Wall clock time and date at job start Tue Mar 31 2020 05:58:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.48718 * 110.99582 * 2 1 4 4 H 1.09001 * 112.23948 * 44.16279 * 3 2 1 5 5 C 1.54603 * 104.22506 * 282.48439 * 3 2 1 6 6 C 1.54290 * 104.84141 * 334.82685 * 5 3 2 7 7 C 1.48711 * 111.00037 * 245.53192 * 2 1 3 8 8 H 1.09000 * 112.74883 * 315.55658 * 7 2 1 9 9 C 1.53708 * 107.23918 * 191.65682 * 7 2 1 10 10 C 1.53140 * 108.88521 * 295.91258 * 9 7 2 11 11 H 1.09000 * 109.42575 * 293.98244 * 10 9 7 12 12 N 1.46509 * 109.42554 * 174.09462 * 10 9 7 13 13 C 1.38223 * 120.00070 * 155.47750 * 12 10 9 14 14 C 1.39001 * 120.00012 * 5.27950 * 13 12 10 15 15 H 1.07995 * 119.99834 * 315.43871 * 14 13 12 16 16 C 1.40814 * 119.99801 * 135.43369 * 14 13 12 17 17 N 1.30346 * 119.99851 * 155.53368 * 16 14 13 18 18 Si 1.86794 * 120.00273 * 335.53200 * 16 14 13 19 19 H 1.48501 * 109.47213 * 95.35673 * 18 16 14 20 20 H 1.48506 * 109.47263 * 215.35428 * 18 16 14 21 21 H 1.48497 * 109.47275 * 335.35561 * 18 16 14 22 22 C 1.41143 * 120.00337 * 185.27997 * 13 12 10 23 23 C 1.43204 * 120.00524 * 172.74153 * 22 13 12 24 24 N 8.74639 * 159.39725 * 335.65419 * 2 1 3 25 25 C 1.43201 * 119.99995 * 352.74330 * 22 13 12 26 26 N 7.29168 * 170.07587 * 152.35514 * 2 1 3 27 27 C 1.53133 * 109.73404 * 54.01517 * 10 9 7 28 28 H 1.08999 * 109.47229 * 174.46967 * 1 2 3 29 29 H 1.09002 * 109.47392 * 294.47103 * 1 2 3 30 30 H 1.09002 * 109.47122 * 54.46937 * 1 2 3 31 31 H 1.08994 * 110.36883 * 215.98243 * 5 3 2 32 32 H 1.08998 * 110.36417 * 93.66133 * 5 3 2 33 33 H 1.09000 * 110.36126 * 241.15607 * 6 5 3 34 34 H 1.08994 * 110.46038 * 118.88969 * 6 5 3 35 35 H 1.08996 * 109.57162 * 176.08854 * 9 7 2 36 36 H 1.09001 * 109.66912 * 55.79213 * 9 7 2 37 37 H 0.96997 * 119.99916 * 335.19666 * 12 10 9 38 38 H 0.97000 * 119.99831 * 180.02562 * 17 16 14 39 39 H 1.09000 * 109.56847 * 65.80366 * 27 10 9 40 40 H 1.08990 * 109.56926 * 186.16386 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0019 1.3884 0.0000 4 1 1.4740 2.0329 0.7029 5 6 1.8356 1.8592 -1.4632 6 6 1.8356 0.5618 -2.2982 7 6 2.0020 -0.5750 -1.2636 8 1 1.4830 -1.4852 -1.5644 9 6 3.5075 -0.8077 -1.0589 10 6 4.1936 0.5447 -0.8461 11 1 4.1253 1.1338 -1.7607 12 7 5.6032 0.3284 -0.5101 13 6 6.5336 1.3192 -0.7617 14 6 6.1180 2.5600 -1.2307 15 1 5.3837 2.6204 -2.0203 16 6 6.6543 3.7380 -0.6761 17 7 6.6640 4.8401 -1.3719 18 14 7.3517 3.7212 1.0567 19 1 8.8207 3.5117 0.9971 20 1 7.0633 5.0187 1.7190 21 1 6.7257 2.6199 1.8316 22 6 7.9056 1.0712 -0.5424 23 6 8.8817 2.0375 -0.9475 24 7 9.6560 2.8040 -1.2688 25 6 8.3216 -0.1469 0.0852 26 7 8.6516 -1.1132 0.5831 27 6 3.5075 1.2985 0.2966 28 1 -0.3633 -1.0229 -0.0990 29 1 -0.3634 0.4257 0.9353 30 1 -0.3633 0.5972 -0.8363 31 1 2.6701 2.4972 -1.7536 32 1 0.8911 2.3893 -1.5861 33 1 2.6702 0.5619 -2.9992 34 1 0.8921 0.4529 -2.8330 35 1 3.9249 -1.2942 -1.9404 36 1 3.6656 -1.4389 -0.1844 37 1 5.8828 -0.5085 -0.1073 38 1 7.0338 5.6515 -0.9900 39 1 3.6637 0.7629 1.2330 40 1 3.9249 2.3023 0.3743 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001169101100.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:21 Heat of formation + Delta-G solvation = 52.298243 kcal Electronic energy + Delta-G solvation = -23104.187398 eV Core-core repulsion = 19917.933629 eV Total energy + Delta-G solvation = -3186.253768 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 286.149 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.78793 -39.07746 -36.96602 -36.69838 -35.40132 -33.75724 -32.17863 -31.94333 -30.14341 -28.66994 -26.61360 -25.06556 -23.46246 -22.43473 -21.23477 -20.37995 -19.93342 -19.06238 -17.77553 -17.42350 -16.94688 -16.64821 -15.27996 -15.21786 -14.95524 -14.90923 -14.64814 -14.53467 -14.19448 -14.02268 -13.80673 -13.69653 -13.54366 -13.44417 -13.37428 -13.21755 -12.90748 -12.78603 -12.62237 -12.47189 -12.30396 -12.05040 -11.91133 -11.74062 -11.64568 -11.24530 -11.16119 -11.06279 -10.70521 -9.36472 -9.09328 -8.36163 -7.02650 0.80511 1.33515 1.37661 1.50483 1.96727 2.11316 2.20172 2.31172 2.56779 2.82087 3.08929 3.33716 3.76193 3.80612 3.87101 4.01160 4.24286 4.28491 4.35503 4.47562 4.48257 4.50927 4.55742 4.66583 4.70036 4.87896 4.93529 4.99335 5.10475 5.12621 5.15867 5.19859 5.25714 5.34429 5.41874 5.46435 5.55961 5.72691 5.99775 6.11783 6.26961 6.31410 6.76331 6.99284 7.10725 7.32665 7.91297 Molecular weight = 286.15amu Principal moments of inertia in cm(-1) A = 0.019376 B = 0.006088 C = 0.005293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1444.756878 B = 4597.897354 C = 5289.119388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 N -0.519 5.519 3 C 0.070 3.930 4 H 0.098 0.902 5 C -0.151 4.151 6 C -0.149 4.149 7 C 0.072 3.928 8 H 0.112 0.888 9 C -0.114 4.114 10 C 0.156 3.844 11 H 0.083 0.917 12 N -0.717 5.717 13 C 0.424 3.576 14 C -0.463 4.463 15 H 0.109 0.891 16 C 0.100 3.900 17 N -0.778 5.778 18 Si 0.909 3.091 19 H -0.274 1.274 20 H -0.268 1.268 21 H -0.235 1.235 22 C -0.333 4.333 23 C 0.323 3.677 24 N -0.548 5.548 25 C 0.312 3.688 26 N -0.539 5.539 27 C -0.117 4.117 28 H 0.075 0.925 29 H 0.069 0.931 30 H 0.034 0.966 31 H 0.065 0.935 32 H 0.071 0.929 33 H 0.070 0.930 34 H 0.076 0.924 35 H 0.077 0.923 36 H 0.071 0.929 37 H 0.392 0.608 38 H 0.299 0.701 39 H 0.061 0.939 40 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.341 -5.135 0.516 19.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 N -0.242 5.242 3 C -0.039 4.039 4 H 0.116 0.884 5 C -0.191 4.191 6 C -0.188 4.188 7 C -0.037 4.037 8 H 0.130 0.870 9 C -0.152 4.152 10 C 0.052 3.948 11 H 0.101 0.899 12 N -0.340 5.340 13 C 0.306 3.694 14 C -0.495 4.495 15 H 0.126 0.874 16 C -0.128 4.128 17 N -0.399 5.399 18 Si 0.731 3.269 19 H -0.199 1.199 20 H -0.193 1.193 21 H -0.158 1.158 22 C -0.354 4.354 23 C 0.015 3.985 24 N -0.231 5.231 25 C 0.006 3.994 26 N -0.222 5.222 27 C -0.156 4.156 28 H 0.094 0.906 29 H 0.088 0.912 30 H 0.053 0.947 31 H 0.084 0.916 32 H 0.090 0.910 33 H 0.089 0.911 34 H 0.095 0.905 35 H 0.096 0.904 36 H 0.090 0.910 37 H 0.227 0.773 38 H 0.111 0.889 39 H 0.080 0.920 40 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -16.686 -5.476 1.147 17.599 hybrid contribution 0.230 0.792 -0.128 0.834 sum -16.456 -4.684 1.019 17.140 Atomic orbital electron populations 1.22484 0.87278 1.02366 1.01331 1.65436 1.08934 1.15419 1.34362 1.22980 0.94812 0.89824 0.96299 0.88397 1.22930 1.02260 0.98194 0.95670 1.22943 1.02660 0.94509 0.98650 1.22998 0.94435 0.98061 0.88219 0.87033 1.21979 0.94701 0.95859 1.02671 1.21132 0.78709 0.96881 0.98084 0.89934 1.45246 1.06414 1.18056 1.64291 1.16961 0.84609 0.86747 0.81103 1.18881 1.23192 0.87977 1.19468 0.87356 1.26334 0.90873 0.94614 1.01005 1.69452 1.29958 1.02756 1.37747 0.86290 0.80508 0.79833 0.80268 1.19936 1.19321 1.15775 1.12797 0.88447 0.94246 1.39936 1.24746 0.91623 0.91565 0.90534 1.81016 1.11550 1.12467 1.18033 1.25224 0.92412 0.91601 0.90181 1.81089 1.08035 1.14315 1.18798 1.22038 0.93987 1.00906 0.98662 0.90622 0.91241 0.94732 0.91606 0.91026 0.91112 0.90520 0.90443 0.90999 0.77315 0.88911 0.92025 0.91832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.21 9.45 127.69 1.21 1.41 16 2 N -0.52 -10.21 5.29 -853.43 -4.51 -14.72 16 3 C 0.07 1.52 3.68 45.35 0.17 1.69 16 4 H 0.10 1.99 8.10 -2.39 -0.02 1.97 16 5 C -0.15 -3.13 5.29 31.58 0.17 -2.97 16 6 C -0.15 -2.71 5.33 31.58 0.17 -2.54 16 7 C 0.07 1.31 3.67 45.35 0.17 1.48 16 8 H 0.11 1.65 8.11 -2.39 -0.02 1.63 16 9 C -0.11 -2.47 5.09 30.88 0.16 -2.31 16 10 C 0.16 4.25 1.92 45.08 0.09 4.34 16 11 H 0.08 2.40 4.03 -2.39 -0.01 2.39 16 12 N -0.72 -23.62 5.13 -317.72 -1.63 -25.25 16 13 C 0.42 17.03 5.49 39.03 0.21 17.25 16 14 C -0.46 -19.75 7.37 23.08 0.17 -19.58 16 15 H 0.11 4.65 6.94 -2.91 -0.02 4.63 16 16 C 0.10 4.50 4.42 85.54 0.38 4.88 16 17 N -0.78 -36.56 13.90 21.97 0.31 -36.25 16 18 Si 0.91 38.96 24.93 68.60 1.71 40.67 16 19 H -0.27 -13.09 5.99 99.48 0.60 -12.50 16 20 H -0.27 -10.78 7.11 99.48 0.71 -10.08 16 21 H -0.24 -9.65 7.11 99.48 0.71 -8.94 16 22 C -0.33 -14.81 4.49 -20.07 -0.09 -14.90 16 23 C 0.32 15.97 10.43 88.33 0.92 16.89 16 24 N -0.55 -28.71 18.02 19.00 0.34 -28.36 16 25 C 0.31 13.67 14.10 88.33 1.25 14.91 16 26 N -0.54 -23.95 18.54 19.00 0.35 -23.60 16 27 C -0.12 -3.16 5.12 30.88 0.16 -3.00 16 28 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 29 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 30 H 0.03 0.49 6.88 -2.39 -0.02 0.47 16 31 H 0.07 1.64 7.03 -2.39 -0.02 1.62 16 32 H 0.07 1.31 8.01 -2.39 -0.02 1.29 16 33 H 0.07 1.40 7.03 -2.39 -0.02 1.39 16 34 H 0.08 1.17 8.10 -2.39 -0.02 1.15 16 35 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 36 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 37 H 0.39 12.55 7.45 -92.71 -0.69 11.86 16 38 H 0.30 13.24 8.29 -92.71 -0.77 12.47 16 39 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 40 H 0.06 1.97 7.48 -2.39 -0.02 1.95 16 Total: -1.00 -53.79 320.04 1.96 -51.83 By element: Atomic # 1 Polarization: 17.86 SS G_CDS: 0.28 Total: 18.14 kcal Atomic # 6 Polarization: 12.43 SS G_CDS: 5.12 Total: 17.55 kcal Atomic # 7 Polarization: -123.05 SS G_CDS: -5.14 Total: -128.19 kcal Atomic # 14 Polarization: 38.96 SS G_CDS: 1.71 Total: 40.67 kcal Total: -53.79 1.96 -51.83 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169101100.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.129 kcal (2) G-P(sol) polarization free energy of solvation -53.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.830 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds