Wall clock time and date at job start Tue Mar 31 2020 06:00:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46894 * 1 3 3 C 1.46901 * 110.99956 * 2 1 4 4 C 1.46904 * 111.00208 * 123.94979 * 2 1 3 5 5 C 1.53001 * 109.46863 * 66.04635 * 4 2 1 6 6 N 1.46502 * 109.47079 * 180.02562 * 5 4 2 7 7 C 1.34827 * 125.89176 * 125.00208 * 6 5 4 8 8 C 1.36428 * 107.60709 * 179.97438 * 7 6 5 9 9 C 1.48497 * 126.22163 * 179.97438 * 8 7 6 10 10 C 1.39689 * 120.40492 * 0.02562 * 9 8 7 11 11 N 1.31922 * 121.15175 * 179.97438 * 10 9 8 12 12 C 1.31517 * 122.11728 * 0.02562 * 11 10 9 13 13 C 1.40779 * 120.65459 * 0.02562 * 12 11 10 14 14 C 1.41434 * 120.60470 * 180.02562 * 13 12 11 15 15 H 1.08005 * 119.99388 * 23.41701 * 14 13 12 16 16 C 1.39926 * 120.00002 * 203.41523 * 14 13 12 17 17 N 1.30825 * 120.00222 * 17.50379 * 16 14 13 18 18 Si 1.86809 * 119.99767 * 197.50878 * 16 14 13 19 19 H 1.48492 * 109.47247 * 60.00023 * 18 16 14 20 20 H 1.48500 * 109.47004 * 179.97438 * 18 16 14 21 21 H 1.48495 * 109.46987 * 299.99763 * 18 16 14 22 22 C 1.39088 * 120.40946 * 180.02562 * 9 8 7 23 23 C 1.40845 * 107.55904 * 0.22564 * 8 7 6 24 24 N 1.30667 * 108.09579 * 359.61772 * 23 8 7 25 25 H 1.09000 * 109.47428 * 296.04567 * 1 2 3 26 26 H 1.08996 * 109.47333 * 56.04620 * 1 2 3 27 27 H 1.09005 * 109.47170 * 176.05216 * 1 2 3 28 28 H 1.09000 * 109.47164 * 183.95574 * 3 2 1 29 29 H 1.09008 * 109.46982 * 303.95163 * 3 2 1 30 30 H 1.09001 * 109.47402 * 63.95042 * 3 2 1 31 31 H 1.09003 * 109.46850 * 306.04982 * 4 2 1 32 32 H 1.08994 * 109.47308 * 186.04745 * 4 2 1 33 33 H 1.09002 * 109.47018 * 59.99953 * 5 4 2 34 34 H 1.09001 * 109.47016 * 300.00428 * 5 4 2 35 35 H 1.07994 * 126.19877 * 359.95868 * 7 6 5 36 36 H 1.07994 * 119.42446 * 359.95945 * 10 9 8 37 37 H 1.07989 * 119.67147 * 180.02562 * 12 11 10 38 38 H 0.96997 * 120.00189 * 180.02562 * 17 16 14 39 39 H 1.08000 * 120.94766 * 359.74398 * 22 9 8 40 40 H 1.07996 * 125.95171 * 179.73419 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9954 -0.7659 1.1377 5 6 1.6315 -2.2426 0.9705 6 7 2.1560 -3.0063 2.1053 7 6 1.4381 -3.8065 2.9190 8 6 2.2942 -4.3302 3.8431 9 6 1.9369 -5.2666 4.9388 10 6 0.6174 -5.6961 5.0997 11 7 0.2837 -6.5281 6.0676 12 6 1.1659 -6.9932 6.9250 13 6 2.5189 -6.6136 6.8398 14 6 3.4668 -7.1148 7.7621 15 1 3.2772 -8.0431 8.2805 16 6 4.6502 -6.4079 8.0029 17 7 4.7412 -5.1486 7.6603 18 14 6.1001 -7.2626 8.8134 19 1 6.5315 -8.4089 7.9738 20 1 7.2244 -6.3028 8.9551 21 1 5.6974 -7.7555 10.1550 22 6 2.9119 -5.7269 5.8176 23 6 3.5775 -3.8166 3.5726 24 7 3.4894 -3.0317 2.5317 25 1 -0.3634 0.4512 0.9233 26 1 -0.3634 0.5739 -0.8524 27 1 -0.3634 -1.0253 -0.0708 28 1 3.0827 1.3433 -0.0709 29 1 1.5897 1.9163 -0.8525 30 1 1.7043 1.8724 0.9233 31 1 1.5610 -0.3871 2.0628 32 1 3.0797 -0.6610 1.1757 33 1 2.0658 -2.6213 0.0452 34 1 0.5472 -2.3474 0.9324 35 1 0.3774 -3.9980 2.8516 36 1 -0.1428 -5.3407 4.4200 37 1 0.8493 -7.6729 7.7020 38 1 5.5616 -4.6587 7.8269 39 1 3.9414 -5.4165 5.7169 40 1 4.4778 -4.0352 4.1276 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001206352920.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:08 Heat of formation + Delta-G solvation = 87.746764 kcal Electronic energy + Delta-G solvation = -21381.624391 eV Core-core repulsion = 18196.907786 eV Total energy + Delta-G solvation = -3184.716605 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 286.149 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.16456 -39.93520 -38.65093 -35.91127 -34.76041 -33.03426 -32.21191 -30.71391 -28.88034 -28.50169 -27.46280 -25.52860 -23.96565 -23.48051 -22.46088 -21.37493 -20.92141 -19.07088 -18.16384 -17.24070 -16.96882 -16.79161 -16.35551 -16.08916 -15.88310 -15.60860 -15.26028 -14.80320 -14.48201 -14.15900 -14.15058 -13.85648 -13.42773 -13.38074 -13.16743 -13.11403 -13.00755 -12.68104 -12.60946 -12.57238 -12.23082 -12.16599 -11.70311 -11.57201 -11.15263 -10.75197 -10.38296 -9.95818 -9.69748 -9.47477 -8.72903 -8.51137 -6.40262 0.46418 0.99537 1.10151 1.41164 1.51416 1.51853 1.56720 2.10907 2.21076 2.82555 2.93538 3.48285 3.83275 3.89319 3.93927 3.95763 4.18347 4.20018 4.29341 4.40494 4.45943 4.52941 4.63042 4.63895 4.71829 4.78707 4.80355 4.87923 4.93081 4.96873 5.02843 5.20157 5.30841 5.40350 5.62054 5.83941 5.90135 5.95670 5.98791 6.08840 6.14520 6.55964 6.70243 6.81304 6.85406 7.77173 8.28459 Molecular weight = 286.15amu Principal moments of inertia in cm(-1) A = 0.023842 B = 0.003388 C = 0.003050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1174.114865 B = 8261.336183 C = 9177.044643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 N -0.551 5.551 3 C 0.024 3.976 4 C 0.052 3.948 5 C 0.137 3.863 6 N -0.368 5.368 7 C 0.077 3.923 8 C -0.201 4.201 9 C -0.035 4.035 10 C -0.040 4.040 11 N -0.478 5.478 12 C -0.050 4.050 13 C 0.041 3.959 14 C -0.484 4.484 15 H 0.084 0.916 16 C 0.038 3.962 17 N -0.816 5.816 18 Si 0.984 3.016 19 H -0.261 1.261 20 H -0.268 1.268 21 H -0.258 1.258 22 C -0.151 4.151 23 C 0.054 3.946 24 N -0.316 5.316 25 H 0.026 0.974 26 H 0.084 0.916 27 H 0.081 0.919 28 H 0.067 0.933 29 H 0.087 0.913 30 H 0.024 0.976 31 H 0.030 0.970 32 H 0.072 0.928 33 H 0.098 0.902 34 H 0.125 0.875 35 H 0.210 0.790 36 H 0.152 0.848 37 H 0.131 0.869 38 H 0.291 0.709 39 H 0.119 0.881 40 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.741 10.397 -13.639 17.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 N -0.276 5.276 3 C -0.124 4.124 4 C -0.077 4.077 5 C 0.017 3.983 6 N -0.150 5.150 7 C -0.070 4.070 8 C -0.213 4.213 9 C -0.038 4.038 10 C -0.199 4.199 11 N -0.185 5.185 12 C -0.211 4.211 13 C 0.036 3.964 14 C -0.513 4.513 15 H 0.102 0.898 16 C -0.178 4.178 17 N -0.441 5.441 18 Si 0.804 3.196 19 H -0.185 1.185 20 H -0.192 1.192 21 H -0.183 1.183 22 C -0.177 4.177 23 C -0.131 4.131 24 N -0.138 5.138 25 H 0.045 0.955 26 H 0.103 0.897 27 H 0.100 0.900 28 H 0.086 0.914 29 H 0.106 0.894 30 H 0.043 0.957 31 H 0.048 0.952 32 H 0.090 0.910 33 H 0.116 0.884 34 H 0.143 0.857 35 H 0.226 0.774 36 H 0.169 0.831 37 H 0.148 0.852 38 H 0.102 0.898 39 H 0.136 0.864 40 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -3.726 11.013 -14.943 18.933 hybrid contribution 0.981 -0.184 1.995 2.231 sum -2.746 10.829 -12.947 17.101 Atomic orbital electron populations 1.22612 0.85972 1.03498 1.01377 1.61954 1.09332 1.14810 1.41485 1.22438 1.01018 0.87715 1.01248 1.22191 1.00893 0.92619 0.91970 1.21895 1.00703 0.90000 0.85697 1.48640 1.05111 1.36079 1.25146 1.22883 0.99377 0.93578 0.91125 1.19026 0.93789 1.07148 1.01345 1.19015 0.94733 0.96001 0.94050 1.22191 0.94115 1.02769 1.00776 1.66912 1.38599 1.09452 1.03551 1.22588 0.89639 1.07327 1.01516 1.18778 0.93293 0.91919 0.92374 1.19786 1.02179 1.07824 1.21501 0.89812 1.26772 1.01855 0.94567 0.94644 1.69841 1.28613 1.08887 1.36712 0.85222 0.76222 0.78912 0.79236 1.18504 1.19204 1.18261 1.21674 0.98908 1.02082 0.95063 1.23985 0.98767 0.95517 0.94867 1.77095 0.97461 1.23621 1.15574 0.95543 0.89703 0.90018 0.91408 0.89426 0.95688 0.95180 0.90976 0.88401 0.85722 0.77374 0.83059 0.85178 0.89821 0.86367 0.80692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.15 9.32 127.69 1.19 1.35 16 2 N -0.55 -8.85 5.02 -948.84 -4.76 -13.61 16 3 C 0.02 0.33 9.57 127.69 1.22 1.55 16 4 C 0.05 1.04 5.14 86.30 0.44 1.48 16 5 C 0.14 2.63 6.42 86.38 0.55 3.18 16 6 N -0.37 -10.37 3.67 -347.22 -1.27 -11.64 16 7 C 0.08 2.31 10.84 83.81 0.91 3.22 16 8 C -0.20 -7.83 6.05 -20.33 -0.12 -7.96 16 9 C -0.03 -1.60 5.89 -19.99 -0.12 -1.72 16 10 C -0.04 -1.80 10.73 85.03 0.91 -0.88 16 11 N -0.48 -23.65 10.32 -192.79 -1.99 -25.64 16 12 C -0.05 -2.61 10.96 85.36 0.94 -1.68 16 13 C 0.04 2.20 5.59 -21.22 -0.12 2.08 16 14 C -0.48 -25.51 9.08 23.47 0.21 -25.29 16 15 H 0.08 4.21 7.90 -2.91 -0.02 4.18 16 16 C 0.04 1.86 5.18 85.25 0.44 2.30 16 17 N -0.82 -41.28 10.92 21.82 0.24 -41.04 16 18 Si 0.98 37.09 29.59 68.60 2.03 39.12 16 19 H -0.26 -9.68 7.11 99.48 0.71 -8.97 16 20 H -0.27 -9.57 7.11 99.48 0.71 -8.86 16 21 H -0.26 -9.44 7.11 99.48 0.71 -8.73 16 22 C -0.15 -7.86 8.32 23.13 0.19 -7.67 16 23 C 0.05 2.10 11.44 85.50 0.98 3.08 16 24 N -0.32 -11.02 12.38 -56.46 -0.70 -11.72 16 25 H 0.03 0.33 8.14 -2.39 -0.02 0.31 16 26 H 0.08 0.78 8.12 -2.39 -0.02 0.76 16 27 H 0.08 0.78 6.47 -2.38 -0.02 0.77 16 28 H 0.07 0.98 8.12 -2.39 -0.02 0.96 16 29 H 0.09 0.92 8.12 -2.38 -0.02 0.90 16 30 H 0.02 0.36 8.14 -2.39 -0.02 0.34 16 31 H 0.03 0.66 8.12 -2.39 -0.02 0.64 16 32 H 0.07 1.70 8.06 -2.39 -0.02 1.68 16 33 H 0.10 1.81 8.14 -2.39 -0.02 1.79 16 34 H 0.12 1.62 6.48 -2.39 -0.02 1.60 16 35 H 0.21 4.52 7.29 -2.91 -0.02 4.49 16 36 H 0.15 5.49 7.01 -2.91 -0.02 5.47 16 37 H 0.13 6.32 8.06 -2.92 -0.02 6.30 16 38 H 0.29 13.33 8.30 -92.71 -0.77 12.56 16 39 H 0.12 6.29 5.29 -2.91 -0.02 6.27 16 40 H 0.18 6.81 7.40 -2.91 -0.02 6.79 16 Total: -1.00 -64.47 336.93 2.22 -62.25 By element: Atomic # 1 Polarization: 28.21 SS G_CDS: 1.04 Total: 29.25 kcal Atomic # 6 Polarization: -34.60 SS G_CDS: 7.63 Total: -26.97 kcal Atomic # 7 Polarization: -95.17 SS G_CDS: -8.49 Total: -103.65 kcal Atomic # 14 Polarization: 37.09 SS G_CDS: 2.03 Total: 39.12 kcal Total: -64.47 2.22 -62.25 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206352920.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.997 kcal (2) G-P(sol) polarization free energy of solvation -64.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.250 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds