Wall clock time and date at job start Tue Mar 31 2020 05:57:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.35848 * 126.36091 * 2 1 4 4 N 1.30321 * 110.06777 * 180.02562 * 3 2 1 5 5 C 1.35247 * 109.62959 * 0.02562 * 4 3 2 6 6 C 1.40295 * 134.73692 * 179.97438 * 5 4 3 7 7 C 1.36381 * 118.99418 * 180.02562 * 6 5 4 8 8 N 1.32415 * 121.57395 * 359.72882 * 7 6 5 9 9 C 1.32355 * 122.19106 * 0.57272 * 8 7 6 10 10 N 1.39045 * 119.97764 * 179.71162 * 9 8 7 11 11 C 1.46505 * 119.99541 * 354.36516 * 10 9 8 12 12 H 1.09003 * 109.41356 * 35.14232 * 11 10 9 13 13 C 1.52955 * 109.41300 * 154.99951 * 11 10 9 14 14 C 1.53225 * 109.40718 * 183.63093 * 13 11 10 15 15 C 1.51272 * 108.53884 * 305.37897 * 14 13 11 16 16 C 1.37875 * 120.84852 * 231.36910 * 15 14 13 17 17 N 1.31513 * 119.99965 * 179.97438 * 16 15 14 18 18 Si 1.86803 * 120.00170 * 359.97160 * 16 15 14 19 19 H 1.48498 * 109.46914 * 90.00270 * 18 16 15 20 20 H 1.48494 * 109.47384 * 210.00505 * 18 16 15 21 21 H 1.48505 * 109.46919 * 330.00369 * 18 16 15 22 22 C 1.51270 * 118.29832 * 51.34327 * 15 14 13 23 23 C 1.52951 * 109.35616 * 275.32149 * 11 10 9 24 24 C 1.37978 * 126.35701 * 180.02562 * 2 1 3 25 25 H 1.08997 * 109.46572 * 264.08527 * 1 2 3 26 26 H 1.09001 * 109.46754 * 24.08393 * 1 2 3 27 27 H 1.09001 * 109.47169 * 144.08513 * 1 2 3 28 28 H 1.07999 * 124.96258 * 0.02562 * 3 2 1 29 29 H 1.08000 * 120.50235 * 0.04918 * 6 5 4 30 30 H 1.08004 * 119.21681 * 179.97438 * 7 6 5 31 31 H 0.96995 * 120.00648 * 174.36731 * 10 9 8 32 32 H 1.08997 * 109.48362 * 303.61530 * 13 11 10 33 33 H 1.09006 * 109.47986 * 63.65658 * 13 11 10 34 34 H 1.09001 * 109.62258 * 65.09161 * 14 13 11 35 35 H 1.08997 * 109.63091 * 185.65754 * 14 13 11 36 36 H 0.97002 * 119.99909 * 179.97438 * 17 16 15 37 37 H 1.09001 * 109.62304 * 188.94048 * 22 15 14 38 38 H 1.09000 * 109.78499 * 68.46560 * 22 15 14 39 39 H 1.09003 * 109.48725 * 296.31181 * 23 11 10 40 40 H 1.08998 * 109.48786 * 56.34905 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2704 1.0940 0.0000 4 7 3.5213 0.7284 -0.0005 5 6 3.6000 -0.6218 -0.0015 6 6 4.6523 -1.5496 -0.0028 7 6 4.3593 -2.8816 -0.0041 8 7 3.1086 -3.3163 0.0013 9 6 2.0748 -2.4899 -0.0030 10 7 0.7801 -2.9969 -0.0031 11 6 0.5586 -4.4401 -0.1230 12 1 1.3547 -4.9732 0.3969 13 6 -0.7889 -4.8015 0.5041 14 6 -0.9797 -6.3212 0.4601 15 6 -0.8130 -6.7856 -0.9699 16 6 -1.7652 -7.5817 -1.5703 17 7 -1.6035 -7.9755 -2.8146 18 14 -3.2850 -8.1010 -0.6163 19 1 -4.3601 -7.0957 -0.8126 20 1 -3.7488 -9.4239 -1.1060 21 1 -2.9540 -8.1962 0.8283 22 6 0.4250 -6.3538 -1.7244 23 6 0.5648 -4.8329 -1.6012 24 6 2.2830 -1.1112 -0.0005 25 1 -0.3632 -0.1059 1.0222 26 1 -0.3633 0.9382 -0.4194 27 1 -0.3633 -0.8323 -0.6028 28 1 1.9246 2.1171 0.0004 29 1 5.6789 -1.2141 -0.0025 30 1 5.1667 -3.5990 -0.0055 31 1 0.0235 -2.3951 0.0762 32 1 -0.8107 -4.4622 1.5397 33 1 -1.5908 -4.3181 -0.0540 34 1 -0.2323 -6.8024 1.0908 35 1 -1.9791 -6.5751 0.8133 36 1 -2.2733 -8.5359 -3.2368 37 1 0.3280 -6.6286 -2.7747 38 1 1.3040 -6.8380 -1.2990 39 1 -0.2691 -4.3488 -2.1095 40 1 1.5024 -4.5158 -2.0577 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167840694.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:29 Heat of formation + Delta-G solvation = 82.960694 kcal Electronic energy + Delta-G solvation = -22589.078733 eV Core-core repulsion = 19404.154589 eV Total energy + Delta-G solvation = -3184.924145 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 286.149 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.28497 -38.74237 -37.26349 -35.04139 -33.51537 -31.79783 -30.38136 -29.68663 -29.47717 -27.36455 -26.48067 -23.47619 -23.04306 -21.65174 -21.49141 -20.49092 -19.40978 -17.81086 -17.50958 -16.28973 -16.05121 -15.93282 -15.42806 -14.78791 -14.42857 -14.26432 -13.87739 -13.52932 -13.27081 -13.13225 -12.93369 -12.70273 -12.20410 -12.14071 -12.05229 -11.59664 -11.15747 -10.92052 -10.79675 -10.52214 -10.25205 -10.18806 -9.91336 -9.58589 -9.46844 -9.18736 -8.90498 -8.80272 -8.58706 -8.48293 -7.13999 -6.11024 -4.02114 1.14632 1.59724 2.44894 2.87082 3.22810 3.32829 3.33880 3.46797 4.17872 4.19862 4.35679 4.39833 4.42343 4.80541 4.85559 5.03210 5.15004 5.20892 5.29829 5.65726 5.70081 5.85749 5.89082 6.11101 6.21440 6.42069 6.47233 6.58068 6.69310 6.71545 6.80778 6.96660 6.99008 7.06398 7.12141 7.35888 7.50716 7.61365 7.64934 7.78529 7.82609 7.87261 8.38731 8.54738 8.96626 9.53004 10.98472 Molecular weight = 286.15amu Principal moments of inertia in cm(-1) A = 0.028023 B = 0.004203 C = 0.003896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 998.956573 B = 6660.817680 C = 7185.892725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.476 5.476 3 C 0.260 3.740 4 N -0.504 5.504 5 C 0.120 3.880 6 C -0.201 4.201 7 C 0.132 3.868 8 N -0.533 5.533 9 C 0.454 3.546 10 N -0.720 5.720 11 C 0.164 3.836 12 H 0.085 0.915 13 C -0.115 4.115 14 C -0.011 4.011 15 C -0.488 4.488 16 C 0.076 3.924 17 N -0.889 5.889 18 Si 0.887 3.113 19 H -0.279 1.279 20 H -0.290 1.290 21 H -0.267 1.267 22 C 0.013 3.987 23 C -0.111 4.111 24 C -0.073 4.073 25 H 0.079 0.921 26 H 0.095 0.905 27 H 0.085 0.915 28 H 0.213 0.787 29 H 0.131 0.869 30 H 0.157 0.843 31 H 0.393 0.607 32 H 0.035 0.965 33 H 0.052 0.948 34 H 0.021 0.979 35 H 0.032 0.968 36 H 0.264 0.736 37 H 0.056 0.944 38 H 0.007 0.993 39 H 0.043 0.957 40 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.623 16.159 5.967 17.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.166 5.166 3 C -0.026 4.026 4 N -0.224 5.224 5 C -0.007 4.007 6 C -0.227 4.227 7 C -0.018 4.018 8 N -0.254 5.254 9 C 0.207 3.793 10 N -0.352 5.352 11 C 0.061 3.939 12 H 0.103 0.897 13 C -0.154 4.154 14 C -0.049 4.049 15 C -0.507 4.507 16 C -0.127 4.127 17 N -0.526 5.526 18 Si 0.715 3.285 19 H -0.206 1.206 20 H -0.216 1.216 21 H -0.192 1.192 22 C -0.025 4.025 23 C -0.150 4.150 24 C -0.186 4.186 25 H 0.097 0.903 26 H 0.113 0.887 27 H 0.103 0.897 28 H 0.230 0.770 29 H 0.149 0.851 30 H 0.174 0.826 31 H 0.229 0.771 32 H 0.054 0.946 33 H 0.071 0.929 34 H 0.039 0.961 35 H 0.050 0.950 36 H 0.074 0.926 37 H 0.075 0.925 38 H 0.025 0.975 39 H 0.062 0.938 40 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 3.967 15.436 5.804 16.962 hybrid contribution -1.876 0.519 0.372 1.982 sum 2.091 15.955 6.176 17.236 Atomic orbital electron populations 1.22145 0.76244 1.05037 1.03795 1.45116 1.07100 1.05363 1.59056 1.25372 0.85339 0.93269 0.98641 1.70362 1.18027 1.10829 1.23214 1.18981 0.91380 0.90076 1.00279 1.20567 0.98082 0.91899 1.12133 1.21798 0.92464 0.93333 0.94165 1.67455 0.98504 1.35954 1.23487 1.17545 0.87682 0.83492 0.90543 1.45397 1.02282 1.09488 1.78048 1.21037 0.98039 0.77006 0.97832 0.89696 1.21888 0.95564 1.00718 0.97191 1.19688 0.97105 0.90516 0.97566 1.20050 1.05264 1.29913 0.95512 1.24849 0.97731 0.95438 0.94679 1.69842 1.35352 1.35489 1.11960 0.86683 0.83225 0.78009 0.80555 1.20553 1.21608 1.19200 1.19332 0.94791 0.89066 0.99305 1.21952 0.98483 1.00776 0.93799 1.19495 0.92712 0.88947 1.17472 0.90268 0.88663 0.89669 0.77014 0.85114 0.82560 0.77096 0.94608 0.92940 0.96097 0.94959 0.92609 0.92531 0.97457 0.93841 0.94743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.51 10.25 59.85 0.61 1.12 16 2 N -0.48 -5.39 3.20 -123.03 -0.39 -5.78 16 3 C 0.26 2.75 12.49 -89.78 -1.12 1.62 16 4 N -0.50 -7.22 11.26 -12.03 -0.14 -7.35 16 5 C 0.12 1.87 7.30 -84.74 -0.62 1.25 16 6 C -0.20 -2.91 10.12 -39.48 -0.40 -3.31 16 7 C 0.13 1.96 11.08 -17.97 -0.20 1.76 16 8 N -0.53 -9.38 9.17 -12.67 -0.12 -9.49 16 9 C 0.45 7.63 7.48 -154.90 -1.16 6.47 16 10 N -0.72 -11.66 5.22 -53.89 -0.28 -11.94 16 11 C 0.16 3.14 2.42 -67.98 -0.16 2.98 16 12 H 0.08 1.78 7.47 -51.93 -0.39 1.39 16 13 C -0.12 -2.20 5.40 -26.64 -0.14 -2.35 16 14 C -0.01 -0.24 5.59 -27.49 -0.15 -0.39 16 15 C -0.49 -12.63 5.51 -98.92 -0.55 -13.18 16 16 C 0.08 2.04 5.46 -17.82 -0.10 1.94 16 17 N -0.89 -25.40 12.73 55.43 0.71 -24.69 16 18 Si 0.89 20.65 27.27 -169.99 -4.64 16.02 16 19 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 20 H -0.29 -6.80 7.11 56.52 0.40 -6.39 16 21 H -0.27 -6.01 6.46 56.52 0.37 -5.65 16 22 C 0.01 0.33 5.97 -27.49 -0.16 0.16 16 23 C -0.11 -2.40 5.51 -26.64 -0.15 -2.55 16 24 C -0.07 -1.11 6.90 -83.80 -0.58 -1.69 16 25 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.09 0.38 8.13 -51.93 -0.42 -0.04 16 27 H 0.08 0.70 6.34 -51.93 -0.33 0.37 16 28 H 0.21 1.12 8.06 -52.49 -0.42 0.69 16 29 H 0.13 1.60 8.06 -52.49 -0.42 1.18 16 30 H 0.16 1.83 8.06 -52.48 -0.42 1.41 16 31 H 0.39 5.34 5.55 -40.82 -0.23 5.12 16 32 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 33 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 34 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 35 H 0.03 0.72 4.78 -51.93 -0.25 0.47 16 36 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 37 H 0.06 1.56 7.07 -51.93 -0.37 1.20 16 38 H 0.01 0.18 8.14 -51.93 -0.42 -0.24 16 39 H 0.04 0.96 8.14 -51.93 -0.42 0.54 16 40 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 LS Contribution 319.83 15.07 4.82 4.82 Total: -1.00 -32.28 319.83 -10.29 -42.57 By element: Atomic # 1 Polarization: 7.40 SS G_CDS: -5.38 Total: 2.02 kcal Atomic # 6 Polarization: -1.28 SS G_CDS: -4.88 Total: -6.16 kcal Atomic # 7 Polarization: -59.05 SS G_CDS: -0.22 Total: -59.27 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -4.64 Total: 16.02 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -32.28 -10.29 -42.57 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167840694.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.531 kcal (2) G-P(sol) polarization free energy of solvation -32.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.570 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds