Wall clock time and date at job start Tue Mar 31 2020 05:34:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50692 * 109.47317 * 2 1 4 4 N 1.31571 * 118.99769 * 269.98209 * 3 2 1 5 5 C 1.33426 * 120.90043 * 180.02562 * 4 3 2 6 6 C 1.43197 * 120.52179 * 180.02562 * 5 4 3 7 7 N 5.83667 * 105.60716 * 322.14965 * 2 1 3 8 8 C 1.39297 * 118.95300 * 359.71984 * 5 4 3 9 9 C 1.39651 * 118.18885 * 0.53499 * 8 5 4 10 10 N 1.38547 * 120.50185 * 179.73692 * 9 8 5 11 11 C 1.46499 * 119.99684 * 359.44928 * 10 9 8 12 12 H 1.09004 * 109.41612 * 35.41672 * 11 10 9 13 13 C 1.52958 * 109.41227 * 155.27810 * 11 10 9 14 14 C 1.53237 * 109.40281 * 183.70603 * 13 11 10 15 15 C 1.51274 * 108.53501 * 305.36824 * 14 13 11 16 16 C 1.37876 * 120.84766 * 231.32564 * 15 14 13 17 17 N 1.31513 * 120.00094 * 0.02562 * 16 15 14 18 18 Si 1.86801 * 119.99691 * 180.02562 * 16 15 14 19 19 H 1.48498 * 109.47243 * 90.00249 * 18 16 15 20 20 H 1.48503 * 109.47065 * 210.00075 * 18 16 15 21 21 H 1.48500 * 109.47266 * 329.99760 * 18 16 15 22 22 C 1.51268 * 118.29891 * 51.35075 * 15 14 13 23 23 C 1.52966 * 109.41578 * 275.62646 * 11 10 9 24 24 N 1.31832 * 118.99258 * 89.99535 * 3 2 1 25 25 H 1.09004 * 109.46956 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.46862 * 299.99802 * 1 2 3 27 27 H 1.09004 * 109.46959 * 60.00127 * 1 2 3 28 28 H 1.09004 * 109.46574 * 239.99960 * 2 1 3 29 29 H 1.09003 * 109.46832 * 120.00407 * 2 1 3 30 30 H 1.08007 * 120.90174 * 180.27543 * 8 5 4 31 31 H 0.97001 * 120.00466 * 179.73000 * 10 9 8 32 32 H 1.09000 * 109.48530 * 303.68004 * 13 11 10 33 33 H 1.08999 * 109.48608 * 63.71370 * 13 11 10 34 34 H 1.08994 * 109.62590 * 65.08331 * 14 13 11 35 35 H 1.08999 * 109.62255 * 185.46836 * 14 13 11 36 36 H 0.97001 * 119.99523 * 179.97438 * 17 16 15 37 37 H 1.09002 * 109.62401 * 68.36432 * 22 15 14 38 38 H 1.08999 * 109.62327 * 188.74343 * 22 15 14 39 39 H 1.08991 * 109.48424 * 296.27841 * 23 11 10 40 40 H 1.09001 * 109.47760 * 56.31999 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 7 2.2454 2.0219 -1.1508 5 6 2.6904 3.2790 -1.1951 6 6 2.9189 3.9257 -2.4521 7 7 3.1004 4.4388 -3.4493 8 6 2.9231 3.9545 0.0007 9 6 2.6887 3.2755 1.1983 10 7 2.9095 3.8996 2.4154 11 6 3.4040 5.2782 2.4525 12 1 2.9746 5.8396 1.6227 13 6 2.9935 5.9301 3.7739 14 6 3.4300 7.3990 3.7741 15 6 4.9133 7.4599 3.4834 16 6 5.7651 8.1727 4.3002 17 7 5.2910 8.8105 5.3480 18 14 7.5927 8.2325 3.9185 19 1 7.8756 9.3895 3.0316 20 1 8.3579 8.3792 5.1827 21 1 7.9976 6.9763 3.2378 22 6 5.4378 6.7192 2.2733 23 6 4.9285 5.2751 2.3275 24 7 2.2453 2.0232 1.1531 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 3.2792 4.9742 0.0016 31 1 2.7406 3.4226 3.2429 32 1 1.9109 5.8726 3.8868 33 1 3.4735 5.4079 4.6016 34 1 2.8833 7.9434 3.0043 35 1 3.2268 7.8411 4.7495 36 1 5.8904 9.3117 5.9228 37 1 5.0770 7.2008 1.3644 38 1 6.5277 6.7267 2.2836 39 1 5.3629 4.7685 3.1893 40 1 5.2173 4.7533 1.4151 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167844358.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:20 Heat of formation + Delta-G solvation = 48.230664 kcal Electronic energy + Delta-G solvation = -21924.270913 eV Core-core repulsion = 18737.840761 eV Total energy + Delta-G solvation = -3186.430152 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 286.149 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.22468 -39.45697 -38.01271 -36.62380 -35.09168 -34.35140 -32.82122 -31.65223 -31.07852 -28.87311 -26.58625 -25.72594 -24.07926 -23.30679 -22.32745 -21.22595 -20.30367 -19.28485 -17.97831 -17.17883 -16.55061 -16.49948 -16.34103 -16.12512 -15.49931 -15.11336 -14.81275 -14.75980 -14.59652 -14.36679 -14.28147 -14.12324 -13.97311 -13.59962 -13.31480 -12.81341 -12.78125 -12.59274 -12.55366 -12.17915 -11.99707 -11.86521 -11.85573 -11.57806 -11.34541 -10.94975 -10.77130 -10.59190 -10.49519 -10.45690 -9.16568 -8.15969 -6.09836 -0.59552 0.13676 1.23789 1.39608 1.43846 1.49791 1.75788 1.86861 2.23766 2.41576 2.81732 3.12044 3.14298 3.52450 3.75690 3.94578 4.13820 4.15091 4.27732 4.45991 4.47491 4.48603 4.65347 4.73156 4.89070 4.97674 5.00502 5.07061 5.11945 5.20462 5.21795 5.27131 5.28597 5.45290 5.60510 5.61819 5.68935 5.77411 5.85117 6.04817 6.16353 6.34561 6.56507 6.97781 7.13325 7.48707 8.94486 Molecular weight = 286.15amu Principal moments of inertia in cm(-1) A = 0.021645 B = 0.003996 C = 0.003628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1293.318748 B = 7004.590554 C = 7716.356211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.053 4.053 3 C 0.368 3.632 4 N -0.550 5.550 5 C 0.268 3.732 6 C 0.287 3.713 7 N -0.405 5.405 8 C -0.245 4.245 9 C 0.450 3.550 10 N -0.685 5.685 11 C 0.168 3.832 12 H 0.083 0.917 13 C -0.102 4.102 14 C 0.009 3.991 15 C -0.496 4.496 16 C 0.024 3.976 17 N -0.930 5.930 18 Si 0.933 3.067 19 H -0.278 1.278 20 H -0.296 1.296 21 H -0.248 1.248 22 C -0.023 4.023 23 C -0.113 4.113 24 N -0.573 5.573 25 H 0.089 0.911 26 H 0.050 0.950 27 H 0.050 0.950 28 H 0.104 0.896 29 H 0.104 0.896 30 H 0.160 0.840 31 H 0.414 0.586 32 H 0.059 0.941 33 H 0.052 0.948 34 H 0.006 0.994 35 H 0.029 0.971 36 H 0.262 0.738 37 H 0.027 0.973 38 H 0.034 0.966 39 H 0.051 0.949 40 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.861 -16.062 -7.443 18.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.092 4.092 3 C 0.098 3.902 4 N -0.271 5.271 5 C 0.125 3.875 6 C -0.030 4.030 7 N -0.082 5.082 8 C -0.277 4.277 9 C 0.203 3.797 10 N -0.314 5.314 11 C 0.064 3.936 12 H 0.100 0.900 13 C -0.140 4.140 14 C -0.029 4.029 15 C -0.516 4.516 16 C -0.174 4.174 17 N -0.571 5.571 18 Si 0.761 3.239 19 H -0.204 1.204 20 H -0.223 1.223 21 H -0.173 1.173 22 C -0.061 4.061 23 C -0.152 4.152 24 N -0.298 5.298 25 H 0.108 0.892 26 H 0.069 0.931 27 H 0.069 0.931 28 H 0.122 0.878 29 H 0.122 0.878 30 H 0.178 0.822 31 H 0.252 0.748 32 H 0.078 0.922 33 H 0.070 0.930 34 H 0.024 0.976 35 H 0.047 0.953 36 H 0.071 0.929 37 H 0.045 0.955 38 H 0.053 0.947 39 H 0.070 0.930 40 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -6.786 -15.861 -8.815 19.373 hybrid contribution 1.277 1.280 1.006 2.069 sum -5.509 -14.581 -7.809 17.434 Atomic orbital electron populations 1.21663 0.92669 1.03667 1.01682 1.20539 0.97334 0.85777 1.05510 1.23449 0.88097 0.97484 0.81123 1.68179 1.19105 1.08604 1.31258 1.16152 0.94902 0.90057 0.86371 1.24851 0.93709 0.92754 0.91722 1.81257 1.07446 1.09108 1.10411 1.22204 1.10537 1.03903 0.91017 1.18510 0.86363 0.87831 0.86991 1.44955 1.67454 1.14444 1.04580 1.20971 0.93950 0.79127 0.99525 0.89952 1.21690 0.99128 0.97902 0.95309 1.19298 0.94442 0.91958 0.97211 1.20644 0.93586 1.28450 1.08871 1.25550 1.01959 0.95151 0.94768 1.69959 1.36564 1.33988 1.16541 0.85920 0.81648 0.79251 0.77121 1.20418 1.22315 1.17261 1.19827 0.97045 0.93069 0.96190 1.21913 0.94863 0.98067 1.00369 1.67846 1.21376 1.09224 1.31401 0.89217 0.93062 0.93111 0.87800 0.87765 0.82230 0.74840 0.92189 0.92952 0.97571 0.95256 0.92927 0.95450 0.94727 0.93049 0.92563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.81 9.90 71.98 0.71 -1.09 16 2 C -0.05 -0.78 6.36 29.85 0.19 -0.59 16 3 C 0.37 8.24 6.89 138.80 0.96 9.20 16 4 N -0.55 -13.55 10.27 -181.74 -1.87 -15.42 16 5 C 0.27 6.71 6.61 40.40 0.27 6.98 16 6 C 0.29 7.53 15.59 88.33 1.38 8.91 16 7 N -0.41 -11.74 18.54 19.00 0.35 -11.39 16 8 C -0.24 -6.05 8.61 22.87 0.20 -5.85 16 9 C 0.45 11.40 7.68 133.19 1.02 12.42 16 10 N -0.69 -17.24 5.23 -324.21 -1.69 -18.94 16 11 C 0.17 5.03 2.06 44.97 0.09 5.12 16 12 H 0.08 2.42 6.51 -2.39 -0.02 2.41 16 13 C -0.10 -3.53 5.40 30.66 0.17 -3.36 16 14 C 0.01 0.40 5.96 30.11 0.18 0.58 16 15 C -0.50 -23.79 5.51 -16.17 -0.09 -23.88 16 16 C 0.02 1.25 5.46 84.65 0.46 1.71 16 17 N -0.93 -52.23 12.73 21.45 0.27 -51.96 16 18 Si 0.93 41.11 27.53 68.60 1.89 43.00 16 19 H -0.28 -12.18 7.11 99.48 0.71 -11.48 16 20 H -0.30 -13.26 7.11 99.48 0.71 -12.56 16 21 H -0.25 -10.17 6.11 99.48 0.61 -9.56 16 22 C -0.02 -0.94 5.59 30.10 0.17 -0.77 16 23 C -0.11 -3.76 5.46 30.66 0.17 -3.59 16 24 N -0.57 -13.99 10.35 -185.56 -1.92 -15.91 16 25 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 26 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 27 H 0.05 0.75 8.14 -2.38 -0.02 0.73 16 28 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 29 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 30 H 0.16 3.79 6.35 -2.91 -0.02 3.77 16 31 H 0.41 9.55 8.72 -92.71 -0.81 8.74 16 32 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 33 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 34 H 0.01 0.26 8.14 -2.39 -0.02 0.24 16 35 H 0.03 1.49 7.08 -2.39 -0.02 1.47 16 36 H 0.26 14.12 8.31 -92.71 -0.77 13.35 16 37 H 0.03 1.05 8.14 -2.39 -0.02 1.04 16 38 H 0.03 1.41 4.59 -2.39 -0.01 1.40 16 39 H 0.05 1.79 8.14 -2.39 -0.02 1.78 16 40 H 0.06 1.67 7.76 -2.39 -0.02 1.65 16 Total: -1.00 -57.16 332.81 3.07 -54.09 By element: Atomic # 1 Polarization: 10.58 SS G_CDS: 0.17 Total: 10.75 kcal Atomic # 6 Polarization: -0.10 SS G_CDS: 5.87 Total: 5.77 kcal Atomic # 7 Polarization: -108.76 SS G_CDS: -4.86 Total: -113.62 kcal Atomic # 14 Polarization: 41.11 SS G_CDS: 1.89 Total: 43.00 kcal Total: -57.16 3.07 -54.09 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167844358.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.319 kcal (2) G-P(sol) polarization free energy of solvation -57.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.089 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds