Wall clock time and date at job start Tue Mar 31 2020 05:57:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.35848 * 126.36091 * 2 1 4 4 N 1.30321 * 110.06777 * 180.02562 * 3 2 1 5 5 C 1.35247 * 109.62959 * 0.02562 * 4 3 2 6 6 C 1.40295 * 134.73692 * 179.97438 * 5 4 3 7 7 C 1.36381 * 118.99418 * 180.02562 * 6 5 4 8 8 N 1.32415 * 121.57395 * 359.72882 * 7 6 5 9 9 C 1.32355 * 122.19106 * 0.57272 * 8 7 6 10 10 N 1.39045 * 119.97764 * 179.71162 * 9 8 7 11 11 C 1.46505 * 119.99541 * 354.36516 * 10 9 8 12 12 H 1.09003 * 109.41356 * 35.14232 * 11 10 9 13 13 C 1.52955 * 109.41300 * 154.99951 * 11 10 9 14 14 C 1.53225 * 109.40718 * 183.63093 * 13 11 10 15 15 C 1.51272 * 108.53884 * 305.37897 * 14 13 11 16 16 C 1.37875 * 120.84852 * 231.36910 * 15 14 13 17 17 N 1.31513 * 119.99965 * 179.97438 * 16 15 14 18 18 Si 1.86803 * 120.00170 * 359.97160 * 16 15 14 19 19 H 1.48498 * 109.46914 * 90.00270 * 18 16 15 20 20 H 1.48494 * 109.47384 * 210.00505 * 18 16 15 21 21 H 1.48505 * 109.46919 * 330.00369 * 18 16 15 22 22 C 1.51270 * 118.29832 * 51.34327 * 15 14 13 23 23 C 1.52951 * 109.35616 * 275.32149 * 11 10 9 24 24 C 1.37978 * 126.35701 * 180.02562 * 2 1 3 25 25 H 1.08997 * 109.46572 * 264.08527 * 1 2 3 26 26 H 1.09001 * 109.46754 * 24.08393 * 1 2 3 27 27 H 1.09001 * 109.47169 * 144.08513 * 1 2 3 28 28 H 1.07999 * 124.96258 * 0.02562 * 3 2 1 29 29 H 1.08000 * 120.50235 * 0.04918 * 6 5 4 30 30 H 1.08004 * 119.21681 * 179.97438 * 7 6 5 31 31 H 0.96995 * 120.00648 * 174.36731 * 10 9 8 32 32 H 1.08997 * 109.48362 * 303.61530 * 13 11 10 33 33 H 1.09006 * 109.47986 * 63.65658 * 13 11 10 34 34 H 1.09001 * 109.62258 * 65.09161 * 14 13 11 35 35 H 1.08997 * 109.63091 * 185.65754 * 14 13 11 36 36 H 0.97002 * 119.99909 * 179.97438 * 17 16 15 37 37 H 1.09001 * 109.62304 * 188.94048 * 22 15 14 38 38 H 1.09000 * 109.78499 * 68.46560 * 22 15 14 39 39 H 1.09003 * 109.48725 * 296.31181 * 23 11 10 40 40 H 1.08998 * 109.48786 * 56.34905 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2704 1.0940 0.0000 4 7 3.5213 0.7284 -0.0005 5 6 3.6000 -0.6218 -0.0015 6 6 4.6523 -1.5496 -0.0028 7 6 4.3593 -2.8816 -0.0041 8 7 3.1086 -3.3163 0.0013 9 6 2.0748 -2.4899 -0.0030 10 7 0.7801 -2.9969 -0.0031 11 6 0.5586 -4.4401 -0.1230 12 1 1.3547 -4.9732 0.3969 13 6 -0.7889 -4.8015 0.5041 14 6 -0.9797 -6.3212 0.4601 15 6 -0.8130 -6.7856 -0.9699 16 6 -1.7652 -7.5817 -1.5703 17 7 -1.6035 -7.9755 -2.8146 18 14 -3.2850 -8.1010 -0.6163 19 1 -4.3601 -7.0957 -0.8126 20 1 -3.7488 -9.4239 -1.1060 21 1 -2.9540 -8.1962 0.8283 22 6 0.4250 -6.3538 -1.7244 23 6 0.5648 -4.8329 -1.6012 24 6 2.2830 -1.1112 -0.0005 25 1 -0.3632 -0.1059 1.0222 26 1 -0.3633 0.9382 -0.4194 27 1 -0.3633 -0.8323 -0.6028 28 1 1.9246 2.1171 0.0004 29 1 5.6789 -1.2141 -0.0025 30 1 5.1667 -3.5990 -0.0055 31 1 0.0235 -2.3951 0.0762 32 1 -0.8107 -4.4622 1.5397 33 1 -1.5908 -4.3181 -0.0540 34 1 -0.2323 -6.8024 1.0908 35 1 -1.9791 -6.5751 0.8133 36 1 -2.2733 -8.5359 -3.2368 37 1 0.3280 -6.6286 -2.7747 38 1 1.3040 -6.8380 -1.2990 39 1 -0.2691 -4.3488 -2.1095 40 1 1.5024 -4.5158 -2.0577 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167840694.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:28 Heat of formation + Delta-G solvation = 63.930863 kcal Electronic energy + Delta-G solvation = -22589.903929 eV Core-core repulsion = 19404.154589 eV Total energy + Delta-G solvation = -3185.749340 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 286.149 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -43.26546 -39.98807 -38.72966 -36.34201 -34.78667 -33.47650 -31.54038 -31.38717 -30.81877 -28.66935 -27.56525 -24.63085 -24.34423 -23.37897 -23.02222 -21.60102 -21.07154 -18.89788 -18.54108 -17.99465 -17.12487 -16.95803 -16.74320 -16.33741 -15.84221 -15.38169 -15.13875 -14.90259 -14.53900 -14.47314 -14.08487 -14.05079 -13.71606 -13.57610 -13.29368 -13.12320 -12.75905 -12.73385 -12.58179 -11.93469 -11.84842 -11.60662 -11.38528 -11.18723 -10.94797 -10.67843 -10.54400 -10.42048 -10.21472 -9.87905 -8.33787 -8.14715 -6.10461 0.10666 0.48207 1.40070 1.43765 1.52827 1.64423 1.89600 2.21766 2.42398 3.03228 3.13269 3.29870 3.59198 3.71759 3.81222 4.04515 4.19186 4.27561 4.32614 4.34417 4.55113 4.63135 4.67220 4.71387 4.87044 4.93684 5.01823 5.04750 5.07166 5.22367 5.25737 5.31146 5.41384 5.57469 5.62504 5.69230 5.76575 5.82986 6.15485 6.22252 6.35008 6.46235 6.82984 6.95953 7.38195 7.47788 8.96401 Molecular weight = 286.15amu Principal moments of inertia in cm(-1) A = 0.028023 B = 0.004203 C = 0.003896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 998.956573 B = 6660.817680 C = 7185.892725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.061 3.939 2 N -0.474 5.474 3 C 0.281 3.719 4 N -0.540 5.540 5 C 0.096 3.904 6 C -0.200 4.200 7 C 0.119 3.881 8 N -0.567 5.567 9 C 0.437 3.563 10 N -0.714 5.714 11 C 0.181 3.819 12 H 0.066 0.934 13 C -0.106 4.106 14 C -0.014 4.014 15 C -0.498 4.498 16 C 0.019 3.981 17 N -0.935 5.935 18 Si 0.946 3.054 19 H -0.269 1.269 20 H -0.296 1.296 21 H -0.251 1.251 22 C 0.011 3.989 23 C -0.095 4.095 24 C -0.086 4.086 25 H 0.094 0.906 26 H 0.135 0.865 27 H 0.073 0.927 28 H 0.267 0.733 29 H 0.148 0.852 30 H 0.179 0.821 31 H 0.406 0.594 32 H 0.066 0.934 33 H 0.059 0.941 34 H 0.020 0.980 35 H 0.040 0.960 36 H 0.262 0.738 37 H 0.020 0.980 38 H -0.006 1.006 39 H 0.037 0.963 40 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.370 18.958 7.809 20.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 N -0.163 5.163 3 C -0.005 4.005 4 N -0.261 5.261 5 C -0.031 4.031 6 C -0.225 4.225 7 C -0.030 4.030 8 N -0.289 5.289 9 C 0.191 3.809 10 N -0.349 5.349 11 C 0.076 3.924 12 H 0.084 0.916 13 C -0.145 4.145 14 C -0.052 4.052 15 C -0.517 4.517 16 C -0.179 4.179 17 N -0.575 5.575 18 Si 0.772 3.228 19 H -0.195 1.195 20 H -0.223 1.223 21 H -0.175 1.175 22 C -0.027 4.027 23 C -0.135 4.135 24 C -0.200 4.200 25 H 0.113 0.887 26 H 0.153 0.847 27 H 0.092 0.908 28 H 0.283 0.717 29 H 0.166 0.834 30 H 0.196 0.804 31 H 0.245 0.755 32 H 0.085 0.915 33 H 0.078 0.922 34 H 0.038 0.962 35 H 0.058 0.942 36 H 0.071 0.929 37 H 0.039 0.961 38 H 0.013 0.987 39 H 0.056 0.944 40 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges 2.708 18.279 7.670 20.007 hybrid contribution -1.369 -0.234 -0.239 1.410 sum 1.339 18.045 7.431 19.561 Atomic orbital electron populations 1.22496 0.73692 1.06767 1.04966 1.45411 1.08580 1.04236 1.58107 1.26442 0.84221 0.94892 0.94913 1.70370 1.20365 1.09989 1.25367 1.19364 0.91961 0.91103 1.00649 1.20834 0.99007 0.91779 1.10925 1.22162 0.92239 0.94217 0.94419 1.67401 0.99683 1.37360 1.24413 1.17643 0.87466 0.84371 0.91407 1.45014 1.02878 1.08117 1.78934 1.20555 0.97684 0.78897 0.95220 0.91575 1.21744 0.95367 0.98177 0.99186 1.19707 0.97485 0.92939 0.95084 1.20620 1.04779 1.29089 0.97246 1.25690 1.00985 0.95753 0.95465 1.70004 1.36579 1.36997 1.13884 0.85727 0.79766 0.77378 0.79941 1.19475 1.22268 1.17473 1.19267 0.94637 0.91696 0.97079 1.21723 0.97719 0.97887 0.96147 1.19452 0.93584 0.89187 1.17753 0.88731 0.84708 0.90811 0.71719 0.83383 0.80415 0.75478 0.91510 0.92238 0.96190 0.94173 0.92872 0.96099 0.98731 0.94440 0.95470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.64 10.25 127.77 1.31 1.95 16 2 N -0.47 -9.26 3.20 -543.15 -1.74 -11.00 16 3 C 0.28 4.88 12.49 180.06 2.25 7.13 16 4 N -0.54 -14.30 11.26 -191.98 -2.16 -16.46 16 5 C 0.10 2.91 7.30 39.67 0.29 3.20 16 6 C -0.20 -5.70 10.12 22.34 0.23 -5.47 16 7 C 0.12 3.52 11.08 84.17 0.93 4.45 16 8 N -0.57 -20.11 9.17 -193.98 -1.78 -21.89 16 9 C 0.44 14.44 7.48 133.13 1.00 15.43 16 10 N -0.71 -22.29 5.22 -324.41 -1.69 -23.98 16 11 C 0.18 6.84 2.42 44.96 0.11 6.95 16 12 H 0.07 2.78 7.47 -2.39 -0.02 2.76 16 13 C -0.11 -3.84 5.40 30.65 0.17 -3.68 16 14 C -0.01 -0.61 5.59 30.10 0.17 -0.45 16 15 C -0.50 -26.04 5.51 -16.17 -0.09 -26.13 16 16 C 0.02 1.03 5.46 84.65 0.46 1.49 16 17 N -0.93 -55.26 12.73 21.45 0.27 -54.99 16 18 Si 0.95 42.14 27.27 68.60 1.87 44.01 16 19 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 20 H -0.30 -13.37 7.11 99.48 0.71 -12.67 16 21 H -0.25 -10.40 6.46 99.48 0.64 -9.76 16 22 C 0.01 0.59 5.97 30.11 0.18 0.77 16 23 C -0.10 -4.22 5.51 30.65 0.17 -4.05 16 24 C -0.09 -2.48 6.90 39.02 0.27 -2.21 16 25 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 26 H 0.13 0.36 8.13 -2.39 -0.02 0.34 16 27 H 0.07 0.99 6.34 -2.39 -0.02 0.97 16 28 H 0.27 1.27 8.06 -2.91 -0.02 1.24 16 29 H 0.15 3.51 8.06 -2.91 -0.02 3.49 16 30 H 0.18 4.17 8.06 -2.91 -0.02 4.14 16 31 H 0.41 10.19 5.55 -92.71 -0.51 9.67 16 32 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 33 H 0.06 2.08 8.14 -2.38 -0.02 2.06 16 34 H 0.02 0.87 8.14 -2.39 -0.02 0.85 16 35 H 0.04 1.67 4.78 -2.39 -0.01 1.66 16 36 H 0.26 14.72 8.31 -92.71 -0.77 13.95 16 37 H 0.02 1.20 7.07 -2.39 -0.02 1.19 16 38 H -0.01 -0.31 8.14 -2.39 -0.02 -0.33 16 39 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 40 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 Total: -1.00 -73.22 319.83 2.69 -70.53 By element: Atomic # 1 Polarization: 13.90 SS G_CDS: 0.48 Total: 14.39 kcal Atomic # 6 Polarization: -8.04 SS G_CDS: 7.44 Total: -0.60 kcal Atomic # 7 Polarization: -121.22 SS G_CDS: -7.10 Total: -128.32 kcal Atomic # 14 Polarization: 42.14 SS G_CDS: 1.87 Total: 44.01 kcal Total: -73.22 2.69 -70.53 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167840694.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.457 kcal (2) G-P(sol) polarization free energy of solvation -73.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.526 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds