Wall clock time and date at job start Tue Mar 31 2020 05:56:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.45205 * 109.46989 * 2 1 4 4 C 1.34227 * 116.99474 * 180.02562 * 3 2 1 5 5 O 1.20822 * 120.00513 * 359.97438 * 4 3 2 6 6 C 1.50700 * 119.99465 * 180.27819 * 4 3 2 7 7 C 1.53006 * 109.47281 * 179.71985 * 6 4 3 8 8 H 1.09000 * 109.46683 * 54.48629 * 7 6 4 9 9 C 1.50697 * 109.47146 * 174.48364 * 7 6 4 10 10 H 1.08007 * 119.99674 * 94.99369 * 9 7 6 11 11 C 1.37873 * 120.00557 * 274.99442 * 9 7 6 12 12 N 1.31516 * 120.00502 * 185.02243 * 11 9 7 13 13 Si 1.86806 * 119.99898 * 5.02540 * 11 9 7 14 14 H 1.48496 * 109.47354 * 84.82218 * 13 11 9 15 15 H 1.48499 * 109.46893 * 204.82992 * 13 11 9 16 16 H 1.48500 * 109.46819 * 324.82502 * 13 11 9 17 17 O 1.42891 * 109.47060 * 294.48736 * 7 6 4 18 18 C 1.42897 * 114.00143 * 149.99710 * 17 7 6 19 19 C 1.53001 * 109.47507 * 180.02562 * 18 17 7 20 20 C 1.53175 * 109.54226 * 294.55547 * 19 18 17 21 21 C 1.53094 * 109.16344 * 183.14917 * 20 19 18 22 22 O 1.42904 * 109.41351 * 57.60865 * 21 20 19 23 23 C 1.42897 * 114.09806 * 298.84242 * 22 21 20 24 24 C 1.53091 * 109.41501 * 61.15829 * 23 22 21 25 25 H 1.09008 * 109.46971 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47130 * 299.99784 * 1 2 3 27 27 H 1.09000 * 109.47266 * 59.99961 * 1 2 3 28 28 H 1.08997 * 109.47130 * 240.00216 * 2 1 3 29 29 H 1.09000 * 109.47266 * 120.00039 * 2 1 3 30 30 H 1.09001 * 109.47059 * 299.71771 * 6 4 3 31 31 H 1.09000 * 109.47599 * 59.71867 * 6 4 3 32 32 H 0.96993 * 120.00297 * 179.97438 * 12 11 9 33 33 H 1.09007 * 109.46843 * 300.00270 * 18 17 7 34 34 H 1.09003 * 109.47198 * 59.99670 * 18 17 7 35 35 H 1.09007 * 109.54231 * 54.82523 * 19 18 17 36 36 H 1.08996 * 109.52494 * 303.05825 * 20 19 18 37 37 H 1.09004 * 109.51876 * 63.24783 * 20 19 18 38 38 H 1.09008 * 109.47929 * 297.62640 * 21 20 19 39 39 H 1.08996 * 109.48254 * 177.59473 * 21 20 19 40 40 H 1.08996 * 109.48123 * 301.17138 * 23 22 21 41 41 H 1.09007 * 109.49018 * 181.14425 * 23 22 21 42 42 H 1.09006 * 109.52381 * 182.48561 * 24 23 22 43 43 H 1.09001 * 109.52392 * 62.29714 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5448 -0.0005 5 8 4.0807 0.5866 -0.0005 6 6 3.9207 2.9374 0.0058 7 6 5.4486 2.8573 0.0108 8 1 5.7831 2.2448 -0.8265 9 6 6.0247 4.2438 -0.1195 10 1 6.3078 4.7961 0.7644 11 6 6.1903 4.8071 -1.3669 12 7 6.7832 5.9748 -1.4877 13 14 5.5725 3.9119 -2.8856 14 1 4.1342 4.2190 -3.0905 15 1 6.3476 4.3563 -4.0717 16 1 5.7448 2.4484 -2.7017 17 8 5.8908 2.2710 1.2366 18 6 7.1143 1.5414 1.1238 19 6 7.4895 0.9604 2.4885 20 6 7.7983 2.1007 3.4635 21 6 8.2484 1.5095 4.8020 22 8 9.3880 0.6731 4.5927 23 6 9.1455 -0.4374 3.7267 24 6 8.7316 0.0756 2.3450 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 3.5878 3.4722 -0.8838 31 1 3.5817 3.4668 0.8962 32 1 6.9001 6.3710 -2.3653 33 1 6.9889 0.7305 0.4061 34 1 7.9055 2.2092 0.7828 35 1 6.6604 0.3655 2.8720 36 1 8.5936 2.7241 3.0548 37 1 6.9028 2.7036 3.6143 38 1 7.4378 0.9192 5.2295 39 1 8.5104 2.3166 5.4861 40 1 8.3469 -1.0532 4.1402 41 1 10.0540 -1.0331 3.6361 42 1 8.5035 -0.7698 1.6958 43 1 9.5458 0.6580 1.9137 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001222633902.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:29 Heat of formation + Delta-G solvation = -201.106663 kcal Electronic energy + Delta-G solvation = -23766.427910 eV Core-core repulsion = 20197.291258 eV Total energy + Delta-G solvation = -3569.136652 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 286.166 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.97932 -39.20942 -37.20136 -35.99956 -34.09957 -32.66634 -31.77092 -30.92722 -30.60417 -26.86142 -26.28278 -23.37272 -23.21858 -22.31735 -21.41192 -20.01931 -19.64446 -17.54287 -16.87799 -16.40249 -16.02255 -15.91868 -15.72901 -15.53721 -14.82448 -14.52902 -14.13035 -13.93566 -13.76704 -13.28209 -13.06678 -12.80241 -12.58297 -12.52326 -12.18934 -12.01347 -11.73047 -11.56848 -11.43365 -11.31535 -11.13663 -10.89890 -10.58642 -10.52068 -10.29684 -10.24019 -10.03027 -9.83768 -9.75902 -9.48185 -9.28584 -8.79363 -8.24301 -6.26218 -4.29295 2.79506 3.08510 3.15434 3.23423 3.25408 3.99963 4.22252 4.52185 4.96107 4.98956 5.00658 5.04755 5.08708 5.21342 5.23970 5.25827 5.32318 5.43811 5.56344 5.67223 5.75320 5.77338 5.80412 5.92361 5.94688 6.00805 6.08824 6.12216 6.16231 6.26438 6.37816 6.43011 6.52040 6.60634 6.75921 6.80975 7.04750 7.31569 7.43695 8.13825 8.30694 8.47243 8.88610 9.36212 10.86033 Molecular weight = 286.17amu Principal moments of inertia in cm(-1) A = 0.010776 B = 0.005976 C = 0.004219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2597.826085 B = 4683.898211 C = 6635.725411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.059 3.941 3 O -0.367 6.367 4 C 0.457 3.543 5 O -0.506 6.506 6 C -0.110 4.110 7 C 0.198 3.802 8 H 0.033 0.967 9 C -0.535 4.535 10 H 0.085 0.915 11 C 0.080 3.920 12 N -0.885 5.885 13 Si 0.855 3.145 14 H -0.269 1.269 15 H -0.281 1.281 16 H -0.260 1.260 17 O -0.384 6.384 18 C 0.084 3.916 19 C -0.084 4.084 20 C -0.144 4.144 21 C 0.061 3.939 22 O -0.388 6.388 23 C 0.065 3.935 24 C -0.150 4.150 25 H 0.074 0.926 26 H 0.065 0.935 27 H 0.065 0.935 28 H 0.064 0.936 29 H 0.065 0.935 30 H 0.102 0.898 31 H 0.108 0.892 32 H 0.268 0.732 33 H 0.036 0.964 34 H 0.049 0.951 35 H 0.071 0.929 36 H 0.072 0.928 37 H 0.083 0.917 38 H 0.046 0.954 39 H 0.091 0.909 40 H 0.047 0.953 41 H 0.090 0.910 42 H 0.071 0.929 43 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.692 -11.840 5.909 14.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.016 4.016 3 O -0.286 6.286 4 C 0.300 3.700 5 O -0.393 6.393 6 C -0.148 4.148 7 C 0.140 3.860 8 H 0.051 0.949 9 C -0.572 4.572 10 H 0.103 0.897 11 C -0.124 4.124 12 N -0.522 5.522 13 Si 0.682 3.318 14 H -0.194 1.194 15 H -0.207 1.207 16 H -0.185 1.185 17 O -0.303 6.303 18 C 0.007 3.993 19 C -0.103 4.103 20 C -0.182 4.182 21 C -0.016 4.016 22 O -0.307 6.307 23 C -0.012 4.012 24 C -0.188 4.188 25 H 0.093 0.907 26 H 0.084 0.916 27 H 0.084 0.916 28 H 0.082 0.918 29 H 0.084 0.916 30 H 0.120 0.880 31 H 0.126 0.874 32 H 0.078 0.922 33 H 0.054 0.946 34 H 0.067 0.933 35 H 0.089 0.911 36 H 0.091 0.909 37 H 0.102 0.898 38 H 0.064 0.936 39 H 0.109 0.891 40 H 0.065 0.935 41 H 0.108 0.892 42 H 0.090 0.910 43 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -4.346 -11.949 6.026 14.070 hybrid contribution -0.555 -0.539 -1.433 1.629 sum -4.902 -12.488 4.593 14.180 Atomic orbital electron populations 1.21786 0.93155 1.02454 1.03386 1.22890 0.94971 0.81566 1.02133 1.86583 1.26014 1.31287 1.84678 1.24715 0.79590 0.94106 0.71556 1.90582 1.60216 1.43350 1.45171 1.22283 0.98595 0.88577 1.05333 1.19964 0.87358 0.94131 0.84520 0.94894 1.21417 1.41909 0.99127 0.94794 0.89685 1.24959 0.94069 0.94803 0.98543 1.69882 1.40991 1.16874 1.24403 0.87219 0.79858 0.81206 0.83523 1.19394 1.20714 1.18476 1.87620 1.38972 1.69746 1.33973 1.22159 0.88146 0.94202 0.94768 1.21125 0.96726 0.96297 0.96154 1.22152 1.02833 0.98294 0.94933 1.22643 0.88190 0.93627 0.97140 1.87884 1.35964 1.39785 1.67064 1.22514 1.00880 0.88335 0.89486 1.22181 0.98592 1.00219 0.97834 0.90722 0.91574 0.91638 0.91789 0.91624 0.87983 0.87424 0.92222 0.94592 0.93281 0.91063 0.90945 0.89812 0.93596 0.89121 0.93508 0.89212 0.90990 0.90778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.49 10.29 37.16 0.38 -1.11 16 2 C 0.06 0.80 6.19 37.16 0.23 1.03 16 3 O -0.37 -6.34 10.22 -39.25 -0.40 -6.75 16 4 C 0.46 9.14 7.84 36.01 0.28 9.42 16 5 O -0.51 -11.08 15.18 -23.92 -0.36 -11.44 16 6 C -0.11 -2.30 5.26 -27.88 -0.15 -2.45 16 7 C 0.20 4.71 1.22 -27.88 -0.03 4.68 16 8 H 0.03 0.83 5.17 -51.93 -0.27 0.57 16 9 C -0.53 -14.48 9.21 -34.44 -0.32 -14.79 16 10 H 0.09 2.53 8.06 -52.48 -0.42 2.11 16 11 C 0.08 2.21 5.47 -17.82 -0.10 2.11 16 12 N -0.88 -25.80 13.96 55.43 0.77 -25.03 16 13 Si 0.86 20.31 25.90 -169.99 -4.40 15.91 16 14 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 15 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 16 H -0.26 -6.13 6.14 56.52 0.35 -5.78 16 17 O -0.38 -8.70 8.86 -49.15 -0.44 -9.13 16 18 C 0.08 1.70 5.12 37.16 0.19 1.89 16 19 C -0.08 -1.38 2.51 -90.44 -0.23 -1.61 16 20 C -0.14 -2.29 5.29 -26.59 -0.14 -2.43 16 21 C 0.06 0.82 6.84 37.21 0.25 1.07 16 22 O -0.39 -5.61 10.77 -35.23 -0.38 -5.99 16 23 C 0.06 0.80 6.84 37.20 0.25 1.05 16 24 C -0.15 -2.07 5.42 -26.59 -0.14 -2.21 16 25 H 0.07 0.57 8.14 -51.92 -0.42 0.14 16 26 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 27 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 28 H 0.06 0.86 8.13 -51.93 -0.42 0.44 16 29 H 0.07 0.88 8.13 -51.93 -0.42 0.46 16 30 H 0.10 2.10 6.40 -51.93 -0.33 1.77 16 31 H 0.11 2.11 8.14 -51.93 -0.42 1.69 16 32 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 33 H 0.04 0.73 8.09 -51.93 -0.42 0.31 16 34 H 0.05 1.05 8.14 -51.93 -0.42 0.62 16 35 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 36 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 37 H 0.08 1.41 7.93 -51.93 -0.41 1.00 16 38 H 0.05 0.57 8.14 -51.92 -0.42 0.15 16 39 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 40 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.09 0.93 8.14 -51.92 -0.42 0.51 16 42 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 43 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 LS Contribution 348.81 15.07 5.26 5.26 Total: -1.00 -30.77 348.81 -6.85 -37.62 By element: Atomic # 1 Polarization: 10.29 SS G_CDS: -7.39 Total: 2.91 kcal Atomic # 6 Polarization: -3.85 SS G_CDS: 0.49 Total: -3.36 kcal Atomic # 7 Polarization: -25.80 SS G_CDS: 0.77 Total: -25.03 kcal Atomic # 8 Polarization: -31.73 SS G_CDS: -1.58 Total: -33.31 kcal Atomic # 14 Polarization: 20.31 SS G_CDS: -4.40 Total: 15.91 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -30.77 -6.85 -37.62 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001222633902.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -163.484 kcal (2) G-P(sol) polarization free energy of solvation -30.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -194.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.623 kcal (6) G-S(sol) free energy of system = (1) + (5) -201.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds