Wall clock time and date at job start Tue Mar 31 2020 06:19:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86797 * 120.00159 * 2 1 4 4 H 1.48500 * 109.47189 * 240.00438 * 3 2 1 5 5 H 1.48504 * 109.47230 * 0.02562 * 3 2 1 6 6 H 1.48494 * 109.47420 * 120.00536 * 3 2 1 7 7 C 1.37874 * 119.99955 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00474 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00171 * 0.26966 * 7 2 1 10 10 C 1.53009 * 109.46812 * 299.72916 * 9 7 2 11 11 C 1.53001 * 109.46532 * 179.97438 * 10 9 7 12 12 C 1.53001 * 109.47495 * 59.99941 * 11 10 9 13 13 N 1.46898 * 109.47041 * 179.97438 * 12 11 10 14 14 C 1.46903 * 110.99866 * 273.20898 * 13 12 11 15 15 H 1.08996 * 110.28188 * 37.26022 * 14 13 12 16 16 C 1.54370 * 110.30939 * 275.15918 * 14 13 12 17 17 C 1.54347 * 102.38670 * 214.78953 * 16 14 13 18 18 C 1.51473 * 105.21489 * 26.34325 * 17 16 14 19 19 N 1.32292 * 130.14548 * 162.83210 * 18 17 16 20 20 C 1.32113 * 121.90424 * 179.75758 * 19 18 17 21 21 C 1.38224 * 120.86192 * 0.19457 * 20 19 18 22 22 C 1.38580 * 118.98647 * 359.87028 * 21 20 19 23 23 C 1.38344 * 109.61275 * 342.71861 * 18 17 16 24 24 C 1.52996 * 109.46875 * 299.99795 * 12 11 10 25 25 C 1.52992 * 109.47298 * 59.99791 * 24 12 11 26 26 H 0.96999 * 119.99790 * 359.97438 * 1 2 3 27 27 H 1.08998 * 109.46871 * 59.72346 * 9 7 2 28 28 H 1.08998 * 109.46937 * 299.99389 * 10 9 7 29 29 H 1.08994 * 109.47212 * 60.00066 * 10 9 7 30 30 H 1.08998 * 109.47099 * 299.99398 * 11 10 9 31 31 H 1.09008 * 109.46621 * 180.02562 * 11 10 9 32 32 H 1.09001 * 109.46531 * 59.99903 * 12 11 10 33 33 H 1.00904 * 110.99954 * 37.15693 * 13 12 11 34 34 H 1.09000 * 110.82532 * 333.01497 * 16 14 13 35 35 H 1.08998 * 110.82486 * 96.57256 * 16 14 13 36 36 H 1.09002 * 110.29066 * 145.27438 * 17 16 14 37 37 H 1.09000 * 110.29584 * 267.30326 * 17 16 14 38 38 H 1.08000 * 119.53547 * 180.02562 * 20 19 18 39 39 H 1.07996 * 120.50789 * 179.84304 * 21 20 19 40 40 H 1.07995 * 120.72037 * 179.97438 * 22 21 20 41 41 H 1.08999 * 109.46901 * 299.99543 * 24 12 11 42 42 H 1.09002 * 109.47077 * 180.02562 * 24 12 11 43 43 H 1.09008 * 109.47027 * 179.97438 * 25 24 12 44 44 H 1.08999 * 109.47348 * 60.00025 * 25 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1030 1.6963 1.2124 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0073 10 6 0.3714 -2.5866 1.2417 11 6 -0.3940 -3.9114 1.2344 12 6 0.5998 -5.0747 1.2281 13 7 -0.1352 -6.3465 1.2217 14 6 -0.4645 -6.7710 2.5890 15 1 -0.7183 -5.9064 3.2022 16 6 0.7204 -7.5402 3.2113 17 6 0.0084 -8.5964 4.0829 18 6 -1.3408 -8.8084 3.4277 19 7 -2.2124 -9.7935 3.5693 20 6 -3.3581 -9.8120 2.9117 21 6 -3.6910 -8.7935 2.0385 22 6 -2.8037 -7.7438 1.8616 23 6 -1.6114 -7.7565 2.5709 24 6 1.4794 -4.9871 -0.0208 25 6 2.2448 -3.6624 -0.0136 26 1 -0.4850 0.8401 0.0004 27 1 0.6243 -2.5522 -0.8975 28 1 0.9982 -2.5335 2.1319 29 1 -0.3369 -1.7582 1.2459 30 1 -1.0207 -3.9640 0.3442 31 1 -1.0210 -3.9735 2.1240 32 1 1.2265 -5.0219 2.1184 33 1 -0.9663 -6.2810 0.6534 34 1 1.3216 -8.0177 2.4376 35 1 1.3316 -6.8792 3.8258 36 1 0.5762 -9.5268 4.0887 37 1 -0.1176 -8.2248 5.0998 38 1 -4.0419 -10.6353 3.0567 39 1 -4.6280 -8.8157 1.5020 40 1 -3.0352 -6.9337 1.1861 41 1 0.8526 -5.0398 -0.9110 42 1 2.1871 -5.8161 -0.0256 43 1 2.8717 -3.6003 -0.9032 44 1 2.8715 -3.6097 0.8766 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173328500.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:42 Heat of formation + Delta-G solvation = -3.233128 kcal Electronic energy + Delta-G solvation = -22515.948206 eV Core-core repulsion = 19430.826760 eV Total energy + Delta-G solvation = -3085.121446 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 286.174 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.71297 -39.73000 -37.59945 -35.41048 -34.02770 -33.07140 -31.31223 -30.21791 -30.11070 -27.28700 -25.69217 -24.43996 -23.23419 -22.80496 -22.29180 -21.08942 -20.47951 -18.37661 -17.59638 -17.37851 -16.91428 -16.78859 -16.49289 -15.53807 -15.12511 -14.95110 -14.85037 -14.46610 -14.41495 -14.18291 -13.99392 -13.78036 -13.40251 -13.02245 -12.90789 -12.87151 -12.71245 -12.53924 -12.41511 -12.15496 -11.99250 -11.95174 -11.76209 -11.66369 -11.16733 -10.86927 -10.69883 -10.57113 -10.37703 -10.26373 -9.80858 -9.21257 -8.06326 -6.20257 0.13934 0.31365 1.41379 1.42009 1.49597 2.43949 2.77523 3.06741 3.18828 3.22675 3.43357 3.81579 3.96910 3.99947 4.05999 4.15133 4.28328 4.31486 4.40395 4.47020 4.54264 4.61783 4.65552 4.74295 4.80928 4.85605 4.89980 4.96666 4.98495 5.10404 5.13225 5.21234 5.23867 5.26518 5.31907 5.37336 5.42819 5.49204 5.62256 5.69679 5.77017 6.06078 6.13415 6.22684 6.41658 6.45495 6.92899 7.01914 7.47705 8.96796 Molecular weight = 286.17amu Principal moments of inertia in cm(-1) A = 0.032998 B = 0.003279 C = 0.003152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 848.331424 B = 8538.160662 C = 8882.498093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.012 3.988 3 Si 0.949 3.051 4 H -0.273 1.273 5 H -0.285 1.285 6 H -0.271 1.271 7 C -0.535 4.535 8 H 0.050 0.950 9 C 0.046 3.954 10 C -0.097 4.097 11 C -0.131 4.131 12 C 0.103 3.897 13 N -0.671 5.671 14 C 0.127 3.873 15 H 0.057 0.943 16 C -0.103 4.103 17 C -0.066 4.066 18 C 0.107 3.893 19 N -0.508 5.508 20 C 0.091 3.909 21 C -0.170 4.170 22 C -0.071 4.071 23 C -0.158 4.158 24 C -0.091 4.091 25 C -0.101 4.101 26 H 0.259 0.741 27 H -0.010 1.010 28 H 0.027 0.973 29 H 0.054 0.946 30 H 0.046 0.954 31 H 0.049 0.951 32 H 0.075 0.925 33 H 0.340 0.660 34 H 0.083 0.917 35 H 0.090 0.910 36 H 0.092 0.908 37 H 0.098 0.902 38 H 0.184 0.816 39 H 0.166 0.834 40 H 0.141 0.859 41 H 0.048 0.952 42 H 0.072 0.928 43 H 0.044 0.956 44 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.048 -18.013 6.316 19.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.187 4.187 3 Si 0.775 3.225 4 H -0.198 1.198 5 H -0.211 1.211 6 H -0.197 1.197 7 C -0.573 4.573 8 H 0.069 0.931 9 C 0.028 3.972 10 C -0.136 4.136 11 C -0.171 4.171 12 C -0.006 4.006 13 N -0.300 5.300 14 C 0.017 3.983 15 H 0.075 0.925 16 C -0.141 4.141 17 C -0.104 4.104 18 C -0.031 4.031 19 N -0.218 5.218 20 C -0.066 4.066 21 C -0.189 4.189 22 C -0.098 4.098 23 C -0.161 4.161 24 C -0.129 4.129 25 C -0.140 4.140 26 H 0.068 0.932 27 H 0.008 0.992 28 H 0.046 0.954 29 H 0.072 0.928 30 H 0.065 0.935 31 H 0.068 0.932 32 H 0.093 0.907 33 H 0.159 0.841 34 H 0.101 0.899 35 H 0.108 0.892 36 H 0.111 0.889 37 H 0.116 0.884 38 H 0.201 0.799 39 H 0.184 0.816 40 H 0.159 0.841 41 H 0.067 0.933 42 H 0.091 0.909 43 H 0.063 0.937 44 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -4.432 -18.982 6.845 20.660 hybrid contribution -0.822 2.691 -0.598 2.877 sum -5.254 -16.291 6.247 18.222 Atomic orbital electron populations 1.70014 1.07093 1.26944 1.51619 1.25724 0.95657 1.02257 0.95026 0.85745 0.78488 0.79426 0.78804 1.19779 1.21091 1.19658 1.21641 0.93041 0.92508 1.50146 0.93148 1.18617 0.93083 0.92300 0.93217 1.21327 0.98645 0.95802 0.97797 1.22153 0.98246 0.96677 0.99978 1.21455 0.94391 0.85995 0.98799 1.60868 1.27959 1.30629 1.10567 1.20992 0.92057 0.94772 0.90502 0.92549 1.22406 0.96333 0.96720 0.98683 1.21044 0.89432 1.00600 0.99287 1.22225 0.96515 0.89557 0.94793 1.67125 1.03703 1.26395 1.24527 1.23283 0.92654 0.98618 0.92024 1.22368 1.01577 0.94631 1.00352 1.21368 0.92204 0.98939 0.97246 1.21614 0.96551 0.98493 0.99405 1.21377 0.98053 0.96589 0.96923 1.21494 0.97887 0.94522 1.00053 0.93227 0.99158 0.95432 0.92791 0.93479 0.93181 0.90658 0.84098 0.89852 0.89170 0.88921 0.88362 0.79936 0.81625 0.84149 0.93299 0.90950 0.93694 0.93266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.14 11.33 21.45 0.24 -52.89 16 2 C 0.01 0.65 5.31 84.65 0.45 1.10 16 3 Si 0.95 43.76 29.54 68.60 2.03 45.78 16 4 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 5 H -0.29 -12.93 7.11 99.48 0.71 -12.22 16 6 H -0.27 -12.14 7.11 99.48 0.71 -11.44 16 7 C -0.54 -29.60 8.56 25.60 0.22 -29.38 16 8 H 0.05 2.74 7.74 -2.91 -0.02 2.72 16 9 C 0.05 2.29 2.10 -11.54 -0.02 2.27 16 10 C -0.10 -4.49 4.98 30.60 0.15 -4.34 16 11 C -0.13 -4.75 5.16 30.60 0.16 -4.59 16 12 C 0.10 3.16 2.31 44.91 0.10 3.26 16 13 N -0.67 -17.29 6.06 -470.07 -2.85 -20.13 16 14 C 0.13 2.97 2.97 44.80 0.13 3.10 16 15 H 0.06 1.42 7.33 -2.39 -0.02 1.40 16 16 C -0.10 -2.06 6.51 31.52 0.21 -1.85 16 17 C -0.07 -1.24 6.77 30.55 0.21 -1.03 16 18 C 0.11 2.53 7.32 42.76 0.31 2.84 16 19 N -0.51 -12.20 10.38 -182.58 -1.89 -14.09 16 20 C 0.09 1.68 11.19 84.65 0.95 2.63 16 21 C -0.17 -2.86 10.12 22.35 0.23 -2.64 16 22 C -0.07 -1.46 9.63 22.47 0.22 -1.24 16 23 C -0.16 -3.68 5.78 -19.55 -0.11 -3.79 16 24 C -0.09 -3.01 5.53 30.59 0.17 -2.84 16 25 C -0.10 -4.09 5.14 30.59 0.16 -3.93 16 26 H 0.26 14.35 8.31 -92.71 -0.77 13.58 16 27 H -0.01 -0.54 8.14 -2.39 -0.02 -0.56 16 28 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 29 H 0.05 2.89 6.08 -2.39 -0.01 2.87 16 30 H 0.05 1.75 8.13 -2.39 -0.02 1.73 16 31 H 0.05 1.67 7.57 -2.38 -0.02 1.66 16 32 H 0.08 2.30 7.66 -2.39 -0.02 2.28 16 33 H 0.34 8.61 7.37 -89.69 -0.66 7.95 16 34 H 0.08 1.76 8.09 -2.39 -0.02 1.74 16 35 H 0.09 1.60 8.14 -2.39 -0.02 1.59 16 36 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 37 H 0.10 1.62 8.14 -2.39 -0.02 1.60 16 38 H 0.18 2.14 8.06 -2.91 -0.02 2.12 16 39 H 0.17 1.70 8.06 -2.91 -0.02 1.68 16 40 H 0.14 2.51 7.68 -2.91 -0.02 2.49 16 41 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 42 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 43 H 0.04 1.80 8.14 -2.38 -0.02 1.78 16 44 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 Total: -1.00 -63.23 343.35 1.36 -61.87 By element: Atomic # 1 Polarization: 19.59 SS G_CDS: 0.32 Total: 19.91 kcal Atomic # 6 Polarization: -43.96 SS G_CDS: 3.52 Total: -40.44 kcal Atomic # 7 Polarization: -82.62 SS G_CDS: -4.50 Total: -87.12 kcal Atomic # 14 Polarization: 43.76 SS G_CDS: 2.03 Total: 45.78 kcal Total: -63.23 1.36 -61.87 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173328500.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.639 kcal (2) G-P(sol) polarization free energy of solvation -63.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.872 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds