Wall clock time and date at job start Tue Mar 31 2020 06:05:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35593 * 116.99725 * 2 1 4 4 C 1.38547 * 120.06189 * 0.02562 * 3 2 1 5 5 C 1.37971 * 120.32795 * 179.72082 * 4 3 2 6 6 C 1.40132 * 120.45202 * 0.51708 * 5 4 3 7 7 C 1.47778 * 119.94263 * 179.76285 * 6 5 4 8 8 C 1.31141 * 118.07184 * 244.70428 * 7 6 5 9 9 C 1.50093 * 123.84385 * 180.45624 * 8 7 6 10 10 C 1.53013 * 110.13810 * 342.83555 * 9 8 7 11 11 C 1.53001 * 109.63244 * 289.98720 * 10 9 8 12 12 C 1.52995 * 109.79962 * 169.49136 * 10 9 8 13 13 C 1.53367 * 108.49471 * 49.68839 * 10 9 8 14 14 C 1.50086 * 118.07762 * 64.72478 * 7 6 5 15 15 C 1.38834 * 120.11426 * 359.48502 * 6 5 4 16 16 C 1.40473 * 119.66683 * 0.25690 * 15 6 5 17 17 C 1.41192 * 120.21627 * 179.97438 * 16 15 6 18 18 H 1.08006 * 119.99586 * 204.70621 * 17 16 15 19 19 C 1.39894 * 120.00144 * 24.70264 * 17 16 15 20 20 N 1.30878 * 120.00078 * 17.77821 * 19 17 16 21 21 Si 1.86809 * 119.99735 * 197.76856 * 19 17 16 22 22 H 1.48496 * 109.47067 * 0.02562 * 21 19 17 23 23 H 1.48499 * 109.46541 * 120.00242 * 21 19 17 24 24 H 1.48497 * 109.47168 * 240.00129 * 21 19 17 25 25 H 1.08997 * 109.47708 * 60.00064 * 1 2 3 26 26 H 1.09002 * 109.47111 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.46961 * 299.99704 * 1 2 3 28 28 H 1.07991 * 119.83770 * 0.02562 * 4 3 2 29 29 H 1.07996 * 119.77769 * 180.28346 * 5 4 3 30 30 H 1.07993 * 118.08050 * 0.45333 * 8 7 6 31 31 H 1.09000 * 109.36031 * 222.63590 * 9 8 7 32 32 H 1.08998 * 109.36514 * 103.03730 * 9 8 7 33 33 H 1.09003 * 109.47254 * 178.99881 * 11 10 9 34 34 H 1.08998 * 109.47177 * 59.00441 * 11 10 9 35 35 H 1.09000 * 109.47127 * 299.00329 * 11 10 9 36 36 H 1.09003 * 109.47151 * 180.50575 * 12 10 9 37 37 H 1.09006 * 109.47105 * 300.49919 * 12 10 9 38 38 H 1.09000 * 109.47592 * 60.49916 * 12 10 9 39 39 H 1.08999 * 109.63440 * 51.78573 * 13 10 9 40 40 H 1.08996 * 109.63622 * 172.18495 * 13 10 9 41 41 H 1.09000 * 109.35754 * 42.61340 * 14 7 6 42 42 H 1.08997 * 109.25200 * 282.94975 * 14 7 6 43 43 H 1.08000 * 120.16207 * 180.23343 * 15 6 5 44 44 H 0.97005 * 119.99694 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0445 1.2082 0.0000 4 6 1.2911 2.3709 0.0005 5 6 1.9117 3.6032 0.0063 6 6 3.3101 3.6941 0.0009 7 6 3.9630 5.0199 0.0019 8 6 4.6749 5.3579 -1.0463 9 6 5.4001 6.6655 -1.1779 10 6 4.8582 7.6730 -0.1617 11 6 3.4410 8.0914 -0.5582 12 6 5.7648 8.9047 -0.1192 13 6 4.8312 7.0050 1.2186 14 6 3.7728 5.9000 1.2026 15 6 4.0832 2.5409 0.0003 16 6 3.4565 1.2838 -0.0002 17 6 4.2314 0.1035 -0.0013 18 1 3.8172 -0.8140 -0.3927 19 6 5.5356 0.1225 0.5044 20 7 5.9219 1.1021 1.2816 21 14 6.7257 -1.2505 0.0705 22 1 6.0490 -2.2300 -0.8171 23 1 7.9046 -0.6806 -0.6298 24 1 7.1695 -1.9319 1.3130 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8901 28 1 0.2128 2.3124 0.0014 29 1 1.3158 4.5038 0.0113 30 1 4.7435 4.6543 -1.8627 31 1 5.2591 7.0571 -2.1853 32 1 6.4637 6.5084 -0.9990 33 1 3.0509 8.7953 0.1769 34 1 2.7990 7.2112 -0.5945 35 1 3.4632 8.5656 -1.5393 36 1 5.3790 9.6146 0.6125 37 1 6.7736 8.6037 0.1635 38 1 5.7877 9.3732 -1.1030 39 1 5.8081 6.5732 1.4358 40 1 4.5808 7.7450 1.9787 41 1 3.8629 5.3002 2.1082 42 1 2.7809 6.3503 1.1646 43 1 5.1609 2.6102 -0.0001 44 1 6.8261 1.1151 1.6325 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242328794.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:40 Heat of formation + Delta-G solvation = -44.021096 kcal Electronic energy + Delta-G solvation = -22785.140072 eV Core-core repulsion = 19665.957176 eV Total energy + Delta-G solvation = -3119.182896 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 286.167 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.76613 -40.07558 -37.89091 -35.73859 -34.22230 -31.80059 -31.60550 -30.29125 -28.17112 -28.07351 -27.24524 -26.39090 -24.06806 -22.74098 -22.39717 -20.59617 -19.28873 -18.31317 -17.75332 -17.14697 -16.64787 -16.30553 -16.20107 -15.67489 -15.23400 -14.99230 -14.80689 -14.56271 -14.33913 -14.28155 -13.62929 -13.45501 -13.31040 -13.12771 -12.98090 -12.82636 -12.68353 -12.64719 -12.48028 -12.44754 -12.31589 -12.10628 -11.76891 -11.49900 -11.34043 -11.29320 -11.03807 -11.01276 -10.83854 -9.61051 -9.40306 -8.71968 -8.47678 -6.22087 0.83990 1.00171 1.36222 1.43148 1.51643 1.58763 2.22484 2.71829 2.92314 3.63485 3.79450 3.84470 3.95932 4.26520 4.35964 4.39659 4.42619 4.47669 4.49963 4.57350 4.61144 4.62475 4.72693 4.80795 4.86388 4.97077 4.99953 5.04787 5.09156 5.13522 5.13965 5.17601 5.21180 5.31583 5.35068 5.46248 5.46495 5.51445 5.63684 5.74185 5.85537 5.98281 6.11796 6.24366 6.35187 6.54187 6.80557 6.93015 7.23746 8.37269 Molecular weight = 286.17amu Principal moments of inertia in cm(-1) A = 0.014961 B = 0.005289 C = 0.004142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1871.080660 B = 5293.148964 C = 6759.173201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.341 6.341 3 C -0.002 4.002 4 C -0.181 4.181 5 C -0.191 4.191 6 C -0.077 4.077 7 C -0.067 4.067 8 C -0.165 4.165 9 C -0.068 4.068 10 C -0.062 4.062 11 C -0.140 4.140 12 C -0.135 4.135 13 C -0.102 4.102 14 C -0.072 4.072 15 C -0.148 4.148 16 C 0.056 3.944 17 C -0.486 4.486 18 H 0.067 0.933 19 C 0.034 3.966 20 N -0.827 5.827 21 Si 0.978 3.022 22 H -0.262 1.262 23 H -0.262 1.262 24 H -0.265 1.265 25 H 0.052 0.948 26 H 0.111 0.889 27 H 0.050 0.950 28 H 0.128 0.872 29 H 0.117 0.883 30 H 0.078 0.922 31 H 0.079 0.921 32 H 0.070 0.930 33 H 0.064 0.936 34 H 0.044 0.956 35 H 0.060 0.940 36 H 0.065 0.935 37 H 0.054 0.946 38 H 0.063 0.937 39 H 0.052 0.948 40 H 0.082 0.918 41 H 0.049 0.951 42 H 0.082 0.918 43 H 0.105 0.895 44 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.103 11.948 -1.787 12.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.256 6.256 3 C -0.047 4.047 4 C -0.199 4.199 5 C -0.211 4.211 6 C -0.078 4.078 7 C -0.067 4.067 8 C -0.183 4.183 9 C -0.105 4.105 10 C -0.062 4.062 11 C -0.197 4.197 12 C -0.192 4.192 13 C -0.140 4.140 14 C -0.109 4.109 15 C -0.168 4.168 16 C 0.054 3.946 17 C -0.516 4.516 18 H 0.085 0.915 19 C -0.179 4.179 20 N -0.454 5.454 21 Si 0.799 3.201 22 H -0.186 1.186 23 H -0.187 1.187 24 H -0.189 1.189 25 H 0.071 0.929 26 H 0.129 0.871 27 H 0.068 0.932 28 H 0.145 0.855 29 H 0.135 0.865 30 H 0.097 0.903 31 H 0.098 0.902 32 H 0.089 0.911 33 H 0.083 0.917 34 H 0.063 0.937 35 H 0.079 0.921 36 H 0.084 0.916 37 H 0.073 0.927 38 H 0.082 0.918 39 H 0.071 0.929 40 H 0.101 0.899 41 H 0.068 0.932 42 H 0.100 0.900 43 H 0.123 0.877 44 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -1.833 11.833 -1.644 12.087 hybrid contribution 0.182 -1.110 -0.052 1.126 sum -1.651 10.723 -1.696 10.982 Atomic orbital electron populations 1.23082 0.78657 1.04170 1.00948 1.85893 1.21506 1.28018 1.90216 1.19490 0.92237 0.83973 1.08997 1.20876 0.98873 0.92153 1.08030 1.20518 0.93059 0.96082 1.11393 1.19066 0.93386 0.92889 1.02428 1.19749 0.97942 0.92811 0.96187 1.22332 0.99809 0.98691 0.97493 1.20487 0.98592 0.91460 0.99968 1.20577 0.96470 0.94949 0.94197 1.21894 0.95385 1.00927 1.01518 1.21806 0.98739 0.96153 1.02475 1.21651 0.98073 0.96767 0.97485 1.20342 1.00404 0.95539 0.94566 1.21134 0.98566 0.90426 1.06680 1.17409 0.88900 0.94568 0.93711 1.19520 0.98336 0.96359 1.37409 0.91502 1.26657 0.99828 0.99404 0.92035 1.69908 1.19630 1.32534 1.23328 0.85227 0.77592 0.78109 0.79188 1.18612 1.18698 1.18940 0.92895 0.87075 0.93160 0.85466 0.86481 0.90333 0.90207 0.91138 0.91665 0.93658 0.92132 0.91576 0.92713 0.91778 0.92932 0.89912 0.93210 0.89990 0.87704 0.90385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.88 9.81 113.37 1.11 2.00 16 2 O -0.34 -16.46 9.76 -89.03 -0.87 -17.33 16 3 C 0.00 -0.13 6.72 23.12 0.16 0.03 16 4 C -0.18 -8.18 9.01 22.28 0.20 -7.97 16 5 C -0.19 -8.49 9.72 22.67 0.22 -8.27 16 6 C -0.08 -3.66 5.10 -20.15 -0.10 -3.77 16 7 C -0.07 -2.61 4.57 -17.71 -0.08 -2.69 16 8 C -0.16 -5.93 8.94 25.32 0.23 -5.71 16 9 C -0.07 -1.83 4.88 29.66 0.14 -1.69 16 10 C -0.06 -1.41 0.79 -52.06 -0.04 -1.45 16 11 C -0.14 -3.04 7.79 71.98 0.56 -2.48 16 12 C -0.13 -2.35 8.49 71.98 0.61 -1.74 16 13 C -0.10 -2.65 4.94 30.72 0.15 -2.50 16 14 C -0.07 -2.34 5.12 29.66 0.15 -2.19 16 15 C -0.15 -8.13 8.28 22.96 0.19 -7.94 16 16 C 0.06 3.25 5.58 -21.23 -0.12 3.13 16 17 C -0.49 -28.27 8.71 23.40 0.20 -28.06 16 18 H 0.07 3.91 7.64 -2.91 -0.02 3.89 16 19 C 0.03 1.84 5.14 85.24 0.44 2.28 16 20 N -0.83 -45.33 10.97 21.82 0.24 -45.09 16 21 Si 0.98 40.80 29.60 68.60 2.03 42.83 16 22 H -0.26 -10.88 7.11 99.48 0.71 -10.17 16 23 H -0.26 -10.39 7.11 99.48 0.71 -9.68 16 24 H -0.26 -10.49 7.11 99.48 0.71 -9.78 16 25 H 0.05 1.61 7.66 -2.39 -0.02 1.59 16 26 H 0.11 2.99 8.14 -2.39 -0.02 2.97 16 27 H 0.05 1.57 7.65 -2.38 -0.02 1.55 16 28 H 0.13 4.81 6.27 -2.92 -0.02 4.80 16 29 H 0.12 4.47 8.06 -2.91 -0.02 4.45 16 30 H 0.08 3.13 7.94 -2.91 -0.02 3.11 16 31 H 0.08 1.89 8.12 -2.39 -0.02 1.87 16 32 H 0.07 1.86 8.11 -2.39 -0.02 1.84 16 33 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 34 H 0.04 1.17 5.68 -2.39 -0.01 1.16 16 35 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 36 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 37 H 0.05 0.96 8.14 -2.38 -0.02 0.94 16 38 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 39 H 0.05 1.47 8.12 -2.39 -0.02 1.45 16 40 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 41 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 42 H 0.08 2.43 6.91 -2.39 -0.02 2.41 16 43 H 0.11 6.08 6.17 -2.91 -0.02 6.07 16 44 H 0.29 14.14 8.30 -92.70 -0.77 13.37 16 Total: -1.00 -65.34 346.97 6.39 -58.95 By element: Atomic # 1 Polarization: 28.70 SS G_CDS: 0.97 Total: 29.66 kcal Atomic # 6 Polarization: -73.04 SS G_CDS: 4.02 Total: -69.02 kcal Atomic # 7 Polarization: -45.33 SS G_CDS: 0.24 Total: -45.09 kcal Atomic # 8 Polarization: -16.46 SS G_CDS: -0.87 Total: -17.33 kcal Atomic # 14 Polarization: 40.80 SS G_CDS: 2.03 Total: 42.83 kcal Total: -65.34 6.39 -58.95 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242328794.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.931 kcal (2) G-P(sol) polarization free energy of solvation -65.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.952 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds