Wall clock time and date at job start Tue Mar 31 2020 06:05:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35593 * 116.99725 * 2 1 4 4 C 1.38547 * 120.06189 * 0.02562 * 3 2 1 5 5 C 1.37971 * 120.32795 * 179.72082 * 4 3 2 6 6 C 1.40132 * 120.45202 * 0.51708 * 5 4 3 7 7 C 1.47778 * 119.94263 * 179.76285 * 6 5 4 8 8 C 1.31141 * 118.07184 * 244.70428 * 7 6 5 9 9 C 1.50093 * 123.84385 * 180.45624 * 8 7 6 10 10 C 1.53013 * 110.13810 * 342.83555 * 9 8 7 11 11 C 1.53001 * 109.63244 * 289.98720 * 10 9 8 12 12 C 1.52995 * 109.79962 * 169.49136 * 10 9 8 13 13 C 1.53367 * 108.49471 * 49.68839 * 10 9 8 14 14 C 1.50086 * 118.07762 * 64.72478 * 7 6 5 15 15 C 1.38834 * 120.11426 * 359.48502 * 6 5 4 16 16 C 1.40473 * 119.66683 * 0.25690 * 15 6 5 17 17 C 1.41192 * 120.21627 * 179.97438 * 16 15 6 18 18 H 1.08006 * 119.99586 * 204.70621 * 17 16 15 19 19 C 1.39894 * 120.00144 * 24.70264 * 17 16 15 20 20 N 1.30878 * 120.00078 * 17.77821 * 19 17 16 21 21 Si 1.86809 * 119.99735 * 197.76856 * 19 17 16 22 22 H 1.48496 * 109.47067 * 0.02562 * 21 19 17 23 23 H 1.48499 * 109.46541 * 120.00242 * 21 19 17 24 24 H 1.48497 * 109.47168 * 240.00129 * 21 19 17 25 25 H 1.08997 * 109.47708 * 60.00064 * 1 2 3 26 26 H 1.09002 * 109.47111 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.46961 * 299.99704 * 1 2 3 28 28 H 1.07991 * 119.83770 * 0.02562 * 4 3 2 29 29 H 1.07996 * 119.77769 * 180.28346 * 5 4 3 30 30 H 1.07993 * 118.08050 * 0.45333 * 8 7 6 31 31 H 1.09000 * 109.36031 * 222.63590 * 9 8 7 32 32 H 1.08998 * 109.36514 * 103.03730 * 9 8 7 33 33 H 1.09003 * 109.47254 * 178.99881 * 11 10 9 34 34 H 1.08998 * 109.47177 * 59.00441 * 11 10 9 35 35 H 1.09000 * 109.47127 * 299.00329 * 11 10 9 36 36 H 1.09003 * 109.47151 * 180.50575 * 12 10 9 37 37 H 1.09006 * 109.47105 * 300.49919 * 12 10 9 38 38 H 1.09000 * 109.47592 * 60.49916 * 12 10 9 39 39 H 1.08999 * 109.63440 * 51.78573 * 13 10 9 40 40 H 1.08996 * 109.63622 * 172.18495 * 13 10 9 41 41 H 1.09000 * 109.35754 * 42.61340 * 14 7 6 42 42 H 1.08997 * 109.25200 * 282.94975 * 14 7 6 43 43 H 1.08000 * 120.16207 * 180.23343 * 15 6 5 44 44 H 0.97005 * 119.99694 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0445 1.2082 0.0000 4 6 1.2911 2.3709 0.0005 5 6 1.9117 3.6032 0.0063 6 6 3.3101 3.6941 0.0009 7 6 3.9630 5.0199 0.0019 8 6 4.6749 5.3579 -1.0463 9 6 5.4001 6.6655 -1.1779 10 6 4.8582 7.6730 -0.1617 11 6 3.4410 8.0914 -0.5582 12 6 5.7648 8.9047 -0.1192 13 6 4.8312 7.0050 1.2186 14 6 3.7728 5.9000 1.2026 15 6 4.0832 2.5409 0.0003 16 6 3.4565 1.2838 -0.0002 17 6 4.2314 0.1035 -0.0013 18 1 3.8172 -0.8140 -0.3927 19 6 5.5356 0.1225 0.5044 20 7 5.9219 1.1021 1.2816 21 14 6.7257 -1.2505 0.0705 22 1 6.0490 -2.2300 -0.8171 23 1 7.9046 -0.6806 -0.6298 24 1 7.1695 -1.9319 1.3130 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8901 28 1 0.2128 2.3124 0.0014 29 1 1.3158 4.5038 0.0113 30 1 4.7435 4.6543 -1.8627 31 1 5.2591 7.0571 -2.1853 32 1 6.4637 6.5084 -0.9990 33 1 3.0509 8.7953 0.1769 34 1 2.7990 7.2112 -0.5945 35 1 3.4632 8.5656 -1.5393 36 1 5.3790 9.6146 0.6125 37 1 6.7736 8.6037 0.1635 38 1 5.7877 9.3732 -1.1030 39 1 5.8081 6.5732 1.4358 40 1 4.5808 7.7450 1.9787 41 1 3.8629 5.3002 2.1082 42 1 2.7809 6.3503 1.1646 43 1 5.1609 2.6102 -0.0001 44 1 6.8261 1.1151 1.6325 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242328794.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:41 Heat of formation + Delta-G solvation = -31.214294 kcal Electronic energy + Delta-G solvation = -22784.584727 eV Core-core repulsion = 19665.957176 eV Total energy + Delta-G solvation = -3118.627551 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 286.167 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.36492 -38.46141 -36.18233 -33.94404 -32.72302 -30.44784 -29.81831 -28.70479 -27.17385 -26.66544 -25.56729 -24.80753 -22.79582 -20.89181 -20.76067 -19.26377 -17.45985 -16.63923 -16.25542 -15.44511 -15.12630 -14.64521 -14.58193 -14.44664 -14.03270 -13.73828 -13.32445 -12.96928 -12.75916 -12.66852 -12.31277 -12.00977 -11.88621 -11.71454 -11.62716 -11.56916 -11.46033 -11.14850 -11.13289 -10.94559 -10.75556 -10.42804 -10.31663 -10.20422 -9.91351 -9.73089 -9.54791 -9.36757 -9.11001 -8.11698 -7.45887 -6.84779 -6.60987 -4.19831 2.59620 2.84864 3.11002 3.12886 3.19404 3.26377 4.00782 4.53686 4.63943 4.85702 4.96615 4.98911 5.48075 5.57193 5.62108 5.65715 5.69626 5.76579 5.78539 5.84042 5.88442 5.91866 5.93768 5.99541 6.01007 6.10652 6.17482 6.22489 6.26421 6.35459 6.35937 6.39609 6.49389 6.62205 6.69346 6.91014 7.14393 7.21508 7.34834 7.42671 7.66464 7.75940 7.79600 8.06421 8.25605 8.44678 8.74400 8.90107 9.10918 10.26526 Molecular weight = 286.17amu Principal moments of inertia in cm(-1) A = 0.014961 B = 0.005289 C = 0.004142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1871.080660 B = 5293.148964 C = 6759.173201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.313 6.313 3 C 0.013 3.987 4 C -0.180 4.180 5 C -0.194 4.194 6 C -0.074 4.074 7 C -0.045 4.045 8 C -0.176 4.176 9 C -0.069 4.069 10 C -0.066 4.066 11 C -0.141 4.141 12 C -0.139 4.139 13 C -0.106 4.106 14 C -0.078 4.078 15 C -0.127 4.127 16 C 0.095 3.905 17 C -0.447 4.447 18 H 0.082 0.918 19 C 0.074 3.926 20 N -0.796 5.796 21 Si 0.906 3.094 22 H -0.260 1.260 23 H -0.273 1.273 24 H -0.276 1.276 25 H 0.039 0.961 26 H 0.080 0.920 27 H 0.039 0.961 28 H 0.095 0.905 29 H 0.088 0.912 30 H 0.101 0.899 31 H 0.062 0.938 32 H 0.066 0.934 33 H 0.048 0.952 34 H 0.065 0.935 35 H 0.048 0.952 36 H 0.052 0.948 37 H 0.053 0.947 38 H 0.051 0.949 39 H 0.063 0.937 40 H 0.059 0.941 41 H 0.071 0.929 42 H 0.069 0.931 43 H 0.127 0.873 44 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.715 9.911 -1.602 10.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.227 6.227 3 C -0.031 4.031 4 C -0.199 4.199 5 C -0.214 4.214 6 C -0.075 4.075 7 C -0.045 4.045 8 C -0.194 4.194 9 C -0.106 4.106 10 C -0.066 4.066 11 C -0.199 4.199 12 C -0.197 4.197 13 C -0.144 4.144 14 C -0.115 4.115 15 C -0.147 4.147 16 C 0.092 3.908 17 C -0.477 4.477 18 H 0.100 0.900 19 C -0.143 4.143 20 N -0.422 5.422 21 Si 0.731 3.269 22 H -0.184 1.184 23 H -0.198 1.198 24 H -0.201 1.201 25 H 0.057 0.943 26 H 0.099 0.901 27 H 0.058 0.942 28 H 0.113 0.887 29 H 0.107 0.893 30 H 0.120 0.880 31 H 0.081 0.919 32 H 0.084 0.916 33 H 0.067 0.933 34 H 0.084 0.916 35 H 0.067 0.933 36 H 0.071 0.929 37 H 0.072 0.928 38 H 0.071 0.929 39 H 0.082 0.918 40 H 0.077 0.923 41 H 0.090 0.910 42 H 0.088 0.912 43 H 0.145 0.855 44 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -1.423 9.785 -1.460 9.996 hybrid contribution 0.223 -0.511 -0.074 0.563 sum -1.200 9.274 -1.534 9.477 Atomic orbital electron populations 1.22722 0.81858 1.01646 0.99872 1.85951 1.18125 1.28410 1.90208 1.19317 0.92376 0.82541 1.08903 1.20519 0.97261 0.92873 1.09223 1.20093 0.93020 0.95044 1.13253 1.18671 0.92761 0.91850 1.04181 1.19673 0.96731 0.93752 0.94324 1.22152 1.00964 0.97450 0.98838 1.20411 0.98937 0.93031 0.98235 1.20584 0.95550 0.94604 0.95854 1.21911 0.96246 1.01415 1.00291 1.21854 0.99318 0.97208 1.01271 1.21655 0.99718 0.97243 0.95761 1.20383 0.98598 0.95413 0.97063 1.21236 0.99304 0.89433 1.04686 1.16994 0.87266 0.94002 0.92505 1.19424 0.96584 0.96564 1.35110 0.90022 1.25865 0.98831 0.96816 0.92783 1.69855 1.18901 1.30804 1.22676 0.86294 0.80027 0.81373 0.79246 1.18405 1.19826 1.20101 0.94292 0.90104 0.94207 0.88686 0.89335 0.88047 0.91909 0.91607 0.93260 0.91573 0.93257 0.92937 0.92807 0.92942 0.91838 0.92268 0.91025 0.91247 0.85532 0.91082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.61 9.81 101.05 0.99 1.61 16 2 O -0.31 -7.40 9.76 -18.48 -0.18 -7.58 16 3 C 0.01 0.33 6.72 -38.27 -0.26 0.07 16 4 C -0.18 -4.11 9.01 -39.57 -0.36 -4.46 16 5 C -0.19 -4.35 9.72 -38.97 -0.38 -4.73 16 6 C -0.07 -1.71 5.10 -105.07 -0.54 -2.25 16 7 C -0.04 -0.86 4.57 -102.77 -0.47 -1.33 16 8 C -0.18 -3.15 8.94 -36.36 -0.33 -3.47 16 9 C -0.07 -0.99 4.88 -28.17 -0.14 -1.12 16 10 C -0.07 -0.84 0.79 -154.31 -0.12 -0.96 16 11 C -0.14 -1.76 7.79 37.16 0.29 -1.47 16 12 C -0.14 -1.48 8.49 37.15 0.32 -1.16 16 13 C -0.11 -1.48 4.94 -26.53 -0.13 -1.61 16 14 C -0.08 -1.29 5.12 -28.17 -0.14 -1.44 16 15 C -0.13 -3.29 8.28 -38.52 -0.32 -3.61 16 16 C 0.09 2.59 5.58 -106.73 -0.60 2.00 16 17 C -0.45 -12.27 8.71 -37.84 -0.33 -12.60 16 18 H 0.08 2.24 7.64 -52.48 -0.40 1.84 16 19 C 0.07 1.89 5.14 -17.34 -0.09 1.80 16 20 N -0.80 -20.84 10.97 55.54 0.61 -20.24 16 21 Si 0.91 19.24 29.60 -169.99 -5.03 14.20 16 22 H -0.26 -5.52 7.11 56.52 0.40 -5.11 16 23 H -0.27 -5.67 7.11 56.52 0.40 -5.26 16 24 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 25 H 0.04 0.63 7.66 -51.93 -0.40 0.23 16 26 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 27 H 0.04 0.65 7.65 -51.93 -0.40 0.26 16 28 H 0.10 1.90 6.27 -52.49 -0.33 1.57 16 29 H 0.09 1.78 8.06 -52.49 -0.42 1.36 16 30 H 0.10 1.94 7.94 -52.49 -0.42 1.53 16 31 H 0.06 0.82 8.12 -51.93 -0.42 0.40 16 32 H 0.07 0.92 8.11 -51.93 -0.42 0.50 16 33 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.07 0.94 5.68 -51.93 -0.30 0.64 16 35 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 38 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.06 0.93 8.12 -51.93 -0.42 0.51 16 40 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.07 1.29 8.14 -51.93 -0.42 0.86 16 42 H 0.07 1.08 6.91 -51.93 -0.36 0.72 16 43 H 0.13 3.42 6.17 -52.49 -0.32 3.10 16 44 H 0.28 6.64 8.30 -40.82 -0.34 6.30 16 LS Contribution 346.97 15.07 5.23 5.23 Total: -1.00 -28.34 346.97 -9.09 -37.43 By element: Atomic # 1 Polarization: 12.83 SS G_CDS: -7.12 Total: 5.70 kcal Atomic # 6 Polarization: -32.16 SS G_CDS: -2.59 Total: -34.75 kcal Atomic # 7 Polarization: -20.84 SS G_CDS: 0.61 Total: -20.24 kcal Atomic # 8 Polarization: -7.40 SS G_CDS: -0.18 Total: -7.58 kcal Atomic # 14 Polarization: 19.24 SS G_CDS: -5.03 Total: 14.20 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -28.34 -9.09 -37.43 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242328794.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.214 kcal (2) G-P(sol) polarization free energy of solvation -28.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.428 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds