Wall clock time and date at job start Tue Mar 31 2020 06:00:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46894 * 1 3 3 C 1.46901 * 110.99956 * 2 1 4 4 C 1.46904 * 111.00208 * 123.94979 * 2 1 3 5 5 C 1.53001 * 109.46863 * 66.04635 * 4 2 1 6 6 N 1.46502 * 109.47079 * 180.02562 * 5 4 2 7 7 C 1.34827 * 125.89176 * 125.00208 * 6 5 4 8 8 C 1.36428 * 107.60709 * 179.97438 * 7 6 5 9 9 C 1.48497 * 126.22163 * 179.97438 * 8 7 6 10 10 C 1.39689 * 120.40492 * 0.02562 * 9 8 7 11 11 N 1.31922 * 121.15175 * 179.97438 * 10 9 8 12 12 C 1.31517 * 122.11728 * 0.02562 * 11 10 9 13 13 C 1.40779 * 120.65459 * 0.02562 * 12 11 10 14 14 C 1.41434 * 120.60470 * 180.02562 * 13 12 11 15 15 H 1.08005 * 119.99388 * 23.41701 * 14 13 12 16 16 C 1.39926 * 120.00002 * 203.41523 * 14 13 12 17 17 N 1.30825 * 120.00222 * 17.50379 * 16 14 13 18 18 Si 1.86809 * 119.99767 * 197.50878 * 16 14 13 19 19 H 1.48492 * 109.47247 * 60.00023 * 18 16 14 20 20 H 1.48500 * 109.47004 * 179.97438 * 18 16 14 21 21 H 1.48495 * 109.46987 * 299.99763 * 18 16 14 22 22 C 1.39088 * 120.40946 * 180.02562 * 9 8 7 23 23 C 1.40845 * 107.55904 * 0.22564 * 8 7 6 24 24 N 1.30667 * 108.09579 * 359.61772 * 23 8 7 25 25 H 1.09000 * 109.47428 * 296.04567 * 1 2 3 26 26 H 1.08996 * 109.47333 * 56.04620 * 1 2 3 27 27 H 1.09005 * 109.47170 * 176.05216 * 1 2 3 28 28 H 1.09000 * 109.47164 * 183.95574 * 3 2 1 29 29 H 1.09008 * 109.46982 * 303.95163 * 3 2 1 30 30 H 1.09001 * 109.47402 * 63.95042 * 3 2 1 31 31 H 1.09003 * 109.46850 * 306.04982 * 4 2 1 32 32 H 1.08994 * 109.47308 * 186.04745 * 4 2 1 33 33 H 1.09002 * 109.47018 * 59.99953 * 5 4 2 34 34 H 1.09001 * 109.47016 * 300.00428 * 5 4 2 35 35 H 1.07994 * 126.19877 * 359.95868 * 7 6 5 36 36 H 1.07994 * 119.42446 * 359.95945 * 10 9 8 37 37 H 1.07989 * 119.67147 * 180.02562 * 12 11 10 38 38 H 0.96997 * 120.00189 * 180.02562 * 17 16 14 39 39 H 1.08000 * 120.94766 * 359.74398 * 22 9 8 40 40 H 1.07996 * 125.95171 * 179.73419 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9954 -0.7659 1.1377 5 6 1.6315 -2.2426 0.9705 6 7 2.1560 -3.0063 2.1053 7 6 1.4381 -3.8065 2.9190 8 6 2.2942 -4.3302 3.8431 9 6 1.9369 -5.2666 4.9388 10 6 0.6174 -5.6961 5.0997 11 7 0.2837 -6.5281 6.0676 12 6 1.1659 -6.9932 6.9250 13 6 2.5189 -6.6136 6.8398 14 6 3.4668 -7.1148 7.7621 15 1 3.2772 -8.0431 8.2805 16 6 4.6502 -6.4079 8.0029 17 7 4.7412 -5.1486 7.6603 18 14 6.1001 -7.2626 8.8134 19 1 6.5315 -8.4089 7.9738 20 1 7.2244 -6.3028 8.9551 21 1 5.6974 -7.7555 10.1550 22 6 2.9119 -5.7269 5.8176 23 6 3.5775 -3.8166 3.5726 24 7 3.4894 -3.0317 2.5317 25 1 -0.3634 0.4512 0.9233 26 1 -0.3634 0.5739 -0.8524 27 1 -0.3634 -1.0253 -0.0708 28 1 3.0827 1.3433 -0.0709 29 1 1.5897 1.9163 -0.8525 30 1 1.7043 1.8724 0.9233 31 1 1.5610 -0.3871 2.0628 32 1 3.0797 -0.6610 1.1757 33 1 2.0658 -2.6213 0.0452 34 1 0.5472 -2.3474 0.9324 35 1 0.3774 -3.9980 2.8516 36 1 -0.1428 -5.3407 4.4200 37 1 0.8493 -7.6729 7.7020 38 1 5.5616 -4.6587 7.8269 39 1 3.9414 -5.4165 5.7169 40 1 4.4778 -4.0352 4.1276 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001206352920.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:08 Heat of formation + Delta-G solvation = 105.781726 kcal Electronic energy + Delta-G solvation = -21380.842336 eV Core-core repulsion = 18196.907786 eV Total energy + Delta-G solvation = -3183.934551 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 286.149 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.79153 -38.17639 -37.82369 -34.06976 -33.54929 -31.45582 -30.35856 -29.47723 -27.96334 -27.43191 -25.60018 -24.55095 -22.25077 -21.89732 -21.47959 -19.93185 -19.50090 -17.34765 -16.78901 -15.95021 -15.64917 -15.37709 -15.19140 -14.89395 -14.57249 -14.27273 -13.93420 -13.48259 -13.40734 -12.74607 -12.60834 -12.41960 -12.38479 -12.15120 -12.03573 -11.80825 -11.64006 -11.46375 -11.29384 -11.23027 -10.92235 -10.58848 -10.32807 -9.83336 -9.35942 -9.10866 -9.06810 -8.75808 -8.07307 -7.80795 -7.01387 -6.78564 -4.47576 2.02336 2.55677 2.67295 2.84571 3.03228 3.05663 3.22733 3.69091 3.74558 3.86528 4.43222 4.64759 4.74876 4.80911 5.00976 5.07192 5.15458 5.18190 5.27642 5.34578 5.53789 5.56086 5.60413 5.68142 5.72569 5.91293 6.03596 6.13073 6.30518 6.55891 6.57759 6.61637 6.80345 7.00223 7.08080 7.11349 7.30507 7.34105 7.73530 7.87705 7.96122 8.10785 8.45228 8.69526 8.74054 9.66217 10.07430 Molecular weight = 286.15amu Principal moments of inertia in cm(-1) A = 0.023842 B = 0.003388 C = 0.003050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1174.114865 B = 8261.336183 C = 9177.044643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.546 5.546 3 C 0.026 3.974 4 C 0.043 3.957 5 C 0.144 3.856 6 N -0.381 5.381 7 C 0.047 3.953 8 C -0.158 4.158 9 C -0.044 4.044 10 C -0.035 4.035 11 N -0.469 5.469 12 C -0.025 4.025 13 C 0.066 3.934 14 C -0.451 4.451 15 H 0.082 0.918 16 C 0.076 3.924 17 N -0.789 5.789 18 Si 0.911 3.089 19 H -0.263 1.263 20 H -0.278 1.278 21 H -0.264 1.264 22 C -0.125 4.125 23 C 0.066 3.934 24 N -0.305 5.305 25 H 0.028 0.972 26 H 0.070 0.930 27 H 0.071 0.929 28 H 0.071 0.929 29 H 0.070 0.930 30 H 0.027 0.973 31 H 0.041 0.959 32 H 0.090 0.910 33 H 0.089 0.911 34 H 0.091 0.909 35 H 0.171 0.829 36 H 0.115 0.885 37 H 0.124 0.876 38 H 0.283 0.717 39 H 0.129 0.871 40 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.913 9.536 -11.980 15.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 N -0.270 5.270 3 C -0.122 4.122 4 C -0.085 4.085 5 C 0.021 3.979 6 N -0.164 5.164 7 C -0.098 4.098 8 C -0.170 4.170 9 C -0.047 4.047 10 C -0.193 4.193 11 N -0.176 5.176 12 C -0.187 4.187 13 C 0.061 3.939 14 C -0.481 4.481 15 H 0.100 0.900 16 C -0.143 4.143 17 N -0.414 5.414 18 Si 0.735 3.265 19 H -0.187 1.187 20 H -0.203 1.203 21 H -0.189 1.189 22 C -0.151 4.151 23 C -0.120 4.120 24 N -0.126 5.126 25 H 0.047 0.953 26 H 0.089 0.911 27 H 0.089 0.911 28 H 0.089 0.911 29 H 0.089 0.911 30 H 0.045 0.955 31 H 0.059 0.941 32 H 0.109 0.891 33 H 0.107 0.893 34 H 0.109 0.891 35 H 0.188 0.812 36 H 0.132 0.868 37 H 0.142 0.858 38 H 0.095 0.905 39 H 0.147 0.853 40 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -2.892 10.129 -13.263 16.937 hybrid contribution 0.823 -0.080 1.676 1.869 sum -2.070 10.049 -11.587 15.477 Atomic orbital electron populations 1.22512 0.87314 1.02530 1.00850 1.61918 1.08097 1.14302 1.42720 1.22378 1.01061 0.88188 1.00612 1.22382 1.02003 0.92486 0.91649 1.21499 0.98819 0.90457 0.87076 1.48277 1.06033 1.36982 1.25075 1.22427 0.98275 0.95888 0.93164 1.19099 0.92540 1.05246 1.00094 1.18786 0.95118 0.96669 0.94148 1.21595 0.93248 1.03538 1.00888 1.66887 1.38638 1.08949 1.03129 1.22461 0.89590 1.06131 1.00474 1.18446 0.92587 0.91194 0.91638 1.19514 1.00794 1.07188 1.20575 0.89970 1.25944 0.99779 0.94194 0.94377 1.69790 1.27626 1.07709 1.36236 0.86319 0.79817 0.80105 0.80281 1.18713 1.20253 1.18887 1.21651 0.98648 1.00867 0.93971 1.24038 0.98809 0.94916 0.94276 1.77118 0.95793 1.23780 1.15895 0.95309 0.91088 0.91059 0.91060 0.91123 0.95457 0.94080 0.89111 0.89279 0.89060 0.81168 0.86754 0.85805 0.90549 0.85325 0.79871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.12 9.32 60.06 0.56 0.68 16 2 N -0.55 -5.07 5.02 -251.26 -1.26 -6.33 16 3 C 0.03 0.20 9.57 60.07 0.57 0.78 16 4 C 0.04 0.47 5.14 -3.82 -0.02 0.46 16 5 C 0.14 1.62 6.42 -4.04 -0.03 1.59 16 6 N -0.38 -5.85 3.67 -61.10 -0.22 -6.07 16 7 C 0.05 0.77 10.84 -16.89 -0.18 0.59 16 8 C -0.16 -3.14 6.05 -105.33 -0.64 -3.78 16 9 C -0.04 -1.01 5.89 -104.81 -0.62 -1.62 16 10 C -0.03 -0.80 10.73 -16.97 -0.18 -0.98 16 11 N -0.47 -11.61 10.32 -12.29 -0.13 -11.73 16 12 C -0.03 -0.64 10.96 -16.73 -0.18 -0.82 16 13 C 0.07 1.72 5.59 -106.71 -0.60 1.12 16 14 C -0.45 -11.49 9.08 -37.73 -0.34 -11.83 16 15 H 0.08 1.99 7.90 -52.48 -0.41 1.58 16 16 C 0.08 1.82 5.18 -17.35 -0.09 1.73 16 17 N -0.79 -19.44 10.92 55.55 0.61 -18.83 16 18 Si 0.91 17.95 29.59 -169.99 -5.03 12.92 16 19 H -0.26 -5.16 7.11 56.52 0.40 -4.76 16 20 H -0.28 -5.35 7.11 56.52 0.40 -4.94 16 21 H -0.26 -5.16 7.11 56.52 0.40 -4.76 16 22 C -0.13 -3.15 8.32 -38.25 -0.32 -3.47 16 23 C 0.07 1.26 11.44 -17.06 -0.20 1.07 16 24 N -0.31 -5.44 12.38 30.80 0.38 -5.06 16 25 H 0.03 0.22 8.14 -51.93 -0.42 -0.20 16 26 H 0.07 0.45 8.12 -51.93 -0.42 0.03 16 27 H 0.07 0.49 6.47 -51.93 -0.34 0.15 16 28 H 0.07 0.56 8.12 -51.93 -0.42 0.13 16 29 H 0.07 0.46 8.12 -51.92 -0.42 0.04 16 30 H 0.03 0.22 8.14 -51.93 -0.42 -0.21 16 31 H 0.04 0.49 8.12 -51.93 -0.42 0.07 16 32 H 0.09 1.12 8.06 -51.93 -0.42 0.70 16 33 H 0.09 0.98 8.14 -51.93 -0.42 0.55 16 34 H 0.09 0.82 6.48 -51.93 -0.34 0.48 16 35 H 0.17 2.29 7.29 -52.49 -0.38 1.91 16 36 H 0.11 2.26 7.01 -52.49 -0.37 1.90 16 37 H 0.12 2.90 8.06 -52.49 -0.42 2.47 16 38 H 0.28 6.37 8.30 -40.82 -0.34 6.03 16 39 H 0.13 3.25 5.29 -52.49 -0.28 2.97 16 40 H 0.18 3.37 7.40 -52.49 -0.39 2.98 16 LS Contribution 336.93 15.07 5.08 5.08 Total: -1.00 -29.14 336.93 -8.27 -37.41 By element: Atomic # 1 Polarization: 12.55 SS G_CDS: -5.44 Total: 7.11 kcal Atomic # 6 Polarization: -12.24 SS G_CDS: -2.26 Total: -14.49 kcal Atomic # 7 Polarization: -47.41 SS G_CDS: -0.62 Total: -48.03 kcal Atomic # 14 Polarization: 17.95 SS G_CDS: -5.03 Total: 12.92 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -29.14 -8.27 -37.41 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206352920.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.189 kcal (2) G-P(sol) polarization free energy of solvation -29.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 114.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.407 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds