Wall clock time and date at job start Tue Mar 31 2020 05:57:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36242 * 126.27936 * 2 1 4 4 N 1.30070 * 110.03105 * 179.97438 * 3 2 1 5 5 C 1.35752 * 109.49666 * 359.97438 * 4 3 2 6 6 C 1.40024 * 133.74513 * 179.97438 * 5 4 3 7 7 C 1.36885 * 118.38311 * 179.97438 * 6 5 4 8 8 C 1.39468 * 119.63736 * 0.28532 * 7 6 5 9 9 N 1.39038 * 119.41384 * 179.69757 * 8 7 6 10 10 C 1.46504 * 120.00073 * 359.97438 * 9 8 7 11 11 H 1.09002 * 109.41094 * 34.99758 * 10 9 8 12 12 C 1.52956 * 109.41428 * 154.85937 * 10 9 8 13 13 C 1.53231 * 109.40459 * 183.70455 * 12 10 9 14 14 C 1.51276 * 108.53376 * 305.37382 * 13 12 10 15 15 C 1.37880 * 120.84617 * 231.32288 * 14 13 12 16 16 N 1.31518 * 120.00260 * 0.02562 * 15 14 13 17 17 Si 1.86800 * 119.99808 * 179.97438 * 15 14 13 18 18 H 1.48507 * 109.46941 * 90.00499 * 17 15 14 19 19 H 1.48501 * 109.47070 * 209.99880 * 17 15 14 20 20 H 1.48495 * 109.47099 * 330.00260 * 17 15 14 21 21 C 1.51267 * 118.30074 * 51.34593 * 14 13 12 22 22 C 1.52965 * 109.41186 * 275.14291 * 10 9 8 23 23 N 1.32229 * 121.17319 * 359.43378 * 8 7 6 24 24 C 1.32540 * 121.34228 * 0.55142 * 23 8 7 25 25 H 1.09002 * 109.47206 * 270.03804 * 1 2 3 26 26 H 1.08996 * 109.47234 * 30.04458 * 1 2 3 27 27 H 1.09000 * 109.46823 * 150.03790 * 1 2 3 28 28 H 1.08001 * 124.98420 * 359.94851 * 3 2 1 29 29 H 1.08001 * 120.80487 * 359.97438 * 6 5 4 30 30 H 1.08002 * 120.17797 * 180.02562 * 7 6 5 31 31 H 0.97001 * 120.00313 * 179.97438 * 9 8 7 32 32 H 1.09002 * 109.48116 * 303.67906 * 12 10 9 33 33 H 1.08998 * 109.48204 * 63.71265 * 12 10 9 34 34 H 1.08999 * 109.62907 * 65.08107 * 13 12 10 35 35 H 1.08993 * 109.62983 * 185.65898 * 13 12 10 36 36 H 0.96995 * 120.00183 * 179.97438 * 16 15 14 37 37 H 1.09003 * 109.62596 * 68.36996 * 21 14 13 38 38 H 1.09001 * 109.62043 * 188.93754 * 21 14 13 39 39 H 1.09001 * 109.48233 * 296.27252 * 22 10 9 40 40 H 1.08993 * 109.48400 * 56.31156 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2712 1.0983 0.0000 4 7 3.5199 0.7344 0.0005 5 6 3.5968 -0.6210 0.0015 6 6 4.6616 -1.5303 0.0019 7 6 4.3744 -2.8687 0.0035 8 6 3.0444 -3.2886 -0.0014 9 7 2.7580 -4.6492 -0.0062 10 6 3.8486 -5.6274 -0.0066 11 1 4.6792 -5.2441 0.5861 12 6 3.3537 -6.9409 0.6011 13 6 4.5181 -7.9333 0.6857 14 6 5.1303 -8.0747 -0.6904 15 6 5.3296 -9.3185 -1.2510 16 7 4.9857 -10.4013 -0.5885 17 14 6.0868 -9.4656 -2.9523 18 1 7.5640 -9.5583 -2.8303 19 1 5.5679 -10.6857 -3.6213 20 1 5.7307 -8.2700 -3.7577 21 6 5.5186 -6.8168 -1.4353 22 6 4.3168 -5.8662 -1.4431 23 7 2.0511 -2.4159 0.0036 24 6 2.2803 -1.1104 0.0026 25 1 -0.3634 0.0007 1.0277 26 1 -0.3633 0.8895 -0.5145 27 1 -0.3633 -0.8903 -0.5133 28 1 1.9242 2.1211 -0.0008 29 1 5.6846 -1.1841 0.0011 30 1 5.1733 -3.5954 0.0043 31 1 1.8360 -4.9507 -0.0093 32 1 2.9620 -6.7539 1.6011 33 1 2.5656 -7.3574 -0.0261 34 1 5.2678 -7.5596 1.3832 35 1 4.1499 -8.9018 1.0239 36 1 5.1256 -11.2763 -0.9830 37 1 6.3609 -6.3398 -0.9341 38 1 5.7931 -7.0681 -2.4598 39 1 3.5055 -6.3089 -2.0210 40 1 4.6080 -4.9172 -1.8931 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167841055.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:32 Heat of formation + Delta-G solvation = 67.511598 kcal Electronic energy + Delta-G solvation = -22122.615788 eV Core-core repulsion = 18937.021720 eV Total energy + Delta-G solvation = -3185.594068 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 286.149 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -43.10999 -40.28419 -38.51096 -35.62895 -35.20158 -33.39310 -32.76278 -31.50834 -29.85383 -28.21477 -27.89729 -24.70206 -24.31737 -23.21717 -22.75093 -21.71595 -21.06219 -18.76147 -18.65779 -18.09866 -17.45946 -16.95875 -16.47849 -16.36519 -15.41672 -15.31226 -15.13288 -14.79020 -14.49291 -14.23322 -14.13828 -13.96869 -13.72187 -13.64683 -13.40082 -13.25937 -12.75602 -12.63610 -12.50119 -11.92413 -11.84595 -11.68744 -11.63433 -11.37241 -10.93343 -10.73356 -10.53646 -10.29748 -10.12830 -9.65012 -8.39916 -8.14474 -6.08354 0.08346 0.45212 1.40657 1.43669 1.44353 1.51269 1.94934 2.30557 2.43034 2.94655 3.14361 3.34695 3.61848 3.85464 3.97533 4.02816 4.20768 4.30296 4.33450 4.45361 4.46686 4.60956 4.74672 4.75096 4.87885 4.97489 5.00696 5.09348 5.13158 5.17598 5.26190 5.30843 5.34504 5.62257 5.62499 5.67584 5.78753 5.86061 5.99519 6.26522 6.36598 6.66329 6.89949 6.98778 7.17713 7.49834 8.96148 Molecular weight = 286.15amu Principal moments of inertia in cm(-1) A = 0.034059 B = 0.003531 C = 0.003403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 821.894893 B = 7928.428877 C = 8225.704967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.491 5.491 3 C 0.260 3.740 4 N -0.514 5.514 5 C -0.084 4.084 6 C 0.012 3.988 7 C -0.235 4.235 8 C 0.435 3.565 9 N -0.708 5.708 10 C 0.177 3.823 11 H 0.080 0.920 12 C -0.102 4.102 13 C 0.010 3.990 14 C -0.496 4.496 15 C 0.022 3.978 16 N -0.932 5.932 17 Si 0.937 3.063 18 H -0.275 1.275 19 H -0.296 1.296 20 H -0.250 1.250 21 C -0.022 4.022 22 C -0.111 4.111 23 N -0.577 5.577 24 C 0.264 3.736 25 H 0.082 0.918 26 H 0.125 0.875 27 H 0.072 0.928 28 H 0.267 0.733 29 H 0.157 0.843 30 H 0.151 0.849 31 H 0.402 0.598 32 H 0.054 0.946 33 H 0.046 0.954 34 H 0.007 0.993 35 H 0.028 0.972 36 H 0.261 0.739 37 H 0.030 0.970 38 H 0.034 0.966 39 H 0.043 0.957 40 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.794 21.374 0.484 22.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.186 5.186 3 C -0.025 4.025 4 N -0.233 5.233 5 C -0.204 4.204 6 C -0.015 4.015 7 C -0.260 4.260 8 C 0.190 3.810 9 N -0.339 5.339 10 C 0.073 3.927 11 H 0.098 0.902 12 C -0.141 4.141 13 C -0.028 4.028 14 C -0.515 4.515 15 C -0.176 4.176 16 N -0.573 5.573 17 Si 0.764 3.236 18 H -0.200 1.200 19 H -0.223 1.223 20 H -0.174 1.174 21 C -0.060 4.060 22 C -0.151 4.151 23 N -0.303 5.303 24 C 0.028 3.972 25 H 0.100 0.900 26 H 0.143 0.857 27 H 0.091 0.909 28 H 0.283 0.717 29 H 0.175 0.825 30 H 0.169 0.831 31 H 0.238 0.762 32 H 0.073 0.927 33 H 0.065 0.935 34 H 0.026 0.974 35 H 0.047 0.953 36 H 0.071 0.929 37 H 0.049 0.951 38 H 0.053 0.947 39 H 0.062 0.938 40 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -7.916 21.352 0.485 22.777 hybrid contribution -0.007 -1.305 -0.727 1.494 sum -7.923 20.047 -0.243 21.557 Atomic orbital electron populations 1.22204 0.73578 1.05781 1.04430 1.45297 1.08752 1.03647 1.60868 1.26231 0.83984 0.94178 0.98151 1.70271 1.20486 1.10220 1.22362 1.19718 0.93751 0.92016 1.14946 1.20479 0.98839 0.90352 0.91794 1.21264 0.96141 0.96804 1.11840 1.18132 0.88451 0.85174 0.89278 1.44886 1.09829 1.00506 1.78684 1.20815 0.88266 0.87113 0.96528 0.90228 1.21698 0.99207 0.94461 0.98707 1.19299 0.93204 0.95054 0.95273 1.20666 1.38435 0.90590 1.01824 1.25589 0.95985 0.95401 1.00668 1.69968 1.49371 0.98267 1.39657 0.85866 0.78939 0.77296 0.81527 1.20032 1.22325 1.17422 1.19831 0.94763 0.94409 0.96969 1.21912 0.98901 0.98279 0.95971 1.65654 1.36155 1.00111 1.28416 1.18783 0.89981 0.87381 1.01090 0.89964 0.85673 0.90906 0.71719 0.82519 0.83105 0.76229 0.92724 0.93486 0.97447 0.95311 0.92935 0.95112 0.94721 0.93776 0.92764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.95 11.19 127.77 1.43 2.38 16 2 N -0.49 -10.27 3.20 -549.45 -1.76 -12.02 16 3 C 0.26 4.69 12.51 180.00 2.25 6.94 16 4 N -0.51 -13.77 11.28 -191.74 -2.16 -15.93 16 5 C -0.08 -2.55 7.24 39.51 0.29 -2.26 16 6 C 0.01 0.34 10.16 22.39 0.23 0.57 16 7 C -0.23 -6.96 8.72 22.25 0.19 -6.76 16 8 C 0.44 13.95 7.62 133.18 1.01 14.96 16 9 N -0.71 -22.25 5.24 -324.46 -1.70 -23.95 16 10 C 0.18 6.09 2.04 44.96 0.09 6.19 16 11 H 0.08 2.69 6.42 -2.39 -0.02 2.68 16 12 C -0.10 -3.96 5.40 30.66 0.17 -3.79 16 13 C 0.01 0.46 5.97 30.11 0.18 0.64 16 14 C -0.50 -24.87 5.51 -16.17 -0.09 -24.96 16 15 C 0.02 1.16 5.46 84.65 0.46 1.62 16 16 N -0.93 -53.79 12.73 21.45 0.27 -53.52 16 17 Si 0.94 42.26 27.53 68.60 1.89 44.15 16 18 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 19 H -0.30 -13.54 7.11 99.48 0.71 -12.84 16 20 H -0.25 -10.57 6.11 99.48 0.61 -9.96 16 21 C -0.02 -0.92 5.60 30.11 0.17 -0.75 16 22 C -0.11 -4.13 5.40 30.66 0.17 -3.97 16 23 N -0.58 -18.70 10.42 -190.17 -1.98 -20.68 16 24 C 0.26 7.90 8.00 133.77 1.07 8.97 16 25 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 26 H 0.12 0.46 8.14 -2.39 -0.02 0.44 16 27 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 28 H 0.27 1.42 8.06 -2.91 -0.02 1.39 16 29 H 0.16 3.64 8.06 -2.91 -0.02 3.61 16 30 H 0.15 4.19 6.05 -2.91 -0.02 4.18 16 31 H 0.40 12.10 8.72 -92.71 -0.81 11.29 16 32 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 33 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 34 H 0.01 0.34 8.14 -2.39 -0.02 0.32 16 35 H 0.03 1.53 7.07 -2.39 -0.02 1.52 16 36 H 0.26 14.45 8.31 -92.71 -0.77 13.68 16 37 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 38 H 0.03 1.48 4.59 -2.39 -0.01 1.47 16 39 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 40 H 0.05 1.84 7.67 -2.39 -0.02 1.82 16 Total: -1.00 -67.79 321.63 2.33 -65.46 By element: Atomic # 1 Polarization: 16.56 SS G_CDS: 0.16 Total: 16.72 kcal Atomic # 6 Polarization: -7.85 SS G_CDS: 7.62 Total: -0.23 kcal Atomic # 7 Polarization: -118.76 SS G_CDS: -7.33 Total: -126.10 kcal Atomic # 14 Polarization: 42.26 SS G_CDS: 1.89 Total: 44.15 kcal Total: -67.79 2.33 -65.46 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167841055.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.972 kcal (2) G-P(sol) polarization free energy of solvation -67.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.460 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds