Wall clock time and date at job start Tue Mar 31 2020 05:56:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.45205 * 109.46989 * 2 1 4 4 C 1.34227 * 116.99474 * 180.02562 * 3 2 1 5 5 O 1.20822 * 120.00513 * 359.97438 * 4 3 2 6 6 C 1.50700 * 119.99465 * 180.27819 * 4 3 2 7 7 C 1.53006 * 109.47281 * 179.71985 * 6 4 3 8 8 H 1.09000 * 109.46683 * 54.48629 * 7 6 4 9 9 C 1.50697 * 109.47146 * 174.48364 * 7 6 4 10 10 H 1.08007 * 119.99674 * 94.99369 * 9 7 6 11 11 C 1.37873 * 120.00557 * 274.99442 * 9 7 6 12 12 N 1.31516 * 120.00502 * 185.02243 * 11 9 7 13 13 Si 1.86806 * 119.99898 * 5.02540 * 11 9 7 14 14 H 1.48496 * 109.47354 * 84.82218 * 13 11 9 15 15 H 1.48499 * 109.46893 * 204.82992 * 13 11 9 16 16 H 1.48500 * 109.46819 * 324.82502 * 13 11 9 17 17 O 1.42891 * 109.47060 * 294.48736 * 7 6 4 18 18 C 1.42897 * 114.00143 * 149.99710 * 17 7 6 19 19 C 1.53001 * 109.47507 * 180.02562 * 18 17 7 20 20 C 1.53175 * 109.54226 * 294.55547 * 19 18 17 21 21 C 1.53094 * 109.16344 * 183.14917 * 20 19 18 22 22 O 1.42904 * 109.41351 * 57.60865 * 21 20 19 23 23 C 1.42897 * 114.09806 * 298.84242 * 22 21 20 24 24 C 1.53091 * 109.41501 * 61.15829 * 23 22 21 25 25 H 1.09008 * 109.46971 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47130 * 299.99784 * 1 2 3 27 27 H 1.09000 * 109.47266 * 59.99961 * 1 2 3 28 28 H 1.08997 * 109.47130 * 240.00216 * 2 1 3 29 29 H 1.09000 * 109.47266 * 120.00039 * 2 1 3 30 30 H 1.09001 * 109.47059 * 299.71771 * 6 4 3 31 31 H 1.09000 * 109.47599 * 59.71867 * 6 4 3 32 32 H 0.96993 * 120.00297 * 179.97438 * 12 11 9 33 33 H 1.09007 * 109.46843 * 300.00270 * 18 17 7 34 34 H 1.09003 * 109.47198 * 59.99670 * 18 17 7 35 35 H 1.09007 * 109.54231 * 54.82523 * 19 18 17 36 36 H 1.08996 * 109.52494 * 303.05825 * 20 19 18 37 37 H 1.09004 * 109.51876 * 63.24783 * 20 19 18 38 38 H 1.09008 * 109.47929 * 297.62640 * 21 20 19 39 39 H 1.08996 * 109.48254 * 177.59473 * 21 20 19 40 40 H 1.08996 * 109.48123 * 301.17138 * 23 22 21 41 41 H 1.09007 * 109.49018 * 181.14425 * 23 22 21 42 42 H 1.09006 * 109.52381 * 182.48561 * 24 23 22 43 43 H 1.09001 * 109.52392 * 62.29714 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5448 -0.0005 5 8 4.0807 0.5866 -0.0005 6 6 3.9207 2.9374 0.0058 7 6 5.4486 2.8573 0.0108 8 1 5.7831 2.2448 -0.8265 9 6 6.0247 4.2438 -0.1195 10 1 6.3078 4.7961 0.7644 11 6 6.1903 4.8071 -1.3669 12 7 6.7832 5.9748 -1.4877 13 14 5.5725 3.9119 -2.8856 14 1 4.1342 4.2190 -3.0905 15 1 6.3476 4.3563 -4.0717 16 1 5.7448 2.4484 -2.7017 17 8 5.8908 2.2710 1.2366 18 6 7.1143 1.5414 1.1238 19 6 7.4895 0.9604 2.4885 20 6 7.7983 2.1007 3.4635 21 6 8.2484 1.5095 4.8020 22 8 9.3880 0.6731 4.5927 23 6 9.1455 -0.4374 3.7267 24 6 8.7316 0.0756 2.3450 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 3.5878 3.4722 -0.8838 31 1 3.5817 3.4668 0.8962 32 1 6.9001 6.3710 -2.3653 33 1 6.9889 0.7305 0.4061 34 1 7.9055 2.2092 0.7828 35 1 6.6604 0.3655 2.8720 36 1 8.5936 2.7241 3.0548 37 1 6.9028 2.7036 3.6143 38 1 7.4378 0.9192 5.2295 39 1 8.5104 2.3166 5.4861 40 1 8.3469 -1.0532 4.1402 41 1 10.0540 -1.0331 3.6361 42 1 8.5035 -0.7698 1.6958 43 1 9.5458 0.6580 1.9137 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001222633902.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:28 Heat of formation + Delta-G solvation = -220.088977 kcal Electronic energy + Delta-G solvation = -23767.251045 eV Core-core repulsion = 20197.291258 eV Total energy + Delta-G solvation = -3569.959787 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 286.166 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.50192 -40.40606 -38.85113 -37.49173 -35.62699 -34.56092 -33.04569 -32.18294 -31.98916 -28.40180 -28.07953 -24.59348 -24.40773 -23.61150 -23.02246 -21.63464 -20.95646 -19.44377 -18.54109 -17.97854 -17.42556 -17.20813 -17.06422 -16.88929 -16.41269 -15.81389 -15.63839 -15.36311 -15.23584 -14.68312 -14.63416 -14.35110 -13.98194 -13.64577 -13.63003 -13.25590 -13.22420 -13.08489 -12.86032 -12.64183 -12.48919 -12.32762 -12.22923 -11.96754 -11.86750 -11.54002 -11.50705 -11.40401 -11.36776 -11.17166 -10.89850 -10.46292 -10.13924 -8.40477 -6.49232 1.21229 1.24114 1.29870 1.36561 1.73229 2.21601 2.85965 2.95398 3.02819 3.73512 3.83056 3.89608 3.96050 4.00559 4.08906 4.10788 4.30056 4.30709 4.34408 4.37349 4.43615 4.49250 4.66471 4.67587 4.68761 4.79464 4.82171 4.85537 4.91348 4.92500 4.95814 5.10512 5.14113 5.19675 5.26431 5.36782 5.41904 5.48278 6.07167 6.26610 6.47829 6.70886 6.79772 7.21501 8.75656 Molecular weight = 286.17amu Principal moments of inertia in cm(-1) A = 0.010776 B = 0.005976 C = 0.004219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2597.826085 B = 4683.898211 C = 6635.725411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.048 3.952 3 O -0.365 6.365 4 C 0.465 3.535 5 O -0.528 6.528 6 C -0.110 4.110 7 C 0.204 3.796 8 H 0.022 0.978 9 C -0.540 4.540 10 H 0.042 0.958 11 C 0.032 3.968 12 N -0.930 5.930 13 Si 0.914 3.086 14 H -0.243 1.243 15 H -0.277 1.277 16 H -0.257 1.257 17 O -0.391 6.391 18 C 0.082 3.918 19 C -0.079 4.079 20 C -0.143 4.143 21 C 0.067 3.933 22 O -0.402 6.402 23 C 0.064 3.936 24 C -0.147 4.147 25 H 0.103 0.897 26 H 0.069 0.931 27 H 0.068 0.932 28 H 0.065 0.935 29 H 0.067 0.933 30 H 0.109 0.891 31 H 0.118 0.882 32 H 0.272 0.728 33 H 0.035 0.965 34 H 0.025 0.975 35 H 0.075 0.925 36 H 0.052 0.948 37 H 0.067 0.933 38 H 0.062 0.938 39 H 0.105 0.895 40 H 0.062 0.938 41 H 0.114 0.886 42 H 0.086 0.914 43 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.225 -14.206 5.946 16.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.025 4.025 3 O -0.283 6.283 4 C 0.309 3.691 5 O -0.417 6.417 6 C -0.148 4.148 7 C 0.146 3.854 8 H 0.039 0.961 9 C -0.578 4.578 10 H 0.060 0.940 11 C -0.168 4.168 12 N -0.568 5.568 13 Si 0.737 3.263 14 H -0.167 1.167 15 H -0.202 1.202 16 H -0.182 1.182 17 O -0.311 6.311 18 C 0.005 3.995 19 C -0.098 4.098 20 C -0.181 4.181 21 C -0.010 4.010 22 O -0.321 6.321 23 C -0.012 4.012 24 C -0.184 4.184 25 H 0.122 0.878 26 H 0.088 0.912 27 H 0.087 0.913 28 H 0.084 0.916 29 H 0.085 0.915 30 H 0.127 0.873 31 H 0.136 0.864 32 H 0.081 0.919 33 H 0.053 0.947 34 H 0.044 0.956 35 H 0.094 0.906 36 H 0.071 0.929 37 H 0.085 0.915 38 H 0.080 0.920 39 H 0.123 0.877 40 H 0.081 0.919 41 H 0.132 0.868 42 H 0.105 0.895 43 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -5.909 -14.321 6.078 16.642 hybrid contribution -0.083 0.180 -1.384 1.398 sum -5.992 -14.142 4.694 16.060 Atomic orbital electron populations 1.21819 0.90023 1.04459 1.03721 1.23318 0.97379 0.79471 1.02357 1.86547 1.23968 1.33803 1.83953 1.24215 0.80541 0.93083 0.71218 1.90572 1.61015 1.43800 1.46357 1.22018 0.96545 0.89988 1.06240 1.19760 0.89234 0.91790 0.84611 0.96056 1.21499 1.42318 1.00394 0.93550 0.93986 1.25697 0.94031 0.95435 1.01621 1.70012 1.42633 1.18731 1.25457 0.86277 0.80701 0.79882 0.79449 1.16705 1.20238 1.18206 1.87617 1.39963 1.69934 1.33538 1.22314 0.86497 0.93366 0.97319 1.21121 0.98188 0.96685 0.93798 1.22103 1.01448 0.97924 0.96594 1.22635 0.88598 0.94223 0.95523 1.87876 1.36420 1.40409 1.67386 1.22691 1.02692 0.87950 0.87914 1.22184 0.96747 0.99998 0.99510 0.87846 0.91214 0.91333 0.91634 0.91466 0.87332 0.86428 0.91897 0.94727 0.95620 0.90632 0.92927 0.91461 0.91956 0.87741 0.91925 0.86771 0.89507 0.91737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.37 10.29 71.98 0.74 -1.63 16 2 C 0.05 1.19 6.19 71.98 0.45 1.64 16 3 O -0.37 -11.87 10.22 -51.39 -0.53 -12.39 16 4 C 0.47 18.03 7.84 71.24 0.56 18.59 16 5 O -0.53 -22.57 15.18 26.93 0.41 -22.16 16 6 C -0.11 -4.56 5.26 29.85 0.16 -4.40 16 7 C 0.20 9.87 1.22 29.85 0.04 9.91 16 8 H 0.02 1.10 5.17 -2.39 -0.01 1.08 16 9 C -0.54 -30.39 9.21 25.60 0.24 -30.15 16 10 H 0.04 2.66 8.06 -2.91 -0.02 2.64 16 11 C 0.03 1.82 5.47 84.65 0.46 2.28 16 12 N -0.93 -55.87 13.96 21.45 0.30 -55.57 16 13 Si 0.91 41.82 25.90 68.60 1.78 43.60 16 14 H -0.24 -10.12 7.11 99.48 0.71 -9.41 16 15 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 16 H -0.26 -11.62 6.14 99.48 0.61 -11.01 16 17 O -0.39 -18.19 8.86 -135.67 -1.20 -19.40 16 18 C 0.08 3.39 5.12 71.98 0.37 3.76 16 19 C -0.08 -2.59 2.51 -10.68 -0.03 -2.62 16 20 C -0.14 -4.62 5.29 30.68 0.16 -4.45 16 21 C 0.07 1.71 6.84 72.01 0.49 2.21 16 22 O -0.40 -10.87 10.77 -148.98 -1.60 -12.47 16 23 C 0.06 1.42 6.84 72.01 0.49 1.91 16 24 C -0.15 -3.86 5.42 30.68 0.17 -3.70 16 25 H 0.10 1.16 8.14 -2.38 -0.02 1.14 16 26 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 27 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 28 H 0.07 1.62 8.13 -2.39 -0.02 1.60 16 29 H 0.07 1.65 8.13 -2.39 -0.02 1.63 16 30 H 0.11 4.33 6.40 -2.39 -0.02 4.31 16 31 H 0.12 4.59 8.14 -2.39 -0.02 4.57 16 32 H 0.27 15.17 8.31 -92.71 -0.77 14.40 16 33 H 0.03 1.42 8.09 -2.38 -0.02 1.41 16 34 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16 35 H 0.08 2.42 8.14 -2.38 -0.02 2.40 16 36 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 37 H 0.07 2.36 7.93 -2.39 -0.02 2.34 16 38 H 0.06 1.42 8.14 -2.38 -0.02 1.40 16 39 H 0.10 2.38 8.14 -2.39 -0.02 2.36 16 40 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 41 H 0.11 2.00 8.14 -2.38 -0.02 1.98 16 42 H 0.09 2.03 8.14 -2.38 -0.02 2.01 16 43 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 Total: -1.00 -68.09 348.81 4.32 -63.77 By element: Atomic # 1 Polarization: 20.42 SS G_CDS: 0.87 Total: 21.30 kcal Atomic # 6 Polarization: -10.97 SS G_CDS: 4.29 Total: -6.67 kcal Atomic # 7 Polarization: -55.87 SS G_CDS: 0.30 Total: -55.57 kcal Atomic # 8 Polarization: -63.50 SS G_CDS: -2.92 Total: -66.42 kcal Atomic # 14 Polarization: 41.82 SS G_CDS: 1.78 Total: 43.60 kcal Total: -68.09 4.32 -63.77 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001222633902.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -156.322 kcal (2) G-P(sol) polarization free energy of solvation -68.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -224.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.767 kcal (6) G-S(sol) free energy of system = (1) + (5) -220.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds