Wall clock time and date at job start Tue Mar 31 2020 06:19:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86797 * 120.00159 * 2 1 4 4 H 1.48500 * 109.47189 * 240.00438 * 3 2 1 5 5 H 1.48504 * 109.47230 * 0.02562 * 3 2 1 6 6 H 1.48494 * 109.47420 * 120.00536 * 3 2 1 7 7 C 1.37874 * 119.99955 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00474 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00171 * 0.26966 * 7 2 1 10 10 C 1.53009 * 109.46812 * 299.72916 * 9 7 2 11 11 C 1.53001 * 109.46532 * 179.97438 * 10 9 7 12 12 C 1.53001 * 109.47495 * 59.99941 * 11 10 9 13 13 N 1.46898 * 109.47041 * 179.97438 * 12 11 10 14 14 C 1.46903 * 110.99866 * 273.20898 * 13 12 11 15 15 H 1.08996 * 110.28188 * 37.26022 * 14 13 12 16 16 C 1.54370 * 110.30939 * 275.15918 * 14 13 12 17 17 C 1.54347 * 102.38670 * 214.78953 * 16 14 13 18 18 C 1.51473 * 105.21489 * 26.34325 * 17 16 14 19 19 N 1.32292 * 130.14548 * 162.83210 * 18 17 16 20 20 C 1.32113 * 121.90424 * 179.75758 * 19 18 17 21 21 C 1.38224 * 120.86192 * 0.19457 * 20 19 18 22 22 C 1.38580 * 118.98647 * 359.87028 * 21 20 19 23 23 C 1.38344 * 109.61275 * 342.71861 * 18 17 16 24 24 C 1.52996 * 109.46875 * 299.99795 * 12 11 10 25 25 C 1.52992 * 109.47298 * 59.99791 * 24 12 11 26 26 H 0.96999 * 119.99790 * 359.97438 * 1 2 3 27 27 H 1.08998 * 109.46871 * 59.72346 * 9 7 2 28 28 H 1.08998 * 109.46937 * 299.99389 * 10 9 7 29 29 H 1.08994 * 109.47212 * 60.00066 * 10 9 7 30 30 H 1.08998 * 109.47099 * 299.99398 * 11 10 9 31 31 H 1.09008 * 109.46621 * 180.02562 * 11 10 9 32 32 H 1.09001 * 109.46531 * 59.99903 * 12 11 10 33 33 H 1.00904 * 110.99954 * 37.15693 * 13 12 11 34 34 H 1.09000 * 110.82532 * 333.01497 * 16 14 13 35 35 H 1.08998 * 110.82486 * 96.57256 * 16 14 13 36 36 H 1.09002 * 110.29066 * 145.27438 * 17 16 14 37 37 H 1.09000 * 110.29584 * 267.30326 * 17 16 14 38 38 H 1.08000 * 119.53547 * 180.02562 * 20 19 18 39 39 H 1.07996 * 120.50789 * 179.84304 * 21 20 19 40 40 H 1.07995 * 120.72037 * 179.97438 * 22 21 20 41 41 H 1.08999 * 109.46901 * 299.99543 * 24 12 11 42 42 H 1.09002 * 109.47077 * 180.02562 * 24 12 11 43 43 H 1.09008 * 109.47027 * 179.97438 * 25 24 12 44 44 H 1.08999 * 109.47348 * 60.00025 * 25 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1030 1.6963 1.2124 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0073 10 6 0.3714 -2.5866 1.2417 11 6 -0.3940 -3.9114 1.2344 12 6 0.5998 -5.0747 1.2281 13 7 -0.1352 -6.3465 1.2217 14 6 -0.4645 -6.7710 2.5890 15 1 -0.7183 -5.9064 3.2022 16 6 0.7204 -7.5402 3.2113 17 6 0.0084 -8.5964 4.0829 18 6 -1.3408 -8.8084 3.4277 19 7 -2.2124 -9.7935 3.5693 20 6 -3.3581 -9.8120 2.9117 21 6 -3.6910 -8.7935 2.0385 22 6 -2.8037 -7.7438 1.8616 23 6 -1.6114 -7.7565 2.5709 24 6 1.4794 -4.9871 -0.0208 25 6 2.2448 -3.6624 -0.0136 26 1 -0.4850 0.8401 0.0004 27 1 0.6243 -2.5522 -0.8975 28 1 0.9982 -2.5335 2.1319 29 1 -0.3369 -1.7582 1.2459 30 1 -1.0207 -3.9640 0.3442 31 1 -1.0210 -3.9735 2.1240 32 1 1.2265 -5.0219 2.1184 33 1 -0.9663 -6.2810 0.6534 34 1 1.3216 -8.0177 2.4376 35 1 1.3316 -6.8792 3.8258 36 1 0.5762 -9.5268 4.0887 37 1 -0.1176 -8.2248 5.0998 38 1 -4.0419 -10.6353 3.0567 39 1 -4.6280 -8.8157 1.5020 40 1 -3.0352 -6.9337 1.1861 41 1 0.8526 -5.0398 -0.9110 42 1 2.1871 -5.8161 -0.0256 43 1 2.8717 -3.6003 -0.9032 44 1 2.8715 -3.6097 0.8766 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173328500.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:42 Heat of formation + Delta-G solvation = 12.548575 kcal Electronic energy + Delta-G solvation = -22515.263860 eV Core-core repulsion = 19430.826760 eV Total energy + Delta-G solvation = -3084.437100 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 286.174 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.85984 -38.33683 -36.47589 -33.97770 -32.73944 -31.71073 -29.69455 -29.40789 -28.59027 -26.00642 -24.02826 -23.60620 -21.97051 -21.62743 -20.84752 -20.05019 -18.82889 -16.73265 -16.53608 -16.31898 -15.87260 -15.72921 -14.67365 -14.37075 -14.12945 -13.66202 -13.45463 -13.38911 -13.10643 -12.93404 -12.66340 -12.27410 -12.12945 -12.01589 -11.64010 -11.39129 -11.31209 -11.09389 -10.97425 -10.78898 -10.47658 -10.34289 -10.15933 -9.99566 -9.85952 -9.45215 -9.37430 -9.10077 -8.86172 -8.68705 -8.32015 -8.01756 -5.97239 -4.03277 0.95267 1.14290 3.31692 3.36400 3.39177 3.60567 3.84154 4.28179 4.33710 4.44866 4.61961 4.80680 4.85249 5.07187 5.10276 5.22176 5.30767 5.36133 5.42666 5.51473 5.60915 5.71536 5.73874 5.90176 5.92917 6.01336 6.05052 6.14011 6.16915 6.27249 6.38244 6.40224 6.54706 6.63448 6.65924 6.81847 6.91668 7.12153 7.21124 7.34348 7.50531 7.57900 7.75712 7.83993 8.03326 8.15885 8.48893 9.01019 9.61347 11.08155 Molecular weight = 286.17amu Principal moments of inertia in cm(-1) A = 0.032998 B = 0.003279 C = 0.003152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 848.331424 B = 8538.160662 C = 8882.498093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.060 3.940 3 Si 0.889 3.111 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.278 1.278 7 C -0.513 4.513 8 H 0.053 0.947 9 C 0.049 3.951 10 C -0.105 4.105 11 C -0.143 4.143 12 C 0.089 3.911 13 N -0.678 5.678 14 C 0.127 3.873 15 H 0.065 0.935 16 C -0.108 4.108 17 C -0.070 4.070 18 C 0.125 3.875 19 N -0.483 5.483 20 C 0.097 3.903 21 C -0.174 4.174 22 C -0.060 4.060 23 C -0.141 4.141 24 C -0.099 4.099 25 C -0.109 4.109 26 H 0.259 0.741 27 H 0.023 0.977 28 H 0.032 0.968 29 H 0.090 0.910 30 H 0.053 0.947 31 H 0.037 0.963 32 H 0.072 0.928 33 H 0.338 0.662 34 H 0.088 0.912 35 H 0.080 0.920 36 H 0.085 0.915 37 H 0.088 0.912 38 H 0.155 0.845 39 H 0.136 0.864 40 H 0.132 0.868 41 H 0.053 0.947 42 H 0.051 0.949 43 H 0.047 0.953 44 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.027 -16.700 5.824 18.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.140 4.140 3 Si 0.717 3.283 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.204 1.204 7 C -0.551 4.551 8 H 0.071 0.929 9 C 0.031 3.969 10 C -0.143 4.143 11 C -0.182 4.182 12 C -0.020 4.020 13 N -0.308 5.308 14 C 0.016 3.984 15 H 0.082 0.918 16 C -0.146 4.146 17 C -0.108 4.108 18 C -0.014 4.014 19 N -0.192 5.192 20 C -0.060 4.060 21 C -0.194 4.194 22 C -0.086 4.086 23 C -0.143 4.143 24 C -0.137 4.137 25 C -0.147 4.147 26 H 0.069 0.931 27 H 0.042 0.958 28 H 0.051 0.949 29 H 0.108 0.892 30 H 0.072 0.928 31 H 0.056 0.944 32 H 0.090 0.910 33 H 0.156 0.844 34 H 0.106 0.894 35 H 0.098 0.902 36 H 0.103 0.897 37 H 0.106 0.894 38 H 0.173 0.827 39 H 0.154 0.846 40 H 0.150 0.850 41 H 0.071 0.929 42 H 0.070 0.930 43 H 0.066 0.934 44 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -4.418 -17.654 6.350 19.275 hybrid contribution -0.751 2.305 -0.419 2.460 sum -5.169 -15.349 5.932 17.248 Atomic orbital electron populations 1.69866 1.05852 1.26344 1.51037 1.24968 0.94833 0.98977 0.95251 0.86714 0.79647 0.83377 0.78580 1.20333 1.21386 1.20357 1.21222 0.92865 0.90836 1.50158 0.92861 1.18640 0.92626 0.91566 0.94075 1.21548 0.99446 0.94472 0.98866 1.22291 0.98105 0.98124 0.99690 1.21701 0.95019 0.85960 0.99291 1.60895 1.27746 1.32667 1.09471 1.20958 0.91030 0.94773 0.91607 0.91760 1.22432 0.96879 0.96632 0.98685 1.21026 0.90262 1.00433 0.99077 1.21913 0.95702 0.89433 0.94317 1.67084 1.02704 1.25939 1.23458 1.22710 0.92944 0.97675 0.92631 1.22026 1.00873 0.95648 1.00873 1.21084 0.92213 0.98119 0.97177 1.21556 0.96010 0.98344 0.98411 1.21476 0.97842 0.97913 0.96519 1.21629 0.98614 0.94352 1.00095 0.93097 0.95844 0.94897 0.89198 0.92830 0.94443 0.91017 0.84372 0.89353 0.90180 0.89692 0.89410 0.82731 0.84598 0.85030 0.92854 0.93041 0.93391 0.93526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.22 11.33 55.43 0.63 -24.59 16 2 C 0.06 1.66 5.31 -17.82 -0.09 1.57 16 3 Si 0.89 21.17 29.54 -169.99 -5.02 16.15 16 4 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 5 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 6 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 7 C -0.51 -13.92 8.56 -34.44 -0.29 -14.21 16 8 H 0.05 1.43 7.74 -52.48 -0.41 1.03 16 9 C 0.05 1.19 2.10 -91.77 -0.19 1.00 16 10 C -0.10 -2.38 4.98 -26.73 -0.13 -2.51 16 11 C -0.14 -2.60 5.16 -26.73 -0.14 -2.74 16 12 C 0.09 1.43 2.31 -67.72 -0.16 1.27 16 13 N -0.68 -9.30 6.06 -99.93 -0.61 -9.90 16 14 C 0.13 1.57 2.97 -67.89 -0.20 1.37 16 15 H 0.06 0.85 7.33 -51.93 -0.38 0.47 16 16 C -0.11 -1.17 6.51 -25.31 -0.16 -1.34 16 17 C -0.07 -0.71 6.77 -26.80 -0.18 -0.90 16 18 C 0.12 1.56 7.32 -81.98 -0.60 0.96 16 19 N -0.48 -6.17 10.38 -9.06 -0.09 -6.26 16 20 C 0.10 1.01 11.19 -17.44 -0.20 0.81 16 21 C -0.17 -1.68 10.12 -39.46 -0.40 -2.08 16 22 C -0.06 -0.66 9.63 -39.27 -0.38 -1.04 16 23 C -0.14 -1.73 5.78 -104.14 -0.60 -2.33 16 24 C -0.10 -1.71 5.53 -26.74 -0.15 -1.85 16 25 C -0.11 -2.21 5.14 -26.74 -0.14 -2.35 16 26 H 0.26 7.04 8.31 -40.82 -0.34 6.71 16 27 H 0.02 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.03 0.75 8.14 -51.93 -0.42 0.32 16 29 H 0.09 2.33 6.08 -51.93 -0.32 2.01 16 30 H 0.05 1.00 8.13 -51.93 -0.42 0.57 16 31 H 0.04 0.64 7.57 -51.92 -0.39 0.24 16 32 H 0.07 1.17 7.66 -51.93 -0.40 0.77 16 33 H 0.34 4.53 7.37 -39.29 -0.29 4.24 16 34 H 0.09 1.02 8.09 -51.93 -0.42 0.60 16 35 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 36 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 37 H 0.09 0.80 8.14 -51.93 -0.42 0.37 16 38 H 0.16 1.13 8.06 -52.49 -0.42 0.70 16 39 H 0.14 0.93 8.06 -52.49 -0.42 0.50 16 40 H 0.13 1.28 7.68 -52.49 -0.40 0.88 16 41 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 42 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 43 H 0.05 0.97 8.14 -51.92 -0.42 0.55 16 44 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 LS Contribution 343.35 15.07 5.17 5.17 Total: -1.00 -29.05 343.35 -11.15 -40.19 By element: Atomic # 1 Polarization: 10.82 SS G_CDS: -7.21 Total: 3.61 kcal Atomic # 6 Polarization: -20.36 SS G_CDS: -4.02 Total: -24.38 kcal Atomic # 7 Polarization: -40.68 SS G_CDS: -0.07 Total: -40.75 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -29.05 -11.15 -40.19 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173328500.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.743 kcal (2) G-P(sol) polarization free energy of solvation -29.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.194 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds