Wall clock time and date at job start Tue Mar 31 2020 05:34:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50692 * 109.47317 * 2 1 4 4 N 1.31571 * 118.99769 * 269.98209 * 3 2 1 5 5 C 1.33426 * 120.90043 * 180.02562 * 4 3 2 6 6 C 1.43197 * 120.52179 * 180.02562 * 5 4 3 7 7 N 5.83667 * 105.60716 * 322.14965 * 2 1 3 8 8 C 1.39297 * 118.95300 * 359.71984 * 5 4 3 9 9 C 1.39651 * 118.18885 * 0.53499 * 8 5 4 10 10 N 1.38547 * 120.50185 * 179.73692 * 9 8 5 11 11 C 1.46499 * 119.99684 * 359.44928 * 10 9 8 12 12 H 1.09004 * 109.41612 * 35.41672 * 11 10 9 13 13 C 1.52958 * 109.41227 * 155.27810 * 11 10 9 14 14 C 1.53237 * 109.40281 * 183.70603 * 13 11 10 15 15 C 1.51274 * 108.53501 * 305.36824 * 14 13 11 16 16 C 1.37876 * 120.84766 * 231.32564 * 15 14 13 17 17 N 1.31513 * 120.00094 * 0.02562 * 16 15 14 18 18 Si 1.86801 * 119.99691 * 180.02562 * 16 15 14 19 19 H 1.48498 * 109.47243 * 90.00249 * 18 16 15 20 20 H 1.48503 * 109.47065 * 210.00075 * 18 16 15 21 21 H 1.48500 * 109.47266 * 329.99760 * 18 16 15 22 22 C 1.51268 * 118.29891 * 51.35075 * 15 14 13 23 23 C 1.52966 * 109.41578 * 275.62646 * 11 10 9 24 24 N 1.31832 * 118.99258 * 89.99535 * 3 2 1 25 25 H 1.09004 * 109.46956 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.46862 * 299.99802 * 1 2 3 27 27 H 1.09004 * 109.46959 * 60.00127 * 1 2 3 28 28 H 1.09004 * 109.46574 * 239.99960 * 2 1 3 29 29 H 1.09003 * 109.46832 * 120.00407 * 2 1 3 30 30 H 1.08007 * 120.90174 * 180.27543 * 8 5 4 31 31 H 0.97001 * 120.00466 * 179.73000 * 10 9 8 32 32 H 1.09000 * 109.48530 * 303.68004 * 13 11 10 33 33 H 1.08999 * 109.48608 * 63.71370 * 13 11 10 34 34 H 1.08994 * 109.62590 * 65.08331 * 14 13 11 35 35 H 1.08999 * 109.62255 * 185.46836 * 14 13 11 36 36 H 0.97001 * 119.99523 * 179.97438 * 17 16 15 37 37 H 1.09002 * 109.62401 * 68.36432 * 22 15 14 38 38 H 1.08999 * 109.62327 * 188.74343 * 22 15 14 39 39 H 1.08991 * 109.48424 * 296.27841 * 23 11 10 40 40 H 1.09001 * 109.47760 * 56.31999 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 7 2.2454 2.0219 -1.1508 5 6 2.6904 3.2790 -1.1951 6 6 2.9189 3.9257 -2.4521 7 7 3.1004 4.4388 -3.4493 8 6 2.9231 3.9545 0.0007 9 6 2.6887 3.2755 1.1983 10 7 2.9095 3.8996 2.4154 11 6 3.4040 5.2782 2.4525 12 1 2.9746 5.8396 1.6227 13 6 2.9935 5.9301 3.7739 14 6 3.4300 7.3990 3.7741 15 6 4.9133 7.4599 3.4834 16 6 5.7651 8.1727 4.3002 17 7 5.2910 8.8105 5.3480 18 14 7.5927 8.2325 3.9185 19 1 7.8756 9.3895 3.0316 20 1 8.3579 8.3792 5.1827 21 1 7.9976 6.9763 3.2378 22 6 5.4378 6.7192 2.2733 23 6 4.9285 5.2751 2.3275 24 7 2.2453 2.0232 1.1531 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 3.2792 4.9742 0.0016 31 1 2.7406 3.4226 3.2429 32 1 1.9109 5.8726 3.8868 33 1 3.4735 5.4079 4.6016 34 1 2.8833 7.9434 3.0043 35 1 3.2268 7.8411 4.7495 36 1 5.8904 9.3117 5.9228 37 1 5.0770 7.2008 1.3644 38 1 6.5277 6.7267 2.2836 39 1 5.3629 4.7685 3.1893 40 1 5.2173 4.7533 1.4151 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167844358.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:20 Heat of formation + Delta-G solvation = 62.076388 kcal Electronic energy + Delta-G solvation = -21923.670517 eV Core-core repulsion = 18737.840761 eV Total energy + Delta-G solvation = -3185.829756 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 286.149 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.18330 -38.09798 -36.88452 -35.28810 -34.16418 -32.90408 -31.45958 -30.36554 -29.72432 -27.31752 -25.55018 -24.76736 -22.68052 -21.72840 -21.14438 -19.78601 -19.23723 -18.13551 -16.34091 -15.98228 -15.52646 -15.37805 -14.85740 -14.62051 -14.54428 -14.10241 -13.74677 -13.46916 -13.31975 -13.11631 -12.96834 -12.70434 -12.46506 -12.26924 -12.00169 -11.79863 -11.42160 -11.23997 -11.17802 -10.85529 -10.83019 -10.73865 -10.32778 -10.15451 -9.86733 -9.57623 -9.43057 -9.13436 -8.89278 -8.60350 -8.00773 -6.23102 -4.15685 0.46211 1.17532 2.33499 2.84133 2.98398 3.19322 3.27535 3.28730 3.33025 3.84686 4.04972 4.27206 4.56860 4.77990 4.99466 5.03585 5.12264 5.15904 5.26826 5.40651 5.48829 5.59787 5.68935 5.85366 5.87207 5.94738 6.10311 6.25756 6.33843 6.49916 6.54637 6.64294 6.73630 6.86023 6.96116 7.16128 7.22651 7.28368 7.48847 7.53483 7.62326 7.70450 8.16362 8.22119 8.81974 9.40964 10.86081 Molecular weight = 286.15amu Principal moments of inertia in cm(-1) A = 0.021645 B = 0.003996 C = 0.003628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1293.318748 B = 7004.590554 C = 7716.356211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.053 4.053 3 C 0.371 3.629 4 N -0.543 5.543 5 C 0.269 3.731 6 C 0.272 3.728 7 N -0.383 5.383 8 C -0.242 4.242 9 C 0.455 3.545 10 N -0.690 5.690 11 C 0.153 3.847 12 H 0.076 0.924 13 C -0.113 4.113 14 C 0.014 3.986 15 C -0.493 4.493 16 C 0.079 3.921 17 N -0.887 5.887 18 Si 0.886 3.114 19 H -0.277 1.277 20 H -0.289 1.289 21 H -0.264 1.264 22 C -0.019 4.019 23 C -0.120 4.120 24 N -0.570 5.570 25 H 0.065 0.935 26 H 0.059 0.941 27 H 0.058 0.942 28 H 0.091 0.909 29 H 0.092 0.908 30 H 0.156 0.844 31 H 0.407 0.593 32 H 0.039 0.961 33 H 0.058 0.942 34 H 0.007 0.993 35 H 0.063 0.937 36 H 0.266 0.734 37 H 0.018 0.982 38 H 0.039 0.961 39 H 0.058 0.942 40 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.538 -13.777 -6.180 16.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.092 4.092 3 C 0.101 3.899 4 N -0.265 5.265 5 C 0.126 3.874 6 C -0.046 4.046 7 N -0.059 5.059 8 C -0.275 4.275 9 C 0.207 3.793 10 N -0.319 5.319 11 C 0.050 3.950 12 H 0.094 0.906 13 C -0.152 4.152 14 C -0.024 4.024 15 C -0.512 4.512 16 C -0.125 4.125 17 N -0.524 5.524 18 Si 0.715 3.285 19 H -0.203 1.203 20 H -0.216 1.216 21 H -0.189 1.189 22 C -0.057 4.057 23 C -0.159 4.159 24 N -0.295 5.295 25 H 0.084 0.916 26 H 0.078 0.922 27 H 0.077 0.923 28 H 0.109 0.891 29 H 0.110 0.890 30 H 0.173 0.827 31 H 0.244 0.756 32 H 0.058 0.942 33 H 0.077 0.923 34 H 0.025 0.975 35 H 0.081 0.919 36 H 0.076 0.924 37 H 0.037 0.963 38 H 0.057 0.943 39 H 0.077 0.923 40 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -6.455 -13.536 -7.526 16.779 hybrid contribution 1.269 0.621 0.666 1.562 sum -5.186 -12.915 -6.860 15.516 Atomic orbital electron populations 1.21688 0.93548 1.02371 1.02573 1.20353 0.96753 0.87830 1.04274 1.22731 0.89012 0.96343 0.81781 1.68113 1.19012 1.08673 1.30681 1.16157 0.94763 0.89855 0.86626 1.24846 0.94421 0.93347 0.91937 1.81240 1.06610 1.08352 1.09732 1.22179 1.10414 1.03702 0.91164 1.18468 0.86156 0.87491 0.87152 1.45326 1.67105 1.15319 1.04107 1.21351 0.95012 0.77946 1.00654 0.90555 1.21937 0.97965 1.01018 0.94257 1.19341 0.94802 0.89069 0.99191 1.19992 0.92776 1.29848 1.08596 1.24843 0.98526 0.94683 0.94423 1.69822 1.35637 1.31954 1.14984 0.86689 0.85371 0.78805 0.77673 1.20308 1.21557 1.18937 1.19800 0.97223 0.91302 0.97416 1.22042 0.93802 1.00337 0.99695 1.67784 1.21384 1.09452 1.30909 0.91553 0.92184 0.92268 0.89063 0.88994 0.82667 0.75625 0.94200 0.92296 0.97486 0.91889 0.92420 0.96319 0.94312 0.92299 0.94551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.13 9.90 37.16 0.37 -0.76 16 2 C -0.05 -0.47 6.36 -27.88 -0.18 -0.65 16 3 C 0.37 4.64 6.89 -157.36 -1.08 3.56 16 4 N -0.54 -7.32 10.27 -8.79 -0.09 -7.41 16 5 C 0.27 3.65 6.61 -84.86 -0.56 3.09 16 6 C 0.27 3.80 15.59 -22.47 -0.35 3.45 16 7 N -0.38 -5.80 18.54 41.84 0.78 -5.02 16 8 C -0.24 -3.30 8.61 -38.66 -0.33 -3.63 16 9 C 0.45 6.36 7.68 -154.82 -1.19 5.17 16 10 N -0.69 -9.61 5.23 -53.83 -0.28 -9.89 16 11 C 0.15 2.47 2.06 -67.97 -0.14 2.33 16 12 H 0.08 1.23 6.51 -51.93 -0.34 0.89 16 13 C -0.11 -2.04 5.40 -26.63 -0.14 -2.18 16 14 C 0.01 0.31 5.96 -27.48 -0.16 0.15 16 15 C -0.49 -11.86 5.51 -98.92 -0.55 -12.41 16 16 C 0.08 2.02 5.46 -17.82 -0.10 1.92 16 17 N -0.89 -24.11 12.73 55.43 0.71 -23.40 16 18 Si 0.89 19.96 27.53 -169.99 -4.68 15.28 16 19 H -0.28 -6.26 7.11 56.52 0.40 -5.85 16 20 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 21 H -0.26 -5.74 6.11 56.52 0.35 -5.39 16 22 C -0.02 -0.41 5.59 -27.49 -0.15 -0.56 16 23 C -0.12 -2.14 5.46 -26.63 -0.15 -2.28 16 24 N -0.57 -7.71 10.35 -10.00 -0.10 -7.81 16 25 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 27 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.16 2.05 6.35 -52.48 -0.33 1.72 16 31 H 0.41 5.24 8.72 -40.82 -0.36 4.88 16 32 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 34 H 0.01 0.15 8.14 -51.93 -0.42 -0.27 16 35 H 0.06 1.57 7.08 -51.93 -0.37 1.20 16 36 H 0.27 6.90 8.31 -40.82 -0.34 6.57 16 37 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 38 H 0.04 0.83 4.59 -51.93 -0.24 0.59 16 39 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 40 H 0.04 0.60 7.76 -51.93 -0.40 0.19 16 LS Contribution 332.81 15.07 5.02 5.02 Total: -1.00 -26.61 332.81 -8.83 -35.44 By element: Atomic # 1 Polarization: 6.07 SS G_CDS: -5.46 Total: 0.61 kcal Atomic # 6 Polarization: 1.90 SS G_CDS: -4.72 Total: -2.82 kcal Atomic # 7 Polarization: -54.54 SS G_CDS: 1.01 Total: -53.53 kcal Atomic # 14 Polarization: 19.96 SS G_CDS: -4.68 Total: 15.28 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -26.61 -8.83 -35.44 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167844358.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.517 kcal (2) G-P(sol) polarization free energy of solvation -26.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.441 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds