Wall clock time and date at job start Tue Mar 31 2020 05:58:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.48718 * 110.99582 * 2 1 4 4 H 1.09001 * 112.23948 * 44.16279 * 3 2 1 5 5 C 1.54603 * 104.22506 * 282.48439 * 3 2 1 6 6 C 1.54290 * 104.84141 * 334.82685 * 5 3 2 7 7 C 1.48711 * 111.00037 * 245.53192 * 2 1 3 8 8 H 1.09000 * 112.74883 * 315.55658 * 7 2 1 9 9 C 1.53708 * 107.23918 * 191.65682 * 7 2 1 10 10 C 1.53140 * 108.88521 * 295.91258 * 9 7 2 11 11 H 1.09000 * 109.42575 * 293.98244 * 10 9 7 12 12 N 1.46509 * 109.42554 * 174.09462 * 10 9 7 13 13 C 1.38223 * 120.00070 * 155.47750 * 12 10 9 14 14 C 1.39001 * 120.00012 * 5.27950 * 13 12 10 15 15 H 1.07995 * 119.99834 * 315.43871 * 14 13 12 16 16 C 1.40814 * 119.99801 * 135.43369 * 14 13 12 17 17 N 1.30346 * 119.99851 * 155.53368 * 16 14 13 18 18 Si 1.86794 * 120.00273 * 335.53200 * 16 14 13 19 19 H 1.48501 * 109.47213 * 95.35673 * 18 16 14 20 20 H 1.48506 * 109.47263 * 215.35428 * 18 16 14 21 21 H 1.48497 * 109.47275 * 335.35561 * 18 16 14 22 22 C 1.41143 * 120.00337 * 185.27997 * 13 12 10 23 23 C 1.43204 * 120.00524 * 172.74153 * 22 13 12 24 24 N 8.74639 * 159.39725 * 335.65419 * 2 1 3 25 25 C 1.43201 * 119.99995 * 352.74330 * 22 13 12 26 26 N 7.29168 * 170.07587 * 152.35514 * 2 1 3 27 27 C 1.53133 * 109.73404 * 54.01517 * 10 9 7 28 28 H 1.08999 * 109.47229 * 174.46967 * 1 2 3 29 29 H 1.09002 * 109.47392 * 294.47103 * 1 2 3 30 30 H 1.09002 * 109.47122 * 54.46937 * 1 2 3 31 31 H 1.08994 * 110.36883 * 215.98243 * 5 3 2 32 32 H 1.08998 * 110.36417 * 93.66133 * 5 3 2 33 33 H 1.09000 * 110.36126 * 241.15607 * 6 5 3 34 34 H 1.08994 * 110.46038 * 118.88969 * 6 5 3 35 35 H 1.08996 * 109.57162 * 176.08854 * 9 7 2 36 36 H 1.09001 * 109.66912 * 55.79213 * 9 7 2 37 37 H 0.96997 * 119.99916 * 335.19666 * 12 10 9 38 38 H 0.97000 * 119.99831 * 180.02562 * 17 16 14 39 39 H 1.09000 * 109.56847 * 65.80366 * 27 10 9 40 40 H 1.08990 * 109.56926 * 186.16386 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0019 1.3884 0.0000 4 1 1.4740 2.0329 0.7029 5 6 1.8356 1.8592 -1.4632 6 6 1.8356 0.5618 -2.2982 7 6 2.0020 -0.5750 -1.2636 8 1 1.4830 -1.4852 -1.5644 9 6 3.5075 -0.8077 -1.0589 10 6 4.1936 0.5447 -0.8461 11 1 4.1253 1.1338 -1.7607 12 7 5.6032 0.3284 -0.5101 13 6 6.5336 1.3192 -0.7617 14 6 6.1180 2.5600 -1.2307 15 1 5.3837 2.6204 -2.0203 16 6 6.6543 3.7380 -0.6761 17 7 6.6640 4.8401 -1.3719 18 14 7.3517 3.7212 1.0567 19 1 8.8207 3.5117 0.9971 20 1 7.0633 5.0187 1.7190 21 1 6.7257 2.6199 1.8316 22 6 7.9056 1.0712 -0.5424 23 6 8.8817 2.0375 -0.9475 24 7 9.6560 2.8040 -1.2688 25 6 8.3216 -0.1469 0.0852 26 7 8.6516 -1.1132 0.5831 27 6 3.5075 1.2985 0.2966 28 1 -0.3633 -1.0229 -0.0990 29 1 -0.3634 0.4257 0.9353 30 1 -0.3633 0.5972 -0.8363 31 1 2.6701 2.4972 -1.7536 32 1 0.8911 2.3893 -1.5861 33 1 2.6702 0.5619 -2.9992 34 1 0.8921 0.4529 -2.8330 35 1 3.9249 -1.2942 -1.9404 36 1 3.6656 -1.4389 -0.1844 37 1 5.8828 -0.5085 -0.1073 38 1 7.0338 5.6515 -0.9900 39 1 3.6637 0.7629 1.2330 40 1 3.9249 2.3023 0.3743 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001169101100.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:22 Heat of formation + Delta-G solvation = 68.673268 kcal Electronic energy + Delta-G solvation = -23103.477324 eV Core-core repulsion = 19917.933629 eV Total energy + Delta-G solvation = -3185.543694 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 286.149 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.82108 -37.47733 -35.29804 -34.83319 -33.71093 -32.43519 -31.22233 -30.87667 -28.80006 -26.90934 -25.69842 -24.07988 -22.28952 -20.87298 -20.33860 -18.86082 -18.49491 -17.54469 -16.47324 -16.09310 -15.66738 -15.18621 -14.31321 -14.27353 -13.51050 -13.39686 -13.05103 -12.97756 -12.90720 -12.68342 -12.60375 -12.40432 -12.17658 -11.97492 -11.90098 -11.73640 -11.58200 -11.40264 -11.07765 -10.98190 -10.86621 -10.73712 -10.63649 -10.50233 -10.28889 -10.13774 -10.01239 -9.54122 -9.14186 -8.53316 -7.31683 -6.69431 -5.25578 2.54453 3.07457 3.15121 3.25524 3.80889 3.87167 3.89249 3.99184 4.08239 4.35085 4.51798 4.67859 4.77841 4.86969 5.13509 5.19204 5.27136 5.32382 5.35731 5.40679 5.41779 5.52976 5.59674 5.69020 5.78420 5.83801 5.89021 5.94777 6.06944 6.15811 6.25963 6.30386 6.31573 6.48918 6.61171 6.70277 6.88875 7.07688 7.16155 7.33967 7.81580 8.01595 8.41148 8.55783 8.90572 9.23090 9.65502 Molecular weight = 286.15amu Principal moments of inertia in cm(-1) A = 0.019376 B = 0.006088 C = 0.005293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1444.756878 B = 4597.897354 C = 5289.119388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 N -0.508 5.508 3 C 0.066 3.934 4 H 0.091 0.909 5 C -0.153 4.153 6 C -0.152 4.152 7 C 0.068 3.932 8 H 0.091 0.909 9 C -0.119 4.119 10 C 0.158 3.842 11 H 0.089 0.911 12 N -0.730 5.730 13 C 0.410 3.590 14 C -0.460 4.460 15 H 0.110 0.890 16 C 0.112 3.888 17 N -0.754 5.754 18 Si 0.889 3.111 19 H -0.246 1.246 20 H -0.282 1.282 21 H -0.244 1.244 22 C -0.323 4.323 23 C 0.321 3.679 24 N -0.517 5.517 25 C 0.305 3.695 26 N -0.533 5.533 27 C -0.120 4.120 28 H 0.063 0.937 29 H 0.065 0.935 30 H 0.028 0.972 31 H 0.086 0.914 32 H 0.059 0.941 33 H 0.077 0.923 34 H 0.060 0.940 35 H 0.069 0.931 36 H 0.073 0.927 37 H 0.388 0.612 38 H 0.295 0.705 39 H 0.069 0.931 40 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.148 -3.921 0.419 16.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 N -0.231 5.231 3 C -0.043 4.043 4 H 0.109 0.891 5 C -0.192 4.192 6 C -0.191 4.191 7 C -0.041 4.041 8 H 0.109 0.891 9 C -0.157 4.157 10 C 0.053 3.947 11 H 0.106 0.894 12 N -0.355 5.355 13 C 0.295 3.705 14 C -0.492 4.492 15 H 0.128 0.872 16 C -0.117 4.117 17 N -0.374 5.374 18 Si 0.712 3.288 19 H -0.170 1.170 20 H -0.208 1.208 21 H -0.167 1.167 22 C -0.343 4.343 23 C 0.012 3.988 24 N -0.199 5.199 25 C -0.001 4.001 26 N -0.216 5.216 27 C -0.159 4.159 28 H 0.082 0.918 29 H 0.084 0.916 30 H 0.047 0.953 31 H 0.104 0.896 32 H 0.078 0.922 33 H 0.096 0.904 34 H 0.078 0.922 35 H 0.088 0.912 36 H 0.092 0.908 37 H 0.222 0.778 38 H 0.107 0.893 39 H 0.087 0.913 40 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -14.445 -4.240 1.036 15.090 hybrid contribution -0.409 0.466 -0.105 0.628 sum -14.854 -3.775 0.931 15.354 Atomic orbital electron populations 1.22441 0.88855 1.01412 1.00845 1.65479 1.07436 1.16177 1.33975 1.23064 0.96505 0.88924 0.95789 0.89128 1.22973 1.02482 0.97880 0.95903 1.22966 1.02041 0.95198 0.98897 1.22967 0.95567 0.97228 0.88381 0.89058 1.22011 0.93607 0.97672 1.02417 1.20934 0.80325 0.95204 0.98236 0.89362 1.45147 1.05620 1.18836 1.65850 1.17088 0.84836 0.86292 0.82248 1.18888 1.23226 0.87863 1.19190 0.87239 1.26070 0.90994 0.94440 1.00230 1.69440 1.28654 1.02206 1.37076 0.86571 0.82633 0.78846 0.80777 1.16969 1.20828 1.16658 1.12691 0.88027 0.94427 1.39174 1.24377 0.91778 0.91668 0.90994 1.81034 1.10701 1.11515 1.16627 1.25333 0.92592 0.91810 0.90411 1.81084 1.07965 1.14100 1.18443 1.22128 0.92116 1.02390 0.99260 0.91805 0.91623 0.95288 0.89582 0.92233 0.90424 0.92157 0.91203 0.90807 0.77783 0.89325 0.91270 0.89800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.12 9.45 60.07 0.57 0.69 16 2 N -0.51 -5.71 5.29 -221.10 -1.17 -6.87 16 3 C 0.07 0.78 3.68 -65.49 -0.24 0.54 16 4 H 0.09 1.01 8.10 -51.93 -0.42 0.59 16 5 C -0.15 -1.73 5.29 -25.21 -0.13 -1.86 16 6 C -0.15 -1.58 5.33 -25.21 -0.13 -1.72 16 7 C 0.07 0.72 3.67 -65.50 -0.24 0.48 16 8 H 0.09 0.86 8.11 -51.93 -0.42 0.44 16 9 C -0.12 -1.43 5.09 -26.29 -0.13 -1.56 16 10 C 0.16 2.26 1.92 -67.78 -0.13 2.13 16 11 H 0.09 1.33 4.03 -51.93 -0.21 1.12 16 12 N -0.73 -12.46 5.13 -51.78 -0.27 -12.73 16 13 C 0.41 8.39 5.49 -83.60 -0.46 7.93 16 14 C -0.46 -9.88 7.37 -38.33 -0.28 -10.16 16 15 H 0.11 2.36 6.94 -52.49 -0.36 1.99 16 16 C 0.11 2.55 4.42 -17.21 -0.08 2.47 16 17 N -0.75 -17.67 13.90 55.59 0.77 -16.90 16 18 Si 0.89 19.28 24.93 -169.99 -4.24 15.04 16 19 H -0.25 -5.82 5.99 56.52 0.34 -5.48 16 20 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 21 H -0.24 -5.14 7.11 56.52 0.40 -4.74 16 22 C -0.32 -7.26 4.49 -104.94 -0.47 -7.73 16 23 C 0.32 7.92 10.43 -22.47 -0.23 7.68 16 24 N -0.52 -13.42 18.02 41.84 0.75 -12.67 16 25 C 0.31 6.83 14.10 -22.47 -0.32 6.51 16 26 N -0.53 -12.17 18.54 41.84 0.78 -11.40 16 27 C -0.12 -1.68 5.12 -26.29 -0.13 -1.82 16 28 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.03 0.26 6.88 -51.93 -0.36 -0.10 16 31 H 0.09 1.10 7.03 -51.93 -0.37 0.74 16 32 H 0.06 0.61 8.01 -51.93 -0.42 0.20 16 33 H 0.08 0.85 7.03 -51.93 -0.37 0.48 16 34 H 0.06 0.56 8.10 -51.93 -0.42 0.14 16 35 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 37 H 0.39 6.52 7.45 -40.82 -0.30 6.22 16 38 H 0.30 6.50 8.29 -40.82 -0.34 6.16 16 39 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 40 H 0.08 1.31 7.48 -51.93 -0.39 0.93 16 LS Contribution 320.04 15.07 4.82 4.82 Total: -1.00 -25.85 320.04 -6.31 -32.16 By element: Atomic # 1 Polarization: 10.29 SS G_CDS: -5.34 Total: 4.95 kcal Atomic # 6 Polarization: 6.01 SS G_CDS: -2.42 Total: 3.59 kcal Atomic # 7 Polarization: -61.43 SS G_CDS: 0.87 Total: -60.56 kcal Atomic # 14 Polarization: 19.28 SS G_CDS: -4.24 Total: 15.04 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -25.85 -6.31 -32.16 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169101100.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.835 kcal (2) G-P(sol) polarization free energy of solvation -25.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.161 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds