Wall clock time and date at job start Tue Mar 31 2020 06:04:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86806 * 119.99967 * 2 1 4 4 H 1.48503 * 109.46705 * 269.99545 * 3 2 1 5 5 H 1.48502 * 109.46835 * 29.99411 * 3 2 1 6 6 H 1.48497 * 109.47026 * 149.99828 * 3 2 1 7 7 C 1.37881 * 120.00368 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00305 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99779 * 0.02562 * 7 2 1 10 10 O 1.42904 * 109.46996 * 179.97438 * 9 7 2 11 11 C 1.35864 * 116.99593 * 179.97438 * 10 9 7 12 12 C 1.38864 * 119.91159 * 179.97438 * 11 10 9 13 13 C 1.37845 * 120.08585 * 180.02562 * 12 11 10 14 14 C 1.39588 * 119.91510 * 0.02562 * 13 12 11 15 15 C 1.47769 * 120.08331 * 179.97438 * 14 13 12 16 16 C 1.29801 * 112.08093 * 64.91732 * 15 14 13 17 17 C 1.51375 * 121.83831 * 173.38408 * 16 15 14 18 18 C 1.53693 * 106.91087 * 282.00100 * 17 16 15 19 19 C 1.52573 * 109.52545 * 54.39221 * 18 17 16 20 20 C 1.51491 * 106.52789 * 64.38526 * 19 18 17 21 21 C 1.52676 * 113.07956 * 277.64950 * 20 19 18 22 22 C 1.48714 * 112.05527 * 244.99708 * 15 14 13 23 23 C 1.39572 * 119.82548 * 0.25335 * 14 13 12 24 24 C 1.37858 * 119.91544 * 359.47010 * 23 14 13 25 25 H 0.96998 * 120.00229 * 0.02562 * 1 2 3 26 26 H 1.08994 * 109.47330 * 59.99153 * 9 7 2 27 27 H 1.09007 * 109.46880 * 299.99214 * 9 7 2 28 28 H 1.08001 * 119.95540 * 0.02562 * 12 11 10 29 29 H 1.08006 * 120.04409 * 179.97438 * 13 12 11 30 30 H 1.07996 * 119.05881 * 353.54828 * 16 15 14 31 31 H 1.09002 * 109.98062 * 162.62523 * 17 16 15 32 32 H 1.09000 * 109.97636 * 41.37755 * 17 16 15 33 33 H 1.08994 * 109.46166 * 174.41286 * 18 17 16 34 34 H 1.08995 * 109.46423 * 294.39386 * 18 17 16 35 35 H 1.08999 * 110.03994 * 183.63267 * 19 18 17 36 36 H 1.08998 * 110.04334 * 305.13513 * 19 18 17 37 37 H 1.09003 * 108.76658 * 38.57910 * 20 19 18 38 38 H 1.09003 * 108.76282 * 156.84221 * 20 19 18 39 39 H 1.09003 * 109.34542 * 82.63918 * 21 20 19 40 40 H 1.08997 * 109.35205 * 202.34299 * 21 20 19 41 41 H 1.09000 * 108.87997 * 58.25734 * 22 15 14 42 42 H 1.08995 * 108.80870 * 299.73376 * 22 15 14 43 43 H 1.07999 * 120.03849 * 179.74508 * 23 14 13 44 44 H 1.07994 * 119.95609 * 180.29811 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0463 -1.4001 5 1 1.4464 2.6527 0.6999 6 1 3.5466 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 8 2.1798 -3.5853 0.0005 11 6 1.6604 -4.8408 0.0011 12 6 2.5080 -5.9408 0.0006 13 6 1.9850 -7.2161 0.0006 14 6 0.6014 -7.4012 0.0006 15 6 0.0367 -8.7667 0.0000 16 6 0.3215 -9.4129 1.0891 17 6 -0.2678 -10.7751 1.3866 18 6 -1.7074 -10.5431 1.8722 19 6 -2.4665 -9.7148 0.8400 20 6 -2.5480 -10.5596 -0.4149 21 6 -1.2854 -10.4846 -1.2699 22 6 -0.7151 -9.0596 -1.2492 23 6 -0.2471 -6.2930 -0.0048 24 6 0.2836 -5.0207 0.0010 25 1 -0.4850 0.8400 -0.0004 26 1 0.6247 -2.5571 -0.8895 27 1 0.6242 -2.5568 0.8904 28 1 3.5784 -5.7968 0.0002 29 1 2.6448 -8.0712 -0.0002 30 1 0.9957 -8.9648 1.8039 31 1 0.3127 -11.2701 2.1652 32 1 -0.2732 -11.3840 0.4826 33 1 -2.2053 -11.5036 2.0046 34 1 -1.6886 -10.0098 2.8226 35 1 -3.4688 -9.4907 1.2049 36 1 -1.9275 -8.7903 0.6333 37 1 -2.7162 -11.5978 -0.1284 38 1 -3.3943 -10.2198 -1.0119 39 1 -0.5412 -11.1771 -0.8766 40 1 -1.5275 -10.7594 -2.2965 41 1 -0.0462 -8.9349 -2.1008 42 1 -1.5368 -8.3493 -1.3395 43 1 -1.3181 -6.4322 -0.0090 44 1 -0.3724 -4.1628 0.0017 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242504166.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:02 Heat of formation + Delta-G solvation = -27.138248 kcal Electronic energy + Delta-G solvation = -22077.408493 eV Core-core repulsion = 18958.957692 eV Total energy + Delta-G solvation = -3118.450801 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 286.167 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.25272 -40.16974 -38.16165 -35.17631 -34.38780 -33.61146 -32.05424 -30.61452 -29.52022 -27.37670 -27.19188 -25.37689 -23.49130 -22.76171 -21.92236 -20.79602 -19.25299 -19.11463 -18.50311 -17.24605 -17.01900 -16.59710 -16.49968 -16.13031 -15.51717 -15.32583 -14.95949 -14.64708 -14.41010 -14.35557 -13.90291 -13.65491 -13.61073 -13.42458 -13.02322 -12.94455 -12.77286 -12.53264 -12.52887 -12.31078 -12.11084 -11.92704 -11.84739 -11.72499 -11.46499 -11.36953 -11.00272 -10.74615 -10.59052 -9.97709 -9.71379 -8.81148 -8.42435 -6.57417 0.39679 0.40734 1.37138 1.37628 1.40360 1.52463 2.25284 2.73233 2.80442 2.92198 3.66473 3.90280 4.00444 4.01399 4.08094 4.15886 4.18716 4.32080 4.37250 4.39323 4.47545 4.53979 4.68494 4.72567 4.80057 4.89886 4.92343 4.94611 4.95619 5.08138 5.13577 5.16776 5.22063 5.24363 5.28273 5.40235 5.41475 5.46730 5.52888 5.56230 5.59178 5.68088 5.79924 5.80877 5.91713 6.19189 6.47574 6.77262 7.14996 8.69973 Molecular weight = 286.17amu Principal moments of inertia in cm(-1) A = 0.033281 B = 0.002950 C = 0.002856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 841.129728 B = 9490.633365 C = 9800.948860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.011 3.989 3 Si 0.990 3.010 4 H -0.265 1.265 5 H -0.271 1.271 6 H -0.263 1.263 7 C -0.560 4.560 8 H 0.067 0.933 9 C 0.213 3.787 10 O -0.339 6.339 11 C 0.104 3.896 12 C -0.166 4.166 13 C -0.069 4.069 14 C -0.114 4.114 15 C -0.068 4.068 16 C -0.135 4.135 17 C -0.100 4.100 18 C -0.112 4.112 19 C -0.140 4.140 20 C -0.116 4.116 21 C -0.122 4.122 22 C -0.069 4.069 23 C -0.072 4.072 24 C -0.224 4.224 25 H 0.274 0.726 26 H -0.001 1.001 27 H -0.001 1.001 28 H 0.135 0.865 29 H 0.155 0.845 30 H 0.105 0.895 31 H 0.075 0.925 32 H 0.095 0.905 33 H 0.075 0.925 34 H 0.050 0.950 35 H 0.059 0.941 36 H 0.069 0.931 37 H 0.070 0.930 38 H 0.053 0.947 39 H 0.082 0.918 40 H 0.072 0.928 41 H 0.071 0.929 42 H 0.067 0.933 43 H 0.134 0.866 44 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.555 -24.532 0.197 24.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.188 4.188 3 Si 0.811 3.189 4 H -0.190 1.190 5 H -0.196 1.196 6 H -0.187 1.187 7 C -0.597 4.597 8 H 0.085 0.915 9 C 0.140 3.860 10 O -0.253 6.253 11 C 0.058 3.942 12 C -0.185 4.185 13 C -0.087 4.087 14 C -0.114 4.114 15 C -0.068 4.068 16 C -0.153 4.153 17 C -0.137 4.137 18 C -0.149 4.149 19 C -0.177 4.177 20 C -0.154 4.154 21 C -0.159 4.159 22 C -0.106 4.106 23 C -0.090 4.090 24 C -0.243 4.243 25 H 0.083 0.917 26 H 0.017 0.983 27 H 0.017 0.983 28 H 0.153 0.847 29 H 0.173 0.827 30 H 0.123 0.877 31 H 0.093 0.907 32 H 0.113 0.887 33 H 0.094 0.906 34 H 0.068 0.932 35 H 0.078 0.922 36 H 0.087 0.913 37 H 0.089 0.911 38 H 0.071 0.929 39 H 0.100 0.900 40 H 0.091 0.909 41 H 0.090 0.910 42 H 0.085 0.915 43 H 0.152 0.848 44 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -3.522 -24.327 0.197 24.582 hybrid contribution -0.093 1.651 0.077 1.656 sum -3.614 -22.676 0.274 22.964 Atomic orbital electron populations 1.70055 1.07805 1.29117 1.49407 1.25999 0.96048 1.03460 0.93339 0.85089 0.78320 0.76412 0.79038 1.19033 1.19604 1.18740 1.21331 0.94385 0.90183 1.53819 0.91515 1.20150 0.88409 0.82738 0.94692 1.86023 1.38764 1.13010 1.87543 1.19770 0.92918 0.85704 0.95832 1.20596 0.99801 0.90524 1.07585 1.21316 0.94662 0.95618 0.97063 1.19735 0.93086 0.94724 1.03846 1.19067 0.99930 0.91092 0.96692 1.22427 0.99284 0.97703 0.95870 1.21307 0.95495 0.94172 1.02700 1.21601 0.95035 1.00196 0.98065 1.21593 1.00140 0.99834 0.96124 1.21239 0.97617 1.00460 0.96053 1.21849 0.97719 0.95854 1.00450 1.20119 0.98513 0.98260 0.93668 1.21103 1.00056 0.90396 0.97444 1.21319 0.94151 0.99167 1.09678 0.91657 0.98276 0.98322 0.84721 0.82736 0.87748 0.90668 0.88687 0.90626 0.93162 0.92211 0.91299 0.91122 0.92860 0.90003 0.90910 0.91036 0.91465 0.84794 0.87447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.44 13.29 21.45 0.28 -55.15 16 2 C 0.01 0.64 5.46 84.66 0.46 1.10 16 3 Si 0.99 44.15 29.54 68.60 2.03 46.18 16 4 H -0.27 -11.31 7.11 99.48 0.71 -10.61 16 5 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 6 H -0.26 -11.37 7.11 99.48 0.71 -10.67 16 7 C -0.56 -33.77 9.43 25.60 0.24 -33.52 16 8 H 0.07 3.96 7.81 -2.91 -0.02 3.93 16 9 C 0.21 12.39 4.49 71.24 0.32 12.71 16 10 O -0.34 -17.97 10.11 -92.02 -0.93 -18.90 16 11 C 0.10 4.59 6.69 22.57 0.15 4.74 16 12 C -0.17 -5.92 9.97 22.33 0.22 -5.69 16 13 C -0.07 -1.95 9.29 22.50 0.21 -1.75 16 14 C -0.11 -3.17 4.59 -20.11 -0.09 -3.26 16 15 C -0.07 -1.43 3.50 -16.76 -0.06 -1.49 16 16 C -0.13 -2.57 8.18 27.10 0.22 -2.35 16 17 C -0.10 -1.41 5.76 30.30 0.17 -1.24 16 18 C -0.11 -1.61 5.48 30.69 0.17 -1.44 16 19 C -0.14 -2.28 5.66 29.96 0.17 -2.11 16 20 C -0.12 -1.56 5.21 29.99 0.16 -1.41 16 21 C -0.12 -1.66 5.53 30.65 0.17 -1.49 16 22 C -0.07 -1.27 4.51 29.40 0.13 -1.14 16 23 C -0.07 -2.36 9.38 22.50 0.21 -2.15 16 24 C -0.22 -9.29 9.02 22.33 0.20 -9.09 16 25 H 0.27 15.14 8.31 -92.71 -0.77 14.37 16 26 H 0.00 -0.03 7.65 -2.39 -0.02 -0.05 16 27 H 0.00 -0.06 7.65 -2.38 -0.02 -0.08 16 28 H 0.13 4.40 8.06 -2.91 -0.02 4.38 16 29 H 0.16 3.32 8.06 -2.91 -0.02 3.30 16 30 H 0.10 2.17 7.54 -2.91 -0.02 2.15 16 31 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 32 H 0.10 1.16 4.50 -2.39 -0.01 1.14 16 33 H 0.08 0.87 7.84 -2.39 -0.02 0.85 16 34 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 35 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 36 H 0.07 1.38 4.29 -2.39 -0.01 1.37 16 37 H 0.07 0.79 7.61 -2.39 -0.02 0.77 16 38 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 39 H 0.08 1.00 5.07 -2.39 -0.01 0.99 16 40 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 41 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 42 H 0.07 1.34 7.20 -2.39 -0.02 1.33 16 43 H 0.13 3.81 7.90 -2.91 -0.02 3.78 16 44 H 0.11 4.89 6.28 -2.91 -0.02 4.87 16 Total: -1.00 -66.30 341.02 5.42 -60.89 By element: Atomic # 1 Polarization: 15.59 SS G_CDS: 0.98 Total: 16.56 kcal Atomic # 6 Polarization: -52.64 SS G_CDS: 3.06 Total: -49.58 kcal Atomic # 7 Polarization: -55.44 SS G_CDS: 0.28 Total: -55.15 kcal Atomic # 8 Polarization: -17.97 SS G_CDS: -0.93 Total: -18.90 kcal Atomic # 14 Polarization: 44.15 SS G_CDS: 2.03 Total: 46.18 kcal Total: -66.30 5.42 -60.89 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242504166.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.748 kcal (2) G-P(sol) polarization free energy of solvation -66.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.886 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds