Wall clock time and date at job start Tue Mar 31 2020 05:58:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.48717 * 111.00152 * 2 1 4 4 H 1.08993 * 112.23532 * 44.15454 * 3 2 1 5 5 C 1.54612 * 104.22010 * 282.48757 * 3 2 1 6 6 C 1.54284 * 104.84478 * 334.81898 * 5 3 2 7 7 C 1.48716 * 110.99876 * 245.52995 * 2 1 3 8 8 H 1.09003 * 112.74852 * 315.55612 * 7 2 1 9 9 C 1.53718 * 107.23889 * 191.65885 * 7 2 1 10 10 C 1.53132 * 108.88481 * 295.90933 * 9 7 2 11 11 H 1.09000 * 109.43274 * 174.04057 * 10 9 7 12 12 N 1.46499 * 109.43095 * 293.93811 * 10 9 7 13 13 C 1.38233 * 120.00006 * 234.04899 * 12 10 9 14 14 C 1.38990 * 119.99983 * 170.88717 * 13 12 10 15 15 H 1.07998 * 119.99699 * 116.26878 * 14 13 12 16 16 C 1.40814 * 119.99664 * 296.26207 * 14 13 12 17 17 N 1.30345 * 120.00452 * 323.31731 * 16 14 13 18 18 Si 1.86803 * 119.99769 * 143.31759 * 16 14 13 19 19 H 1.48500 * 109.47089 * 269.99878 * 18 16 14 20 20 H 1.48501 * 109.47228 * 30.00153 * 18 16 14 21 21 H 1.48502 * 109.46742 * 149.99910 * 18 16 14 22 22 C 1.41157 * 119.99935 * 350.88116 * 13 12 10 23 23 C 1.43198 * 119.99861 * 42.96071 * 22 13 12 24 24 N 5.73201 * 171.90160 * 243.56829 * 2 1 3 25 25 C 1.43195 * 120.00332 * 222.95928 * 22 13 12 26 26 N 7.84678 * 146.89939 * 333.25241 * 2 1 3 27 27 C 1.53139 * 109.68654 * 53.98851 * 10 9 7 28 28 H 1.08997 * 109.47393 * 174.46658 * 1 2 3 29 29 H 1.09001 * 109.47259 * 294.47270 * 1 2 3 30 30 H 1.09006 * 109.47025 * 54.46788 * 1 2 3 31 31 H 1.08997 * 110.36508 * 215.97702 * 5 3 2 32 32 H 1.09004 * 110.45678 * 93.71162 * 5 3 2 33 33 H 1.08994 * 110.36837 * 241.16123 * 6 5 3 34 34 H 1.09001 * 110.36339 * 118.83934 * 6 5 3 35 35 H 1.08998 * 109.56712 * 176.08916 * 9 7 2 36 36 H 1.08992 * 109.56704 * 55.72907 * 9 7 2 37 37 H 0.96997 * 120.00278 * 54.04410 * 12 10 9 38 38 H 0.96995 * 119.99384 * 0.71504 * 17 16 14 39 39 H 1.09004 * 109.57113 * 65.83577 * 27 10 9 40 40 H 1.09005 * 109.57054 * 186.18446 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0019 1.3884 0.0000 4 1 1.4740 2.0328 0.7028 5 6 1.8355 1.8591 -1.4633 6 6 1.8355 0.5617 -2.2983 7 6 2.0019 -0.5751 -1.2637 8 1 1.4829 -1.4853 -1.5644 9 6 3.5075 -0.8079 -1.0589 10 6 4.1937 0.5445 -0.8463 11 1 5.2421 0.3836 -0.5953 12 7 4.1028 1.3358 -2.0758 13 6 5.2480 1.8558 -2.6494 14 6 5.1902 2.4416 -3.9084 15 1 5.4131 3.4918 -4.0260 16 6 4.8413 1.6658 -5.0306 17 7 5.2438 0.4292 -5.1187 18 14 3.8014 2.4089 -6.3929 19 1 2.3638 2.1808 -6.0988 20 1 4.0642 3.8681 -6.4764 21 1 4.1497 1.7684 -7.6867 22 6 6.4760 1.7918 -1.9563 23 6 6.8484 0.5923 -1.2686 24 7 7.1438 -0.3594 -0.7231 25 6 7.3494 2.9265 -1.9408 26 7 8.0423 3.8267 -1.9286 27 6 3.5063 1.2978 0.2962 28 1 -0.3634 -1.0228 -0.0991 29 1 -0.3634 0.4257 0.9353 30 1 -0.3633 0.5973 -0.8364 31 1 2.6701 2.4971 -1.7538 32 1 0.8918 2.3903 -1.5876 33 1 2.6702 0.5618 -2.9993 34 1 0.8911 0.4539 -2.8317 35 1 3.9248 -1.2944 -1.9405 36 1 3.6637 -1.4381 -0.1835 37 1 3.2390 1.4948 -2.4875 38 1 5.7750 0.0402 -4.4065 39 1 3.6625 0.7623 1.2327 40 1 3.9230 2.3020 0.3742 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001169101099.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:19 Heat of formation + Delta-G solvation = 144.231292 kcal Electronic energy + Delta-G solvation = -23816.668748 eV Core-core repulsion = 20634.401496 eV Total energy + Delta-G solvation = -3182.267252 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 286.149 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.93836 -38.94342 -36.89843 -36.68621 -35.50875 -33.35985 -32.65610 -32.36338 -30.42177 -28.31405 -26.41744 -25.20651 -23.61164 -22.58276 -21.56197 -21.32376 -20.19680 -19.50666 -17.90078 -17.30052 -16.33981 -15.85414 -15.44626 -15.31090 -15.19035 -15.13580 -14.92937 -14.63286 -14.33242 -14.05232 -13.92339 -13.62519 -13.53376 -13.37031 -13.17331 -12.90514 -12.89503 -12.79777 -12.74564 -12.49456 -12.43819 -12.21640 -11.97713 -11.73484 -11.63523 -11.36276 -10.95470 -10.71174 -10.40131 -9.48174 -9.39178 -8.20659 -6.83452 0.64895 1.57030 1.59863 1.86556 2.00319 2.15603 2.32039 2.34312 2.58536 2.79663 2.94114 3.20071 3.55797 3.58002 3.78895 3.83035 4.03649 4.09916 4.13118 4.25220 4.29130 4.41127 4.53210 4.61342 4.71516 4.74755 4.79283 4.87422 4.98246 5.00471 5.03290 5.10369 5.11980 5.16871 5.22633 5.34212 5.47635 5.78562 5.84438 6.07271 6.15996 6.38299 6.62187 6.88202 7.12751 7.34002 7.90594 Molecular weight = 286.15amu Principal moments of inertia in cm(-1) A = 0.013307 B = 0.008385 C = 0.006194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2103.695545 B = 3338.415732 C = 4519.108369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 N -0.511 5.511 3 C 0.073 3.927 4 H 0.115 0.885 5 C -0.181 4.181 6 C -0.188 4.188 7 C 0.073 3.927 8 H 0.106 0.894 9 C -0.113 4.113 10 C 0.097 3.903 11 H 0.094 0.906 12 N -0.695 5.695 13 C 0.484 3.516 14 C -0.614 4.614 15 H 0.100 0.900 16 C 0.042 3.958 17 N -0.780 5.780 18 Si 1.098 2.902 19 H -0.245 1.245 20 H -0.264 1.264 21 H -0.280 1.280 22 C -0.376 4.376 23 C 0.321 3.679 24 N -0.556 5.556 25 C 0.332 3.668 26 N -0.569 5.569 27 C -0.110 4.110 28 H 0.072 0.928 29 H 0.078 0.922 30 H 0.036 0.964 31 H 0.092 0.908 32 H 0.091 0.909 33 H 0.083 0.917 34 H 0.089 0.911 35 H 0.049 0.951 36 H 0.078 0.922 37 H 0.433 0.567 38 H 0.284 0.716 39 H 0.079 0.921 40 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.932 -0.829 2.896 18.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 N -0.234 5.234 3 C -0.036 4.036 4 H 0.133 0.867 5 C -0.220 4.220 6 C -0.228 4.228 7 C -0.036 4.036 8 H 0.124 0.876 9 C -0.152 4.152 10 C -0.008 4.008 11 H 0.111 0.889 12 N -0.335 5.335 13 C 0.357 3.643 14 C -0.647 4.647 15 H 0.117 0.883 16 C -0.180 4.180 17 N -0.401 5.401 18 Si 0.915 3.085 19 H -0.169 1.169 20 H -0.188 1.188 21 H -0.205 1.205 22 C -0.398 4.398 23 C 0.019 3.981 24 N -0.242 5.242 25 C 0.027 3.973 26 N -0.253 5.253 27 C -0.148 4.148 28 H 0.091 0.909 29 H 0.096 0.904 30 H 0.055 0.945 31 H 0.110 0.890 32 H 0.109 0.891 33 H 0.101 0.899 34 H 0.107 0.893 35 H 0.068 0.932 36 H 0.096 0.904 37 H 0.297 0.703 38 H 0.096 0.904 39 H 0.098 0.902 40 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -17.017 -1.749 2.999 17.367 hybrid contribution 0.636 0.578 0.347 0.927 sum -16.381 -1.171 3.346 16.760 Atomic orbital electron populations 1.22535 0.86825 1.02470 1.01816 1.65405 1.09263 1.15341 1.33358 1.23018 0.94896 0.89920 0.95740 0.86749 1.23568 1.04151 0.97809 0.96485 1.23598 1.03419 0.95951 0.99818 1.22972 0.94593 0.97648 0.88353 0.87586 1.21962 0.95202 0.96361 1.01695 1.21836 1.02319 0.91024 0.85655 0.88891 1.49298 1.08538 1.51993 1.23642 1.17729 0.83754 0.75038 0.87773 1.20073 1.52221 1.01080 0.91343 0.88281 1.28048 0.94428 0.93118 1.02455 1.70483 1.21728 1.15912 1.31940 0.83266 0.76341 0.76420 0.72495 1.16862 1.18815 1.20513 1.12977 1.00757 0.90393 1.35689 1.24745 0.91146 0.92146 0.90107 1.81148 1.11038 1.13472 1.18517 1.24902 0.90712 0.91755 0.89938 1.81008 1.12593 1.13624 1.18086 1.21938 0.94738 1.00648 0.97488 0.90876 0.90355 0.94494 0.88987 0.89071 0.89905 0.89258 0.93213 0.90374 0.70324 0.90435 0.90211 0.91114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.18 9.45 127.69 1.21 1.39 16 2 N -0.51 -10.80 5.29 -853.65 -4.51 -15.31 16 3 C 0.07 1.57 3.68 45.31 0.17 1.74 16 4 H 0.11 2.03 8.10 -2.39 -0.02 2.01 16 5 C -0.18 -3.95 5.07 31.58 0.16 -3.79 16 6 C -0.19 -4.41 5.10 31.58 0.16 -4.25 16 7 C 0.07 1.72 3.67 45.35 0.17 1.89 16 8 H 0.11 2.23 8.11 -2.39 -0.02 2.21 16 9 C -0.11 -3.38 5.49 30.88 0.17 -3.21 16 10 C 0.10 3.18 2.84 45.08 0.13 3.31 16 11 H 0.09 3.62 2.95 -9.00 -0.03 3.59 16 12 N -0.69 -23.78 2.86 -317.73 -0.91 -24.69 16 13 C 0.48 20.20 5.15 39.03 0.20 20.40 16 14 C -0.61 -26.44 8.19 23.08 0.19 -26.25 16 15 H 0.10 4.47 8.05 -2.91 -0.02 4.44 16 16 C 0.04 1.75 5.33 85.54 0.46 2.20 16 17 N -0.78 -35.09 13.54 21.97 0.30 -34.79 16 18 Si 1.10 34.66 30.06 68.60 2.06 36.72 16 19 H -0.24 -6.66 7.11 99.48 0.71 -5.95 16 20 H -0.26 -8.06 7.11 99.48 0.71 -7.36 16 21 H -0.28 -9.17 7.11 99.48 0.71 -8.47 16 22 C -0.38 -17.23 5.33 -20.07 -0.11 -17.34 16 23 C 0.32 14.88 11.93 88.33 1.05 15.94 16 24 N -0.56 -26.21 17.93 16.13 0.29 -25.92 16 25 C 0.33 16.35 14.87 88.33 1.31 17.66 16 26 N -0.57 -28.95 18.54 19.00 0.35 -28.60 16 27 C -0.11 -2.97 5.48 30.84 0.17 -2.80 16 28 H 0.07 1.05 8.14 -2.39 -0.02 1.04 16 29 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 30 H 0.04 0.54 6.88 -2.38 -0.02 0.53 16 31 H 0.09 2.41 5.33 -2.39 -0.01 2.39 16 32 H 0.09 1.59 8.02 -2.39 -0.02 1.57 16 33 H 0.08 2.44 5.18 -2.39 -0.01 2.43 16 34 H 0.09 1.75 8.10 -2.39 -0.02 1.73 16 35 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 36 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 37 H 0.43 13.29 1.91 -117.01 -0.22 13.07 16 38 H 0.28 13.70 8.07 -92.71 -0.75 12.95 16 39 H 0.08 2.14 8.14 -2.38 -0.02 2.12 16 40 H 0.07 1.99 8.14 -2.38 -0.02 1.97 16 Total: -1.00 -54.32 320.69 3.88 -50.45 By element: Atomic # 1 Polarization: 34.41 SS G_CDS: 0.86 Total: 35.27 kcal Atomic # 6 Polarization: 1.44 SS G_CDS: 5.44 Total: 6.88 kcal Atomic # 7 Polarization: -124.83 SS G_CDS: -4.48 Total: -129.32 kcal Atomic # 14 Polarization: 34.66 SS G_CDS: 2.06 Total: 36.72 kcal Total: -54.32 3.88 -50.45 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169101099.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 194.678 kcal (2) G-P(sol) polarization free energy of solvation -54.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 140.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.446 kcal (6) G-S(sol) free energy of system = (1) + (5) 144.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds