Wall clock time and date at job start Tue Mar 31 2020 05:58:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.48717 * 111.00152 * 2 1 4 4 H 1.08993 * 112.23532 * 44.15454 * 3 2 1 5 5 C 1.54612 * 104.22010 * 282.48757 * 3 2 1 6 6 C 1.54284 * 104.84478 * 334.81898 * 5 3 2 7 7 C 1.48716 * 110.99876 * 245.52995 * 2 1 3 8 8 H 1.09003 * 112.74852 * 315.55612 * 7 2 1 9 9 C 1.53718 * 107.23889 * 191.65885 * 7 2 1 10 10 C 1.53132 * 108.88481 * 295.90933 * 9 7 2 11 11 H 1.09000 * 109.43274 * 174.04057 * 10 9 7 12 12 N 1.46499 * 109.43095 * 293.93811 * 10 9 7 13 13 C 1.38233 * 120.00006 * 234.04899 * 12 10 9 14 14 C 1.38990 * 119.99983 * 170.88717 * 13 12 10 15 15 H 1.07998 * 119.99699 * 116.26878 * 14 13 12 16 16 C 1.40814 * 119.99664 * 296.26207 * 14 13 12 17 17 N 1.30345 * 120.00452 * 323.31731 * 16 14 13 18 18 Si 1.86803 * 119.99769 * 143.31759 * 16 14 13 19 19 H 1.48500 * 109.47089 * 269.99878 * 18 16 14 20 20 H 1.48501 * 109.47228 * 30.00153 * 18 16 14 21 21 H 1.48502 * 109.46742 * 149.99910 * 18 16 14 22 22 C 1.41157 * 119.99935 * 350.88116 * 13 12 10 23 23 C 1.43198 * 119.99861 * 42.96071 * 22 13 12 24 24 N 5.73201 * 171.90160 * 243.56829 * 2 1 3 25 25 C 1.43195 * 120.00332 * 222.95928 * 22 13 12 26 26 N 7.84678 * 146.89939 * 333.25241 * 2 1 3 27 27 C 1.53139 * 109.68654 * 53.98851 * 10 9 7 28 28 H 1.08997 * 109.47393 * 174.46658 * 1 2 3 29 29 H 1.09001 * 109.47259 * 294.47270 * 1 2 3 30 30 H 1.09006 * 109.47025 * 54.46788 * 1 2 3 31 31 H 1.08997 * 110.36508 * 215.97702 * 5 3 2 32 32 H 1.09004 * 110.45678 * 93.71162 * 5 3 2 33 33 H 1.08994 * 110.36837 * 241.16123 * 6 5 3 34 34 H 1.09001 * 110.36339 * 118.83934 * 6 5 3 35 35 H 1.08998 * 109.56712 * 176.08916 * 9 7 2 36 36 H 1.08992 * 109.56704 * 55.72907 * 9 7 2 37 37 H 0.96997 * 120.00278 * 54.04410 * 12 10 9 38 38 H 0.96995 * 119.99384 * 0.71504 * 17 16 14 39 39 H 1.09004 * 109.57113 * 65.83577 * 27 10 9 40 40 H 1.09005 * 109.57054 * 186.18446 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0019 1.3884 0.0000 4 1 1.4740 2.0328 0.7028 5 6 1.8355 1.8591 -1.4633 6 6 1.8355 0.5617 -2.2983 7 6 2.0019 -0.5751 -1.2637 8 1 1.4829 -1.4853 -1.5644 9 6 3.5075 -0.8079 -1.0589 10 6 4.1937 0.5445 -0.8463 11 1 5.2421 0.3836 -0.5953 12 7 4.1028 1.3358 -2.0758 13 6 5.2480 1.8558 -2.6494 14 6 5.1902 2.4416 -3.9084 15 1 5.4131 3.4918 -4.0260 16 6 4.8413 1.6658 -5.0306 17 7 5.2438 0.4292 -5.1187 18 14 3.8014 2.4089 -6.3929 19 1 2.3638 2.1808 -6.0988 20 1 4.0642 3.8681 -6.4764 21 1 4.1497 1.7684 -7.6867 22 6 6.4760 1.7918 -1.9563 23 6 6.8484 0.5923 -1.2686 24 7 7.1438 -0.3594 -0.7231 25 6 7.3494 2.9265 -1.9408 26 7 8.0423 3.8267 -1.9286 27 6 3.5063 1.2978 0.2962 28 1 -0.3634 -1.0228 -0.0991 29 1 -0.3634 0.4257 0.9353 30 1 -0.3633 0.5973 -0.8364 31 1 2.6701 2.4971 -1.7538 32 1 0.8918 2.3903 -1.5876 33 1 2.6702 0.5618 -2.9993 34 1 0.8911 0.4539 -2.8317 35 1 3.9248 -1.2944 -1.9405 36 1 3.6637 -1.4381 -0.1835 37 1 3.2390 1.4948 -2.4875 38 1 5.7750 0.0402 -4.4065 39 1 3.6625 0.7623 1.2327 40 1 3.9230 2.3020 0.3742 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001169101099.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:20 Heat of formation + Delta-G solvation = 157.704096 kcal Electronic energy + Delta-G solvation = -23816.084523 eV Core-core repulsion = 20634.401496 eV Total energy + Delta-G solvation = -3181.683028 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 286.149 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.77537 -37.42110 -35.17333 -34.83945 -34.02805 -31.92808 -31.50310 -31.27508 -28.96405 -26.68455 -25.37365 -24.09374 -22.27088 -21.12647 -20.52287 -19.92605 -18.73462 -17.85599 -16.57994 -16.01858 -14.94102 -14.41951 -14.31813 -14.20891 -13.81847 -13.74867 -13.71485 -13.24290 -12.77762 -12.56769 -12.50033 -12.34366 -12.09551 -11.96470 -11.68998 -11.61531 -11.47304 -11.38596 -11.32684 -11.07139 -10.95232 -10.89699 -10.63881 -10.55700 -10.31916 -10.26863 -9.55951 -9.25979 -8.89946 -8.55421 -7.70510 -6.51305 -5.08688 2.31106 2.93271 2.99217 3.17423 3.74079 3.84664 3.87219 3.93125 4.04238 4.35973 4.43154 4.58256 4.66627 4.82081 5.03937 5.11195 5.21864 5.23908 5.30991 5.35527 5.38539 5.43762 5.60037 5.67045 5.76749 5.77209 5.90000 5.97736 6.06103 6.10768 6.16370 6.28442 6.37457 6.38854 6.53676 6.83123 6.94520 7.05876 7.19409 7.43925 7.78208 8.00081 8.28335 8.42514 8.93093 9.23847 9.62494 Molecular weight = 286.15amu Principal moments of inertia in cm(-1) A = 0.013307 B = 0.008385 C = 0.006194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2103.695545 B = 3338.415732 C = 4519.108369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 N -0.505 5.505 3 C 0.067 3.933 4 H 0.092 0.908 5 C -0.183 4.183 6 C -0.189 4.189 7 C 0.068 3.932 8 H 0.092 0.908 9 C -0.117 4.117 10 C 0.102 3.898 11 H 0.121 0.879 12 N -0.718 5.718 13 C 0.481 3.519 14 C -0.600 4.600 15 H 0.111 0.889 16 C 0.064 3.936 17 N -0.762 5.762 18 Si 1.054 2.946 19 H -0.272 1.272 20 H -0.270 1.270 21 H -0.273 1.273 22 C -0.363 4.363 23 C 0.316 3.684 24 N -0.542 5.542 25 C 0.332 3.668 26 N -0.544 5.544 27 C -0.112 4.112 28 H 0.064 0.936 29 H 0.065 0.935 30 H 0.029 0.971 31 H 0.112 0.888 32 H 0.066 0.934 33 H 0.110 0.890 34 H 0.067 0.933 35 H 0.070 0.930 36 H 0.079 0.921 37 H 0.424 0.576 38 H 0.301 0.699 39 H 0.077 0.923 40 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.747 -1.044 2.900 15.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 N -0.228 5.228 3 C -0.041 4.041 4 H 0.110 0.890 5 C -0.223 4.223 6 C -0.229 4.229 7 C -0.041 4.041 8 H 0.110 0.890 9 C -0.156 4.156 10 C -0.004 4.004 11 H 0.138 0.862 12 N -0.359 5.359 13 C 0.358 3.642 14 C -0.632 4.632 15 H 0.128 0.872 16 C -0.164 4.164 17 N -0.383 5.383 18 Si 0.877 3.123 19 H -0.198 1.198 20 H -0.194 1.194 21 H -0.198 1.198 22 C -0.385 4.385 23 C 0.013 3.987 24 N -0.227 5.227 25 C 0.025 3.975 26 N -0.227 5.227 27 C -0.151 4.151 28 H 0.083 0.917 29 H 0.084 0.916 30 H 0.048 0.952 31 H 0.129 0.871 32 H 0.084 0.916 33 H 0.128 0.872 34 H 0.086 0.914 35 H 0.088 0.912 36 H 0.097 0.903 37 H 0.285 0.715 38 H 0.114 0.886 39 H 0.096 0.904 40 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -13.790 -1.949 2.962 14.239 hybrid contribution -0.347 0.681 0.282 0.815 sum -14.138 -1.268 3.245 14.560 Atomic orbital electron populations 1.22459 0.88778 1.01580 1.00830 1.65460 1.07503 1.15686 1.34102 1.23030 0.96462 0.89292 0.95363 0.88980 1.23625 1.03670 0.98332 0.96629 1.23665 1.03522 0.95545 1.00165 1.23035 0.96403 0.96907 0.87771 0.89012 1.22043 0.93258 0.97587 1.02718 1.21785 1.03253 0.89923 0.85408 0.86236 1.49179 1.09157 1.53615 1.23934 1.17760 0.83615 0.74738 0.88112 1.20038 1.51065 1.01525 0.90611 0.87186 1.26906 0.94813 0.93672 1.00969 1.70353 1.20592 1.14929 1.32418 0.83781 0.76206 0.77001 0.75317 1.19789 1.19446 1.19771 1.12817 0.99940 0.90832 1.34875 1.24737 0.91500 0.92208 0.90261 1.81176 1.10368 1.13214 1.17959 1.24603 0.90875 0.91638 0.90351 1.81034 1.11909 1.12917 1.16887 1.21978 0.93051 1.01434 0.98609 0.91682 0.91592 0.95210 0.87064 0.91577 0.87220 0.91385 0.91171 0.90265 0.71504 0.88632 0.90430 0.90578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.12 9.45 60.06 0.57 0.69 16 2 N -0.51 -6.14 5.29 -221.17 -1.17 -7.31 16 3 C 0.07 0.82 3.68 -65.55 -0.24 0.58 16 4 H 0.09 1.01 8.10 -51.93 -0.42 0.58 16 5 C -0.18 -2.28 5.07 -25.21 -0.13 -2.41 16 6 C -0.19 -2.47 5.10 -25.21 -0.13 -2.60 16 7 C 0.07 0.87 3.67 -65.49 -0.24 0.63 16 8 H 0.09 1.10 8.11 -51.93 -0.42 0.68 16 9 C -0.12 -1.77 5.49 -26.29 -0.14 -1.92 16 10 C 0.10 1.68 2.84 -67.79 -0.19 1.48 16 11 H 0.12 2.28 2.95 -58.96 -0.17 2.11 16 12 N -0.72 -12.35 2.86 -51.78 -0.15 -12.50 16 13 C 0.48 9.89 5.15 -83.59 -0.43 9.46 16 14 C -0.60 -12.82 8.19 -38.33 -0.31 -13.13 16 15 H 0.11 2.45 8.05 -52.49 -0.42 2.03 16 16 C 0.06 1.32 5.33 -17.21 -0.09 1.23 16 17 N -0.76 -16.99 13.54 55.59 0.75 -16.24 16 18 Si 1.05 17.90 30.06 -169.99 -5.11 12.79 16 19 H -0.27 -4.28 7.11 56.52 0.40 -3.88 16 20 H -0.27 -4.49 7.11 56.52 0.40 -4.09 16 21 H -0.27 -4.77 7.11 56.52 0.40 -4.37 16 22 C -0.36 -8.12 5.33 -104.94 -0.56 -8.68 16 23 C 0.32 7.13 11.93 -22.47 -0.27 6.87 16 24 N -0.54 -12.49 17.93 40.93 0.73 -11.76 16 25 C 0.33 7.99 14.87 -22.47 -0.33 7.65 16 26 N -0.54 -13.60 18.54 41.84 0.78 -12.82 16 27 C -0.11 -1.59 5.48 -26.35 -0.14 -1.73 16 28 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.03 0.29 6.88 -51.93 -0.36 -0.07 16 31 H 0.11 1.56 5.33 -51.93 -0.28 1.28 16 32 H 0.07 0.72 8.02 -51.93 -0.42 0.31 16 33 H 0.11 1.69 5.18 -51.93 -0.27 1.43 16 34 H 0.07 0.80 8.10 -51.93 -0.42 0.38 16 35 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 36 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 37 H 0.42 6.73 1.91 -66.69 -0.13 6.60 16 38 H 0.30 7.05 8.07 -40.82 -0.33 6.72 16 39 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 40 H 0.08 1.10 8.14 -51.93 -0.42 0.67 16 LS Contribution 320.69 15.07 4.83 4.83 Total: -1.00 -25.03 320.69 -6.95 -31.98 By element: Atomic # 1 Polarization: 17.86 SS G_CDS: -4.97 Total: 12.89 kcal Atomic # 6 Polarization: 0.78 SS G_CDS: -2.65 Total: -1.87 kcal Atomic # 7 Polarization: -61.58 SS G_CDS: 0.94 Total: -60.63 kcal Atomic # 14 Polarization: 17.90 SS G_CDS: -5.11 Total: 12.79 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -25.03 -6.95 -31.98 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169101099.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 189.688 kcal (2) G-P(sol) polarization free energy of solvation -25.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 164.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.984 kcal (6) G-S(sol) free energy of system = (1) + (5) 157.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds