Wall clock time and date at job start Tue Mar 31 2020 06:00:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46900 * 111.00167 * 2 1 4 4 C 1.46895 * 110.99702 * 123.95480 * 2 1 3 5 5 C 1.53006 * 109.47189 * 169.99776 * 4 2 1 6 6 N 1.46492 * 109.47466 * 179.97438 * 5 4 2 7 7 C 1.34688 * 125.81287 * 125.33390 * 6 5 4 8 8 C 1.37912 * 107.38443 * 180.16006 * 7 6 5 9 9 C 1.47965 * 126.37202 * 179.83991 * 8 7 6 10 10 C 1.40287 * 120.34502 * 179.69083 * 9 8 7 11 11 C 1.36640 * 118.60426 * 179.74469 * 10 9 8 12 12 C 1.40892 * 119.26245 * 0.52033 * 11 10 9 13 13 C 1.40956 * 119.67949 * 179.74548 * 12 11 10 14 14 H 1.07999 * 120.00141 * 359.72718 * 13 12 11 15 15 C 1.40045 * 119.99867 * 179.72947 * 13 12 11 16 16 N 1.30752 * 120.00003 * 359.72516 * 15 13 12 17 17 Si 1.86800 * 120.00245 * 179.97438 * 15 13 12 18 18 H 1.48495 * 109.47142 * 59.99709 * 17 15 13 19 19 H 1.48495 * 109.47422 * 180.02562 * 17 15 13 20 20 H 1.48507 * 109.46915 * 300.00370 * 17 15 13 21 21 N 1.33789 * 120.63837 * 359.47410 * 12 11 10 22 22 C 1.31181 * 121.50403 * 0.26831 * 21 12 11 23 23 C 1.41111 * 107.25271 * 359.57804 * 8 7 6 24 24 N 1.30536 * 108.11900 * 0.26055 * 23 8 7 25 25 H 1.09004 * 109.47194 * 296.04975 * 1 2 3 26 26 H 1.09007 * 109.47273 * 56.04576 * 1 2 3 27 27 H 1.09000 * 109.47625 * 176.04444 * 1 2 3 28 28 H 1.08997 * 109.46633 * 183.95590 * 3 2 1 29 29 H 1.09000 * 109.47059 * 303.95106 * 3 2 1 30 30 H 1.08994 * 109.46740 * 63.95515 * 3 2 1 31 31 H 1.09001 * 109.47747 * 49.99926 * 4 2 1 32 32 H 1.08995 * 109.47496 * 289.99832 * 4 2 1 33 33 H 1.09001 * 109.46654 * 59.99480 * 5 4 2 34 34 H 1.09005 * 109.46598 * 300.00011 * 5 4 2 35 35 H 1.08001 * 126.30473 * 0.02562 * 7 6 5 36 36 H 1.07993 * 120.70094 * 0.02562 * 10 9 8 37 37 H 1.08001 * 120.36769 * 180.26855 * 11 10 9 38 38 H 0.97000 * 120.00238 * 180.02562 * 16 15 13 39 39 H 1.07997 * 119.65998 * 180.02562 * 22 21 12 40 40 H 1.08003 * 125.93635 * 180.24118 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9953 -0.7660 1.1376 5 6 3.5044 -0.9555 0.9703 6 7 4.0295 -1.7188 2.1051 7 6 4.7482 -2.8551 2.0255 8 6 5.0400 -3.2492 3.3145 9 6 5.8101 -4.4484 3.7124 10 6 6.0384 -4.7264 5.0683 11 6 6.7496 -5.8462 5.3958 12 6 7.2384 -6.6767 4.3680 13 6 7.9776 -7.8312 4.6956 14 1 8.1707 -8.0732 5.7303 15 6 8.4618 -8.6645 3.6795 16 7 8.2236 -8.3743 2.4270 17 14 9.4422 -10.1941 4.1136 18 1 8.6092 -11.0951 4.9499 19 1 9.8372 -10.8991 2.8678 20 1 10.6601 -9.8038 4.8685 21 7 7.0030 -6.3829 3.0841 22 6 6.3194 -5.3180 2.7387 23 6 4.4725 -2.2928 4.1831 24 7 3.8748 -1.3882 3.4562 25 1 -0.3634 0.4513 0.9233 26 1 -0.3634 0.5740 -0.8525 27 1 -0.3634 -1.0252 -0.0709 28 1 3.0828 1.3431 -0.0709 29 1 1.5899 1.9163 -0.8525 30 1 1.7044 1.8722 0.9233 31 1 1.5089 -1.7407 1.1757 32 1 1.7975 -0.2248 2.0627 33 1 3.9909 0.0192 0.9322 34 1 3.7022 -1.4967 0.0451 35 1 5.0402 -3.3649 1.1193 36 1 5.6563 -4.0715 5.8374 37 1 6.9383 -6.0899 6.4309 38 1 8.5586 -8.9516 1.7232 39 1 6.1466 -5.1096 1.6932 40 1 4.5237 -2.3070 5.2619 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001206348400.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:06 Heat of formation + Delta-G solvation = 115.272747 kcal Electronic energy + Delta-G solvation = -21084.283597 eV Core-core repulsion = 17900.760608 eV Total energy + Delta-G solvation = -3183.522989 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 286.149 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.60995 -38.09949 -37.77830 -33.93733 -33.22588 -31.06350 -30.58513 -29.39929 -28.04603 -27.88265 -25.38752 -24.40295 -22.21668 -21.77325 -21.44998 -19.77652 -19.49057 -17.47039 -16.94218 -16.01128 -15.58229 -15.44303 -15.02983 -14.54690 -14.22326 -14.11419 -14.00981 -13.47537 -13.38013 -12.71629 -12.55829 -12.38798 -12.21701 -12.16844 -12.04035 -11.89439 -11.74312 -11.32878 -11.19272 -11.04884 -10.78969 -10.53137 -10.22000 -9.94607 -9.55876 -9.02446 -8.73286 -8.68459 -8.13430 -7.56817 -6.95220 -6.44800 -4.47466 2.14026 2.60578 2.74381 3.03780 3.05702 3.07805 3.10739 3.72454 3.81980 3.90375 4.59800 4.64965 4.78763 4.82131 5.05320 5.14402 5.22202 5.24334 5.31619 5.36405 5.54994 5.57363 5.60872 5.69175 5.94248 6.03971 6.10088 6.16960 6.22609 6.41712 6.59862 6.63148 6.80132 6.87660 7.07041 7.12558 7.35915 7.45638 7.63472 7.80393 8.02115 8.16794 8.20707 8.60940 8.89633 10.09043 10.26019 Molecular weight = 286.15amu Principal moments of inertia in cm(-1) A = 0.037360 B = 0.002754 C = 0.002628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 749.290455 B =10165.268429 C =10652.167310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.547 5.547 3 C 0.018 3.982 4 C 0.044 3.956 5 C 0.144 3.856 6 N -0.377 5.377 7 C 0.017 3.983 8 C -0.123 4.123 9 C -0.223 4.223 10 C -0.043 4.043 11 C -0.271 4.271 12 C 0.251 3.749 13 C -0.421 4.421 14 H 0.084 0.916 15 C 0.066 3.934 16 N -0.709 5.709 17 Si 0.909 3.091 18 H -0.264 1.264 19 H -0.277 1.277 20 H -0.264 1.264 21 N -0.486 5.486 22 C 0.142 3.858 23 C 0.041 3.959 24 N -0.311 5.311 25 H 0.027 0.973 26 H 0.070 0.930 27 H 0.070 0.930 28 H 0.071 0.929 29 H 0.069 0.931 30 H 0.028 0.972 31 H 0.080 0.920 32 H 0.050 0.950 33 H 0.077 0.923 34 H 0.100 0.900 35 H 0.170 0.830 36 H 0.095 0.905 37 H 0.099 0.901 38 H 0.274 0.726 39 H 0.116 0.884 40 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.382 12.170 -4.868 16.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.271 5.271 3 C -0.130 4.130 4 C -0.085 4.085 5 C 0.022 3.978 6 N -0.161 5.161 7 C -0.127 4.127 8 C -0.134 4.134 9 C -0.230 4.230 10 C -0.067 4.067 11 C -0.293 4.293 12 C 0.127 3.873 13 C -0.451 4.451 14 H 0.102 0.898 15 C -0.160 4.160 16 N -0.330 5.330 17 Si 0.733 3.267 18 H -0.189 1.189 19 H -0.202 1.202 20 H -0.189 1.189 21 N -0.197 5.197 22 C -0.026 4.026 23 C -0.145 4.145 24 N -0.132 5.132 25 H 0.045 0.955 26 H 0.089 0.911 27 H 0.088 0.912 28 H 0.090 0.910 29 H 0.088 0.912 30 H 0.047 0.953 31 H 0.098 0.902 32 H 0.069 0.931 33 H 0.095 0.905 34 H 0.119 0.881 35 H 0.187 0.813 36 H 0.113 0.887 37 H 0.117 0.883 38 H 0.086 0.914 39 H 0.134 0.866 40 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -9.560 12.400 -6.249 16.859 hybrid contribution 0.268 -0.404 1.534 1.609 sum -9.292 11.996 -4.715 15.890 Atomic orbital electron populations 1.22376 0.86722 1.02542 1.00604 1.61922 1.08373 1.14054 1.42764 1.22492 1.01103 0.88704 1.00723 1.22363 0.94588 0.99294 0.92226 1.21471 0.93685 0.96651 0.86001 1.48041 1.43044 1.20175 1.04825 1.22679 1.00192 0.90280 0.99559 1.19254 1.05308 0.98212 0.90634 1.18425 1.11981 0.98545 0.94050 1.20512 0.96237 0.95722 0.94248 1.21399 1.09345 0.99647 0.98934 1.18603 0.89778 0.91860 0.87050 1.19613 1.26841 1.04371 0.94307 0.89767 1.26125 0.95901 0.99261 0.94717 1.70133 1.29986 1.32876 0.99967 0.86367 0.80441 0.80987 0.78944 1.18859 1.20154 1.18863 1.68763 1.16229 1.16242 1.18501 1.22604 0.92551 0.90383 0.97039 1.23843 0.97906 0.92968 0.99741 1.76888 1.25182 1.24478 0.86703 0.95479 0.91135 0.91157 0.91034 0.91196 0.95319 0.90160 0.93129 0.90453 0.88146 0.81312 0.88694 0.88330 0.91427 0.86638 0.80696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 9.57 60.06 0.57 0.78 16 2 N -0.55 -5.09 5.02 -251.26 -1.26 -6.36 16 3 C 0.02 0.14 9.32 60.06 0.56 0.70 16 4 C 0.04 0.48 5.13 -3.82 -0.02 0.46 16 5 C 0.14 1.65 6.42 -4.04 -0.03 1.62 16 6 N -0.38 -5.79 3.66 -60.74 -0.22 -6.01 16 7 C 0.02 0.28 10.90 -16.42 -0.18 0.10 16 8 C -0.12 -2.35 6.09 -104.94 -0.64 -2.99 16 9 C -0.22 -4.95 5.92 -104.43 -0.62 -5.57 16 10 C -0.04 -0.96 9.63 -39.39 -0.38 -1.34 16 11 C -0.27 -6.56 9.76 -39.16 -0.38 -6.94 16 12 C 0.25 6.79 6.55 -84.98 -0.56 6.23 16 13 C -0.42 -11.07 9.12 -37.88 -0.35 -11.42 16 14 H 0.08 2.05 7.85 -52.49 -0.41 1.64 16 15 C 0.07 1.65 5.50 -17.33 -0.10 1.56 16 16 N -0.71 -18.57 11.44 55.55 0.64 -17.93 16 17 Si 0.91 18.21 29.56 -169.99 -5.02 13.18 16 18 H -0.26 -5.22 7.11 56.52 0.40 -4.81 16 19 H -0.28 -5.40 7.11 56.52 0.40 -5.00 16 20 H -0.26 -5.22 7.11 56.52 0.40 -4.81 16 21 N -0.49 -13.22 7.83 -10.84 -0.08 -13.31 16 22 C 0.14 3.39 10.75 -17.12 -0.18 3.21 16 23 C 0.04 0.73 11.45 -17.01 -0.19 0.53 16 24 N -0.31 -5.33 12.34 30.84 0.38 -4.95 16 25 H 0.03 0.21 8.14 -51.93 -0.42 -0.21 16 26 H 0.07 0.46 8.12 -51.92 -0.42 0.03 16 27 H 0.07 0.54 8.12 -51.93 -0.42 0.12 16 28 H 0.07 0.54 6.47 -51.93 -0.34 0.20 16 29 H 0.07 0.46 8.12 -51.93 -0.42 0.03 16 30 H 0.03 0.23 8.14 -51.93 -0.42 -0.19 16 31 H 0.08 0.93 8.06 -51.93 -0.42 0.52 16 32 H 0.05 0.62 8.12 -51.93 -0.42 0.20 16 33 H 0.08 0.82 6.55 -51.93 -0.34 0.48 16 34 H 0.10 1.00 8.07 -51.93 -0.42 0.58 16 35 H 0.17 2.44 7.34 -52.49 -0.38 2.05 16 36 H 0.09 1.81 7.16 -52.49 -0.38 1.43 16 37 H 0.10 2.19 8.06 -52.49 -0.42 1.77 16 38 H 0.27 6.50 8.29 -40.82 -0.34 6.16 16 39 H 0.12 2.45 7.05 -52.49 -0.37 2.08 16 40 H 0.18 2.69 7.41 -52.48 -0.39 2.30 16 LS Contribution 338.34 15.07 5.10 5.10 Total: -1.00 -30.27 338.34 -8.50 -38.77 By element: Atomic # 1 Polarization: 10.10 SS G_CDS: -5.53 Total: 4.57 kcal Atomic # 6 Polarization: -10.58 SS G_CDS: -2.48 Total: -13.07 kcal Atomic # 7 Polarization: -48.00 SS G_CDS: -0.55 Total: -48.55 kcal Atomic # 14 Polarization: 18.21 SS G_CDS: -5.02 Total: 13.18 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -30.27 -8.50 -38.77 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206348400.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.038 kcal (2) G-P(sol) polarization free energy of solvation -30.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 123.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.766 kcal (6) G-S(sol) free energy of system = (1) + (5) 115.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds