Wall clock time and date at job start Tue Mar 31 2020 06:04:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86806 * 119.99967 * 2 1 4 4 H 1.48503 * 109.46705 * 269.99545 * 3 2 1 5 5 H 1.48502 * 109.46835 * 29.99411 * 3 2 1 6 6 H 1.48497 * 109.47026 * 149.99828 * 3 2 1 7 7 C 1.37881 * 120.00368 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00305 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99779 * 0.02562 * 7 2 1 10 10 O 1.42904 * 109.46996 * 179.97438 * 9 7 2 11 11 C 1.35864 * 116.99593 * 179.97438 * 10 9 7 12 12 C 1.38864 * 119.91159 * 179.97438 * 11 10 9 13 13 C 1.37845 * 120.08585 * 180.02562 * 12 11 10 14 14 C 1.39588 * 119.91510 * 0.02562 * 13 12 11 15 15 C 1.47769 * 120.08331 * 179.97438 * 14 13 12 16 16 C 1.29801 * 112.08093 * 64.91732 * 15 14 13 17 17 C 1.51375 * 121.83831 * 173.38408 * 16 15 14 18 18 C 1.53693 * 106.91087 * 282.00100 * 17 16 15 19 19 C 1.52573 * 109.52545 * 54.39221 * 18 17 16 20 20 C 1.51491 * 106.52789 * 64.38526 * 19 18 17 21 21 C 1.52676 * 113.07956 * 277.64950 * 20 19 18 22 22 C 1.48714 * 112.05527 * 244.99708 * 15 14 13 23 23 C 1.39572 * 119.82548 * 0.25335 * 14 13 12 24 24 C 1.37858 * 119.91544 * 359.47010 * 23 14 13 25 25 H 0.96998 * 120.00229 * 0.02562 * 1 2 3 26 26 H 1.08994 * 109.47330 * 59.99153 * 9 7 2 27 27 H 1.09007 * 109.46880 * 299.99214 * 9 7 2 28 28 H 1.08001 * 119.95540 * 0.02562 * 12 11 10 29 29 H 1.08006 * 120.04409 * 179.97438 * 13 12 11 30 30 H 1.07996 * 119.05881 * 353.54828 * 16 15 14 31 31 H 1.09002 * 109.98062 * 162.62523 * 17 16 15 32 32 H 1.09000 * 109.97636 * 41.37755 * 17 16 15 33 33 H 1.08994 * 109.46166 * 174.41286 * 18 17 16 34 34 H 1.08995 * 109.46423 * 294.39386 * 18 17 16 35 35 H 1.08999 * 110.03994 * 183.63267 * 19 18 17 36 36 H 1.08998 * 110.04334 * 305.13513 * 19 18 17 37 37 H 1.09003 * 108.76658 * 38.57910 * 20 19 18 38 38 H 1.09003 * 108.76282 * 156.84221 * 20 19 18 39 39 H 1.09003 * 109.34542 * 82.63918 * 21 20 19 40 40 H 1.08997 * 109.35205 * 202.34299 * 21 20 19 41 41 H 1.09000 * 108.87997 * 58.25734 * 22 15 14 42 42 H 1.08995 * 108.80870 * 299.73376 * 22 15 14 43 43 H 1.07999 * 120.03849 * 179.74508 * 23 14 13 44 44 H 1.07994 * 119.95609 * 180.29811 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0463 -1.4001 5 1 1.4464 2.6527 0.6999 6 1 3.5466 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 8 2.1798 -3.5853 0.0005 11 6 1.6604 -4.8408 0.0011 12 6 2.5080 -5.9408 0.0006 13 6 1.9850 -7.2161 0.0006 14 6 0.6014 -7.4012 0.0006 15 6 0.0367 -8.7667 0.0000 16 6 0.3215 -9.4129 1.0891 17 6 -0.2678 -10.7751 1.3866 18 6 -1.7074 -10.5431 1.8722 19 6 -2.4665 -9.7148 0.8400 20 6 -2.5480 -10.5596 -0.4149 21 6 -1.2854 -10.4846 -1.2699 22 6 -0.7151 -9.0596 -1.2492 23 6 -0.2471 -6.2930 -0.0048 24 6 0.2836 -5.0207 0.0010 25 1 -0.4850 0.8400 -0.0004 26 1 0.6247 -2.5571 -0.8895 27 1 0.6242 -2.5568 0.8904 28 1 3.5784 -5.7968 0.0002 29 1 2.6448 -8.0712 -0.0002 30 1 0.9957 -8.9648 1.8039 31 1 0.3127 -11.2701 2.1652 32 1 -0.2732 -11.3840 0.4826 33 1 -2.2053 -11.5036 2.0046 34 1 -1.6886 -10.0098 2.8226 35 1 -3.4688 -9.4907 1.2049 36 1 -1.9275 -8.7903 0.6333 37 1 -2.7162 -11.5978 -0.1284 38 1 -3.3943 -10.2198 -1.0119 39 1 -0.5412 -11.1771 -0.8766 40 1 -1.5275 -10.7594 -2.2965 41 1 -0.0462 -8.9349 -2.1008 42 1 -1.5368 -8.3493 -1.3395 43 1 -1.3181 -6.4322 -0.0090 44 1 -0.3724 -4.1628 0.0017 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242504166.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:02 Heat of formation + Delta-G solvation = -13.654371 kcal Electronic energy + Delta-G solvation = -22076.823789 eV Core-core repulsion = 18958.957692 eV Total energy + Delta-G solvation = -3117.866096 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 286.167 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.08181 -38.88016 -36.71208 -33.54367 -32.89172 -32.81416 -30.63755 -29.28878 -27.72847 -26.44725 -26.23521 -23.44196 -22.19506 -21.30734 -21.13667 -19.88918 -18.31623 -17.46080 -16.52034 -16.05844 -15.98223 -15.05985 -14.64731 -14.56861 -14.41915 -14.22104 -13.94320 -13.61938 -13.14657 -12.96992 -12.76975 -12.45981 -12.31354 -11.98652 -11.86814 -11.68698 -11.60970 -11.23772 -11.09719 -10.99297 -10.97056 -10.79255 -10.55442 -10.18408 -10.13519 -10.09022 -9.89705 -9.28715 -8.77568 -8.60830 -8.54417 -7.32479 -6.25783 -4.29523 1.76841 1.80238 2.36344 3.23440 3.28545 3.33561 4.16121 4.21523 4.51661 4.57828 4.70986 4.77620 4.92763 4.96045 5.05670 5.11400 5.14211 5.24647 5.30031 5.40107 5.49000 5.62156 5.63011 5.74520 5.77753 5.79858 5.86229 5.88998 5.93024 6.00084 6.06377 6.10731 6.18742 6.28122 6.33459 6.45933 6.55577 6.75905 6.83495 6.90208 7.01725 7.09569 7.13987 7.31989 7.67504 7.94946 8.47762 8.83650 9.35784 10.85485 Molecular weight = 286.17amu Principal moments of inertia in cm(-1) A = 0.033281 B = 0.002950 C = 0.002856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 841.129728 B = 9490.633365 C = 9800.948860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.060 3.940 3 Si 0.913 3.087 4 H -0.277 1.277 5 H -0.283 1.283 6 H -0.270 1.270 7 C -0.525 4.525 8 H 0.070 0.930 9 C 0.193 3.807 10 O -0.318 6.318 11 C 0.153 3.847 12 C -0.169 4.169 13 C -0.076 4.076 14 C -0.135 4.135 15 C -0.062 4.062 16 C -0.146 4.146 17 C -0.104 4.104 18 C -0.112 4.112 19 C -0.136 4.136 20 C -0.118 4.118 21 C -0.128 4.128 22 C -0.069 4.069 23 C -0.070 4.070 24 C -0.210 4.210 25 H 0.267 0.733 26 H 0.021 0.979 27 H 0.021 0.979 28 H 0.124 0.876 29 H 0.119 0.881 30 H 0.112 0.888 31 H 0.062 0.938 32 H 0.083 0.917 33 H 0.058 0.942 34 H 0.058 0.942 35 H 0.059 0.941 36 H 0.086 0.914 37 H 0.056 0.944 38 H 0.053 0.947 39 H 0.074 0.926 40 H 0.061 0.939 41 H 0.074 0.926 42 H 0.074 0.926 43 H 0.115 0.885 44 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.873 -22.219 0.177 22.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.142 4.142 3 Si 0.740 3.260 4 H -0.203 1.203 5 H -0.209 1.209 6 H -0.195 1.195 7 C -0.563 4.563 8 H 0.089 0.911 9 C 0.120 3.880 10 O -0.230 6.230 11 C 0.104 3.896 12 C -0.188 4.188 13 C -0.094 4.094 14 C -0.135 4.135 15 C -0.062 4.062 16 C -0.163 4.163 17 C -0.140 4.140 18 C -0.150 4.150 19 C -0.173 4.173 20 C -0.156 4.156 21 C -0.165 4.165 22 C -0.105 4.105 23 C -0.088 4.088 24 C -0.229 4.229 25 H 0.077 0.923 26 H 0.039 0.961 27 H 0.039 0.961 28 H 0.142 0.858 29 H 0.137 0.863 30 H 0.130 0.870 31 H 0.081 0.919 32 H 0.101 0.899 33 H 0.077 0.923 34 H 0.077 0.923 35 H 0.078 0.922 36 H 0.105 0.895 37 H 0.075 0.925 38 H 0.072 0.928 39 H 0.092 0.908 40 H 0.080 0.920 41 H 0.092 0.908 42 H 0.093 0.907 43 H 0.133 0.867 44 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -3.832 -21.978 0.178 22.310 hybrid contribution 0.078 1.146 0.043 1.150 sum -3.754 -20.831 0.221 21.168 Atomic orbital electron populations 1.69944 1.06140 1.27619 1.49560 1.24939 0.95049 0.99552 0.94664 0.86245 0.79636 0.81732 0.78395 1.20267 1.20887 1.19479 1.20984 0.94275 0.88776 1.52231 0.91150 1.20642 0.88661 0.81824 0.96840 1.86110 1.39144 1.11896 1.85896 1.19361 0.91641 0.86456 0.92101 1.20349 0.99496 0.90538 1.08391 1.20915 0.93915 0.95810 0.98744 1.19286 0.93244 0.93488 1.07476 1.19050 0.98791 0.92901 0.95459 1.22282 1.00450 0.96735 0.96877 1.21265 0.95577 0.95530 1.01673 1.21595 0.95079 0.99580 0.98735 1.21592 1.00250 1.00264 0.95219 1.21254 0.97683 0.99958 0.96659 1.21881 0.97635 0.97365 0.99595 1.20128 0.98909 0.96841 0.94653 1.20899 0.98728 0.91299 0.97881 1.21392 0.94797 0.98397 1.08338 0.92321 0.96102 0.96091 0.85791 0.86283 0.87036 0.91902 0.89928 0.92297 0.92346 0.92201 0.89524 0.92486 0.92841 0.90792 0.92030 0.90759 0.90716 0.86651 0.84958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.04 13.29 55.43 0.74 -25.30 16 2 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 3 Si 0.91 21.38 29.54 -169.99 -5.02 16.36 16 4 H -0.28 -6.36 7.11 56.52 0.40 -5.95 16 5 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 6 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 7 C -0.52 -15.15 9.43 -34.44 -0.32 -15.47 16 8 H 0.07 2.01 7.81 -52.49 -0.41 1.60 16 9 C 0.19 5.20 4.49 36.01 0.16 5.37 16 10 O -0.32 -7.87 10.11 -19.31 -0.20 -8.07 16 11 C 0.15 3.19 6.69 -39.12 -0.26 2.93 16 12 C -0.17 -2.99 9.97 -39.49 -0.39 -3.38 16 13 C -0.08 -1.14 9.29 -39.22 -0.36 -1.50 16 14 C -0.13 -1.96 4.59 -105.00 -0.48 -2.44 16 15 C -0.06 -0.72 3.50 -103.05 -0.36 -1.08 16 16 C -0.15 -1.59 8.18 -35.36 -0.29 -1.88 16 17 C -0.10 -0.91 5.76 -27.19 -0.16 -1.07 16 18 C -0.11 -0.97 5.48 -26.59 -0.15 -1.12 16 19 C -0.14 -1.26 5.66 -27.71 -0.16 -1.41 16 20 C -0.12 -0.97 5.21 -27.66 -0.14 -1.11 16 21 C -0.13 -1.07 5.53 -26.64 -0.15 -1.22 16 22 C -0.07 -0.71 4.51 -28.57 -0.13 -0.84 16 23 C -0.07 -1.13 9.38 -39.22 -0.37 -1.49 16 24 C -0.21 -4.09 9.02 -39.49 -0.36 -4.44 16 25 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 26 H 0.02 0.58 7.65 -51.93 -0.40 0.19 16 27 H 0.02 0.59 7.65 -51.93 -0.40 0.19 16 28 H 0.12 2.04 8.06 -52.49 -0.42 1.61 16 29 H 0.12 1.49 8.06 -52.48 -0.42 1.07 16 30 H 0.11 1.31 7.54 -52.49 -0.40 0.91 16 31 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.08 0.68 4.50 -51.93 -0.23 0.45 16 33 H 0.06 0.45 7.84 -51.93 -0.41 0.04 16 34 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.09 0.94 4.29 -51.93 -0.22 0.71 16 37 H 0.06 0.42 7.61 -51.93 -0.40 0.03 16 38 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.07 0.60 5.07 -51.93 -0.26 0.34 16 40 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 42 H 0.07 0.80 7.20 -51.93 -0.37 0.42 16 43 H 0.12 1.63 7.90 -52.49 -0.41 1.21 16 44 H 0.13 2.71 6.28 -52.49 -0.33 2.38 16 LS Contribution 341.02 15.07 5.14 5.14 Total: -1.00 -29.40 341.02 -10.11 -39.51 By element: Atomic # 1 Polarization: 7.68 SS G_CDS: -6.76 Total: 0.93 kcal Atomic # 6 Polarization: -24.55 SS G_CDS: -4.02 Total: -28.57 kcal Atomic # 7 Polarization: -26.04 SS G_CDS: 0.74 Total: -25.30 kcal Atomic # 8 Polarization: -7.87 SS G_CDS: -0.20 Total: -8.07 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -29.40 -10.11 -39.51 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242504166.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.857 kcal (2) G-P(sol) polarization free energy of solvation -29.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.511 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds