Wall clock time and date at job start Tue Mar 31 2020 05:57:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36242 * 126.27936 * 2 1 4 4 N 1.30070 * 110.03105 * 179.97438 * 3 2 1 5 5 C 1.35752 * 109.49666 * 359.97438 * 4 3 2 6 6 C 1.40024 * 133.74513 * 179.97438 * 5 4 3 7 7 C 1.36885 * 118.38311 * 179.97438 * 6 5 4 8 8 C 1.39468 * 119.63736 * 0.28532 * 7 6 5 9 9 N 1.39038 * 119.41384 * 179.69757 * 8 7 6 10 10 C 1.46504 * 120.00073 * 359.97438 * 9 8 7 11 11 H 1.09002 * 109.41094 * 34.99758 * 10 9 8 12 12 C 1.52956 * 109.41428 * 154.85937 * 10 9 8 13 13 C 1.53231 * 109.40459 * 183.70455 * 12 10 9 14 14 C 1.51276 * 108.53376 * 305.37382 * 13 12 10 15 15 C 1.37880 * 120.84617 * 231.32288 * 14 13 12 16 16 N 1.31518 * 120.00260 * 0.02562 * 15 14 13 17 17 Si 1.86800 * 119.99808 * 179.97438 * 15 14 13 18 18 H 1.48507 * 109.46941 * 90.00499 * 17 15 14 19 19 H 1.48501 * 109.47070 * 209.99880 * 17 15 14 20 20 H 1.48495 * 109.47099 * 330.00260 * 17 15 14 21 21 C 1.51267 * 118.30074 * 51.34593 * 14 13 12 22 22 C 1.52965 * 109.41186 * 275.14291 * 10 9 8 23 23 N 1.32229 * 121.17319 * 359.43378 * 8 7 6 24 24 C 1.32540 * 121.34228 * 0.55142 * 23 8 7 25 25 H 1.09002 * 109.47206 * 270.03804 * 1 2 3 26 26 H 1.08996 * 109.47234 * 30.04458 * 1 2 3 27 27 H 1.09000 * 109.46823 * 150.03790 * 1 2 3 28 28 H 1.08001 * 124.98420 * 359.94851 * 3 2 1 29 29 H 1.08001 * 120.80487 * 359.97438 * 6 5 4 30 30 H 1.08002 * 120.17797 * 180.02562 * 7 6 5 31 31 H 0.97001 * 120.00313 * 179.97438 * 9 8 7 32 32 H 1.09002 * 109.48116 * 303.67906 * 12 10 9 33 33 H 1.08998 * 109.48204 * 63.71265 * 12 10 9 34 34 H 1.08999 * 109.62907 * 65.08107 * 13 12 10 35 35 H 1.08993 * 109.62983 * 185.65898 * 13 12 10 36 36 H 0.96995 * 120.00183 * 179.97438 * 16 15 14 37 37 H 1.09003 * 109.62596 * 68.36996 * 21 14 13 38 38 H 1.09001 * 109.62043 * 188.93754 * 21 14 13 39 39 H 1.09001 * 109.48233 * 296.27252 * 22 10 9 40 40 H 1.08993 * 109.48400 * 56.31156 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2712 1.0983 0.0000 4 7 3.5199 0.7344 0.0005 5 6 3.5968 -0.6210 0.0015 6 6 4.6616 -1.5303 0.0019 7 6 4.3744 -2.8687 0.0035 8 6 3.0444 -3.2886 -0.0014 9 7 2.7580 -4.6492 -0.0062 10 6 3.8486 -5.6274 -0.0066 11 1 4.6792 -5.2441 0.5861 12 6 3.3537 -6.9409 0.6011 13 6 4.5181 -7.9333 0.6857 14 6 5.1303 -8.0747 -0.6904 15 6 5.3296 -9.3185 -1.2510 16 7 4.9857 -10.4013 -0.5885 17 14 6.0868 -9.4656 -2.9523 18 1 7.5640 -9.5583 -2.8303 19 1 5.5679 -10.6857 -3.6213 20 1 5.7307 -8.2700 -3.7577 21 6 5.5186 -6.8168 -1.4353 22 6 4.3168 -5.8662 -1.4431 23 7 2.0511 -2.4159 0.0036 24 6 2.2803 -1.1104 0.0026 25 1 -0.3634 0.0007 1.0277 26 1 -0.3633 0.8895 -0.5145 27 1 -0.3633 -0.8903 -0.5133 28 1 1.9242 2.1211 -0.0008 29 1 5.6846 -1.1841 0.0011 30 1 5.1733 -3.5954 0.0043 31 1 1.8360 -4.9507 -0.0093 32 1 2.9620 -6.7539 1.6011 33 1 2.5656 -7.3574 -0.0261 34 1 5.2678 -7.5596 1.3832 35 1 4.1499 -8.9018 1.0239 36 1 5.1256 -11.2763 -0.9830 37 1 6.3609 -6.3398 -0.9341 38 1 5.7931 -7.0681 -2.4598 39 1 3.5055 -6.3089 -2.0210 40 1 4.6080 -4.9172 -1.8931 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167841055.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:32 Heat of formation + Delta-G solvation = 84.070563 kcal Electronic energy + Delta-G solvation = -22121.897737 eV Core-core repulsion = 18937.021720 eV Total energy + Delta-G solvation = -3184.876017 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 286.149 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.10191 -39.04507 -37.05106 -34.46070 -33.86152 -31.84026 -31.52426 -29.81992 -28.49976 -27.12926 -26.72378 -23.61060 -22.82801 -21.55679 -21.33583 -20.69239 -19.50965 -17.58812 -17.56470 -16.79811 -16.01871 -15.91315 -15.21586 -14.50788 -14.38794 -14.11225 -13.89953 -13.35840 -13.16254 -13.00499 -12.88128 -12.73649 -12.54886 -12.22687 -12.11715 -11.64162 -11.08543 -10.92039 -10.78954 -10.70493 -10.64967 -10.22636 -10.06231 -9.71603 -9.33719 -9.05323 -8.97321 -8.68532 -8.62194 -8.51830 -7.20344 -6.15652 -4.07362 1.14843 1.59599 2.35902 2.92461 3.24219 3.33067 3.33381 3.49569 4.10224 4.31144 4.33750 4.51421 4.56529 4.98974 5.08139 5.12366 5.17227 5.21906 5.33217 5.55132 5.62230 5.78211 6.00170 6.04530 6.23233 6.26551 6.40155 6.51572 6.62907 6.67771 6.79061 6.82497 6.93077 7.00472 7.06156 7.34003 7.39525 7.59823 7.64385 7.72960 7.82692 7.95181 8.31006 8.36999 8.90440 9.48718 10.93694 Molecular weight = 286.15amu Principal moments of inertia in cm(-1) A = 0.034059 B = 0.003531 C = 0.003403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 821.894893 B = 7928.428877 C = 8225.704967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.491 5.491 3 C 0.234 3.766 4 N -0.475 5.475 5 C -0.068 4.068 6 C 0.017 3.983 7 C -0.229 4.229 8 C 0.452 3.548 9 N -0.709 5.709 10 C 0.161 3.839 11 H 0.074 0.926 12 C -0.114 4.114 13 C 0.013 3.987 14 C -0.490 4.490 15 C 0.077 3.923 16 N -0.889 5.889 17 Si 0.886 3.114 18 H -0.278 1.278 19 H -0.290 1.290 20 H -0.264 1.264 21 C -0.020 4.020 22 C -0.119 4.119 23 N -0.567 5.567 24 C 0.293 3.707 25 H 0.070 0.930 26 H 0.084 0.916 27 H 0.086 0.914 28 H 0.213 0.787 29 H 0.138 0.862 30 H 0.146 0.854 31 H 0.400 0.600 32 H 0.037 0.963 33 H 0.056 0.944 34 H 0.007 0.993 35 H 0.061 0.939 36 H 0.265 0.735 37 H 0.019 0.981 38 H 0.037 0.963 39 H 0.055 0.945 40 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.106 17.953 1.019 19.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.187 5.187 3 C -0.052 4.052 4 N -0.194 5.194 5 C -0.189 4.189 6 C -0.010 4.010 7 C -0.254 4.254 8 C 0.206 3.794 9 N -0.339 5.339 10 C 0.058 3.942 11 H 0.092 0.908 12 C -0.152 4.152 13 C -0.025 4.025 14 C -0.509 4.509 15 C -0.126 4.126 16 N -0.527 5.527 17 Si 0.715 3.285 18 H -0.203 1.203 19 H -0.217 1.217 20 H -0.189 1.189 21 C -0.058 4.058 22 C -0.158 4.158 23 N -0.294 5.294 24 C 0.058 3.942 25 H 0.089 0.911 26 H 0.103 0.897 27 H 0.104 0.896 28 H 0.230 0.770 29 H 0.156 0.844 30 H 0.164 0.836 31 H 0.235 0.765 32 H 0.056 0.944 33 H 0.074 0.926 34 H 0.025 0.975 35 H 0.080 0.920 36 H 0.075 0.925 37 H 0.037 0.963 38 H 0.055 0.945 39 H 0.073 0.927 40 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -7.199 17.883 1.023 19.305 hybrid contribution -0.136 -0.456 -0.967 1.078 sum -7.335 17.427 0.056 18.908 Atomic orbital electron populations 1.21899 0.76106 1.04396 1.03215 1.44905 1.07204 1.04653 1.61943 1.25081 0.85042 0.92599 1.02470 1.70245 1.18348 1.11043 1.19733 1.19354 0.93297 0.91028 1.15244 1.20215 0.97859 0.90567 0.92336 1.21212 0.96486 0.96348 1.11394 1.18026 0.87866 0.85322 0.88185 1.45227 1.10315 1.00671 1.77643 1.21177 0.87756 0.87689 0.97618 0.90769 1.21926 1.01169 0.94492 0.97621 1.19347 0.91858 0.95501 0.95749 1.20035 1.40081 0.89546 1.01265 1.24850 0.94918 0.95348 0.97493 1.69828 1.46892 0.97912 1.38040 0.86685 0.79695 0.77248 0.84880 1.20346 1.21664 1.18929 1.19811 0.93288 0.95145 0.97516 1.22040 1.00478 0.98352 0.94975 1.65701 1.35841 0.99427 1.28428 1.18406 0.88792 0.86993 1.00048 0.91107 0.89742 0.89564 0.77041 0.84420 0.83610 0.76536 0.94410 0.92568 0.97490 0.92027 0.92527 0.96269 0.94497 0.92655 0.94493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.65 11.19 59.85 0.67 1.32 16 2 N -0.49 -5.87 3.20 -125.02 -0.40 -6.27 16 3 C 0.23 2.55 12.51 -89.63 -1.12 1.43 16 4 N -0.48 -6.94 11.28 -11.96 -0.13 -7.08 16 5 C -0.07 -1.09 7.24 -84.63 -0.61 -1.70 16 6 C 0.02 0.25 10.16 -39.40 -0.40 -0.15 16 7 C -0.23 -3.53 8.72 -39.61 -0.35 -3.87 16 8 C 0.45 7.48 7.62 -155.01 -1.18 6.30 16 9 N -0.71 -11.49 5.24 -53.91 -0.28 -11.77 16 10 C 0.16 2.86 2.04 -67.97 -0.14 2.72 16 11 H 0.07 1.31 6.42 -51.93 -0.33 0.98 16 12 C -0.11 -2.21 5.40 -26.63 -0.14 -2.36 16 13 C 0.01 0.31 5.97 -27.48 -0.16 0.15 16 14 C -0.49 -12.23 5.51 -98.92 -0.55 -12.78 16 15 C 0.08 2.02 5.46 -17.82 -0.10 1.93 16 16 N -0.89 -24.80 12.73 55.43 0.71 -24.10 16 17 Si 0.89 20.46 27.53 -169.99 -4.68 15.78 16 18 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 19 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 20 H -0.26 -5.90 6.11 56.52 0.35 -5.55 16 21 C -0.02 -0.43 5.60 -27.48 -0.15 -0.58 16 22 C -0.12 -2.30 5.40 -26.63 -0.14 -2.44 16 23 N -0.57 -9.48 10.42 -11.46 -0.12 -9.59 16 24 C 0.29 4.62 8.00 -155.60 -1.25 3.38 16 25 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 26 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 27 H 0.09 0.74 8.14 -51.93 -0.42 0.31 16 28 H 0.21 1.18 8.06 -52.49 -0.42 0.76 16 29 H 0.14 1.70 8.06 -52.49 -0.42 1.28 16 30 H 0.15 2.14 6.05 -52.49 -0.32 1.82 16 31 H 0.40 6.16 8.72 -40.82 -0.36 5.80 16 32 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 34 H 0.01 0.16 8.14 -51.93 -0.42 -0.27 16 35 H 0.06 1.59 7.07 -51.93 -0.37 1.23 16 36 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 37 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.04 0.82 4.59 -51.93 -0.24 0.58 16 39 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 40 H 0.04 0.66 7.67 -51.93 -0.40 0.26 16 LS Contribution 321.63 15.07 4.85 4.85 Total: -1.00 -30.52 321.63 -11.12 -41.64 By element: Atomic # 1 Polarization: 8.63 SS G_CDS: -5.43 Total: 3.20 kcal Atomic # 6 Polarization: -1.03 SS G_CDS: -5.62 Total: -6.65 kcal Atomic # 7 Polarization: -58.57 SS G_CDS: -0.23 Total: -58.81 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -4.68 Total: 15.78 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -30.52 -11.12 -41.64 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167841055.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.706 kcal (2) G-P(sol) polarization free energy of solvation -30.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.636 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds