 1.42804 1.45923 1.50057 1.80070 2.24412 2.44862 2.79945 3.00673 3.16376 3.43291 3.45852 3.78353 3.89406 4.00884 4.02470 4.21876 4.32017 4.36331 4.44891 4.54943 4.67778 4.71253 4.76911 4.78534 4.92099 4.99601 5.08950 5.22043 5.27212 5.36144 5.42386 5.55226 5.59896 5.74233 5.92312 5.99707 6.11300 6.22444 6.31762 6.33350 6.83577 7.21249 7.42157 8.93264 Molecular weight = 286.15amu Principal moments of inertia in cm(-1) A = 0.018540 B = 0.004936 C = 0.004577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1509.904080 B = 5671.788059 C = 6115.478184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C 0.132 3.868 3 C -0.218 4.218 4 C 0.112 3.888 5 N -0.509 5.509 6 C 0.274 3.726 7 N -0.525 5.525 8 C 0.365 3.635 9 N -0.513 5.513 10 C 0.079 3.921 11 C -0.108 4.108 12 C -0.102 4.102 13 C 0.056 3.944 14 H -0.003 1.003 15 C -0.539 4.539 16 H 0.050 0.950 17 C 0.021 3.979 18 N -0.911 5.911 19 Si 0.953 3.047 20 H -0.268 1.268 21 H -0.283 1.283 22 H -0.277 1.277 23 C 0.101 3.899 24 C -0.050 4.050 25 N -0.569 5.569 26 H 0.424 0.576 27 H 0.097 0.903 28 H 0.114 0.886 29 H 0.086 0.914 30 H 0.180 0.820 31 H 0.229 0.771 32 H 0.077 0.923 33 H 0.041 0.959 34 H 0.052 0.948 35 H 0.086 0.914 36 H 0.065 0.935 37 H 0.037 0.963 38 H 0.262 0.738 39 H 0.032 0.968 40 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.552 13.992 -6.920 18.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.018 3.982 3 C -0.243 4.243 4 C -0.027 4.027 5 N -0.224 5.224 6 C -0.016 4.016 7 N -0.241 5.241 8 C 0.117 3.883 9 N -0.235 5.235 10 C -0.047 4.047 11 C -0.146 4.146 12 C -0.140 4.140 13 C 0.037 3.963 14 H 0.015 0.985 15 C -0.577 4.577 16 H 0.068 0.932 17 C -0.179 4.179 18 N -0.550 5.550 19 Si 0.778 3.222 20 H -0.193 1.193 21 H -0.208 1.208 22 H -0.202 1.202 23 C -0.025 4.025 24 C -0.166 4.166 25 N -0.175 5.175 26 H 0.265 0.735 27 H 0.116 0.884 28 H 0.132 0.868 29 H 0.105 0.895 30 H 0.197 0.803 31 H 0.245 0.755 32 H 0.095 0.905 33 H 0.059 0.941 34 H 0.071 0.929 35 H 0.104 0.896 36 H 0.084 0.916 37 H 0.056 0.944 38 H 0.071 0.929 39 H 0.050 0.950 40 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -8.218 14.083 -7.016 17.751 hybrid contribution -1.146 -1.282 1.102 2.042 sum -9.364 12.801 -5.914 16.927 Atomic orbital electron populations 1.20771 0.83173 1.06014 1.05194 1.21372 0.95870 0.84243 0.96726 1.21548 0.86363 1.00046 1.16350 1.20792 0.94329 0.88628 0.98992 1.67935 0.97679 1.41206 1.15541 1.25274 0.97471 0.85198 0.93687 1.68127 1.28725 1.10824 1.16444 1.19396 0.85729 0.89928 0.93229 1.58419 1.57803 1.01974 1.05319 1.22124 0.94490 0.96498 0.91628 1.21612 1.01518 0.92756 0.98714 1.21480 0.97425 1.01916 0.93220 1.18588 0.95097 0.88195 0.94375 0.98472 1.21347 1.41214 0.92730 1.02438 0.93167 1.25639 0.95267 0.97201 0.99756 1.70003 1.45787 1.03470 1.35711 0.85700 0.79119 0.77159 0.80190 1.19268 1.20828 1.20224 1.22009 0.95841 0.97791 0.86842 1.20671 0.87504 0.98005 1.10405 1.42005 1.02697 1.09703 1.63082 0.73521 0.88420 0.86777 0.89527 0.80262 0.75471 0.90481 0.94080 0.92910 0.89576 0.91607 0.94403 0.92852 0.95024 0.93888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.89 10.39 71.23 0.74 -0.15 16 2 C 0.13 2.57 7.08 41.02 0.29 2.86 16 3 C -0.22 -5.02 10.94 23.43 0.26 -4.76 16 4 C 0.11 3.51 7.57 41.44 0.31 3.82 16 5 N -0.51 -16.36 10.50 -190.22 -2.00 -18.36 16 6 C 0.27 8.53 12.26 180.88 2.22 10.75 16 7 N -0.53 -19.43 10.44 -197.35 -2.06 -21.49 16 8 C 0.36 13.50 5.73 133.25 0.76 14.26 16 9 N -0.51 -19.97 4.70 -701.14 -3.29 -23.26 16 10 C 0.08 2.62 5.06 86.33 0.44 3.05 16 11 C -0.11 -3.89 6.09 30.65 0.19 -3.70 16 12 C -0.10 -4.54 5.03 30.68 0.15 -4.39 16 13 C 0.06 2.81 2.26 -11.49 -0.03 2.78 16 14 H 0.00 -0.17 8.14 -2.39 -0.02 -0.19 16 15 C -0.54 -29.07 8.56 25.60 0.22 -28.85 16 16 H 0.05 2.67 7.74 -2.91 -0.02 2.64 16 17 C 0.02 1.14 5.31 84.65 0.45 1.59 16 18 N -0.91 -51.31 11.36 21.45 0.24 -51.06 16 19 Si 0.95 42.53 29.54 68.60 2.03 44.56 16 20 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 21 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 22 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 23 C 0.10 4.36 4.45 86.33 0.38 4.74 16 24 C -0.05 -1.61 6.19 39.23 0.24 -1.36 16 25 N -0.57 -14.27 5.34 -175.49 -0.94 -15.21 16 26 H 0.42 9.87 6.60 -92.71 -0.61 9.26 16 27 H 0.10 0.78 8.14 -2.39 -0.02 0.76 16 28 H 0.11 0.60 8.14 -2.39 -0.02 0.58 16 29 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 30 H 0.18 3.12 8.06 -2.91 -0.02 3.09 16 31 H 0.23 5.12 8.06 -2.91 -0.02 5.09 16 32 H 0.08 2.38 8.10 -2.39 -0.02 2.36 16 33 H 0.04 1.19 5.63 -2.39 -0.01 1.18 16 34 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 35 H 0.09 2.56 8.14 -2.39 -0.02 2.54 16 36 H 0.07 3.35 6.17 -2.38 -0.01 3.33 16 37 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 38 H 0.26 14.10 8.31 -92.71 -0.77 13.33 16 39 H 0.03 1.27 7.02 -2.39 -0.02 1.25 16 40 H 0.04 2.00 8.10 -2.39 -0.02 1.98 16 Total: -1.00 -67.77 320.90 1.06 -66.72 By element: Atomic # 1 Polarization: 17.02 SS G_CDS: 0.45 Total: 17.47 kcal Atomic # 6 Polarization: -5.99 SS G_CDS: 6.63 Total: 0.64 kcal Atomic # 7 Polarization: -121.34 SS G_CDS: -8.04 Total: -129.38 kcal Atomic # 14 Polarization: 42.53 SS G_CDS: 2.03 Total: 44.56 kcal Total: -67.77 1.06 -66.72 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166743131.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.898 kcal (2) G-P(sol) polarization free energy of solvation -67.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.715 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds