Wall clock time and date at job start Tue Mar 31 2020 05:38:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.46888 * 2 1 4 4 H 1.08998 * 109.47177 * 305.60336 * 3 2 1 5 5 C 1.50694 * 109.47448 * 65.61071 * 3 2 1 6 6 H 1.08003 * 120.00082 * 27.06737 * 5 3 2 7 7 C 1.37877 * 120.00365 * 207.07188 * 5 3 2 8 8 N 1.31515 * 119.99858 * 6.27411 * 7 5 3 9 9 Si 1.86797 * 120.00066 * 186.27379 * 7 5 3 10 10 H 1.48503 * 109.47212 * 60.00330 * 9 7 5 11 11 H 1.48504 * 109.47050 * 180.02562 * 9 7 5 12 12 H 1.48496 * 109.47469 * 299.99986 * 9 7 5 13 13 N 1.46505 * 109.46824 * 185.61201 * 3 2 1 14 14 N 1.40073 * 125.92766 * 300.01877 * 13 3 2 15 15 C 1.31651 * 108.10555 * 179.97438 * 14 13 3 16 16 C 1.48359 * 126.04116 * 180.02562 * 15 14 13 17 17 C 1.39774 * 120.90022 * 179.69807 * 16 15 14 18 18 C 1.37970 * 119.01925 * 179.73141 * 17 16 15 19 19 N 1.31940 * 120.87741 * 0.55180 * 18 17 16 20 20 C 1.31935 * 122.00520 * 359.72401 * 19 18 17 21 21 C 1.37955 * 120.87882 * 359.97438 * 20 19 18 22 22 C 1.40871 * 107.91465 * 0.02562 * 15 14 13 23 23 C 1.35048 * 125.93217 * 120.00220 * 13 3 2 24 24 C 1.50704 * 126.00597 * 359.97438 * 23 13 3 25 25 N 1.46906 * 109.46605 * 275.00068 * 24 23 13 26 26 H 1.09002 * 109.47367 * 54.18947 * 1 2 3 27 27 H 1.08998 * 109.46912 * 174.19161 * 1 2 3 28 28 H 1.08997 * 109.47338 * 294.18799 * 1 2 3 29 29 H 1.09005 * 109.46890 * 239.99960 * 2 1 3 30 30 H 1.09000 * 109.47261 * 120.00053 * 2 1 3 31 31 H 0.96997 * 119.99838 * 179.97438 * 8 7 5 32 32 H 1.08005 * 120.49373 * 0.02562 * 17 16 15 33 33 H 1.07996 * 119.55900 * 180.29965 * 18 17 16 34 34 H 1.07996 * 119.55970 * 180.02562 * 20 19 18 35 35 H 1.08008 * 120.49080 * 179.97438 * 21 20 19 36 36 H 1.08000 * 126.07170 * 179.97438 * 22 15 14 37 37 H 1.08995 * 109.47266 * 34.99832 * 24 23 13 38 38 H 1.08998 * 109.47051 * 155.00565 * 24 23 13 39 39 H 1.00896 * 111.00036 * 56.04754 * 25 24 23 40 40 H 1.00902 * 110.99636 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5970 1.9844 -0.8355 5 6 1.6543 2.1117 1.2939 6 1 1.5117 1.5202 2.1863 7 6 1.4833 3.4791 1.3387 8 7 1.5349 4.1849 0.2302 9 14 1.1783 4.3291 2.9739 10 1 2.3265 4.0813 3.8824 11 1 1.0283 5.7898 2.7520 12 1 -0.0630 3.7922 3.5871 13 7 3.4987 1.4447 -0.1351 14 7 4.4068 0.8468 0.7480 15 6 5.6229 1.0610 0.2916 16 6 6.8851 0.6000 0.9203 17 6 8.1232 0.8841 0.3371 18 6 9.2730 0.4413 0.9579 19 7 9.2132 -0.2501 2.0801 20 6 8.0652 -0.5442 2.6599 21 6 6.8685 -0.1349 2.1091 22 6 5.5138 1.8053 -0.8995 23 6 4.2014 2.0232 -1.1328 24 6 3.6228 2.7786 -2.3015 25 7 3.2586 1.8320 -3.3642 26 1 -0.3634 0.6013 -0.8334 27 1 -0.3633 -1.0224 -0.1040 28 1 -0.3634 0.4210 0.9374 29 1 1.8933 -0.5139 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 1.4143 5.1468 0.2617 32 1 8.1792 1.4462 -0.5835 33 1 10.2344 0.6602 0.5174 34 1 8.0624 -1.1123 3.5784 35 1 5.9322 -0.3795 2.5889 36 1 6.3339 2.1418 -1.5164 37 1 2.7348 3.3221 -1.9791 38 1 4.3626 3.4835 -2.6807 39 1 2.6225 1.1287 -3.0196 40 1 2.8683 2.3144 -4.1599 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255159574.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:32 Heat of formation + Delta-G solvation = 92.762790 kcal Electronic energy + Delta-G solvation = -22459.045698 eV Core-core repulsion = 19274.546604 eV Total energy + Delta-G solvation = -3184.499094 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 286.149 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.46934 -39.46325 -35.36997 -34.29781 -32.75221 -32.20428 -31.02393 -29.77340 -29.12227 -26.57646 -24.47406 -24.22873 -23.15864 -22.93155 -20.60357 -19.61705 -18.68373 -16.92498 -16.58441 -15.78590 -15.49884 -15.29007 -14.95382 -14.83327 -14.40721 -13.86843 -13.68251 -13.41954 -13.28679 -13.15910 -12.93541 -12.58249 -11.96462 -11.79750 -11.67252 -11.34182 -11.25399 -11.21965 -10.99389 -10.72033 -10.45447 -10.14634 -9.85730 -9.48698 -9.40717 -9.29084 -8.92216 -8.89172 -8.40903 -7.94384 -7.49029 -6.48485 -4.55646 1.28406 1.40833 2.92499 3.10934 3.17349 3.22402 3.56257 3.58306 4.12945 4.32250 4.66042 4.83381 4.97338 5.06106 5.15857 5.38361 5.40829 5.47165 5.76623 5.82329 5.87534 5.89291 5.95393 6.06042 6.13916 6.24003 6.34635 6.39019 6.48457 6.55523 6.69141 6.70893 6.92003 6.93632 6.98657 7.16615 7.37506 7.44384 7.52818 7.70114 7.81604 8.18503 8.25857 8.54504 8.74398 9.14663 10.57136 Molecular weight = 286.15amu Principal moments of inertia in cm(-1) A = 0.014052 B = 0.005549 C = 0.004904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1992.176548 B = 5044.424905 C = 5708.066331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.119 4.119 3 C 0.253 3.747 4 H 0.086 0.914 5 C -0.508 4.508 6 H 0.067 0.933 7 C 0.077 3.923 8 N -0.875 5.875 9 Si 0.902 3.098 10 H -0.273 1.273 11 H -0.284 1.284 12 H -0.272 1.272 13 N -0.296 5.296 14 N -0.265 5.265 15 C 0.049 3.951 16 C 0.063 3.937 17 C -0.162 4.162 18 C 0.093 3.907 19 N -0.499 5.499 20 C 0.094 3.906 21 C -0.156 4.156 22 C -0.263 4.263 23 C 0.086 3.914 24 C 0.120 3.880 25 N -0.845 5.845 26 H 0.047 0.953 27 H 0.038 0.962 28 H 0.065 0.935 29 H 0.037 0.963 30 H 0.060 0.940 31 H 0.270 0.730 32 H 0.136 0.864 33 H 0.153 0.847 34 H 0.153 0.847 35 H 0.139 0.861 36 H 0.130 0.870 37 H 0.072 0.928 38 H 0.081 0.919 39 H 0.339 0.661 40 H 0.339 0.661 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.812 -3.825 -3.518 7.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.157 4.157 3 C 0.158 3.842 4 H 0.103 0.897 5 C -0.547 4.547 6 H 0.085 0.915 7 C -0.130 4.130 8 N -0.510 5.510 9 Si 0.728 3.272 10 H -0.198 1.198 11 H -0.210 1.210 12 H -0.197 1.197 13 N -0.079 5.079 14 N -0.091 5.091 15 C -0.111 4.111 16 C 0.053 3.947 17 C -0.183 4.183 18 C -0.063 4.063 19 N -0.209 5.209 20 C -0.062 4.062 21 C -0.177 4.177 22 C -0.294 4.294 23 C -0.044 4.044 24 C -0.012 4.012 25 N -0.375 5.375 26 H 0.066 0.934 27 H 0.057 0.943 28 H 0.084 0.916 29 H 0.056 0.944 30 H 0.079 0.921 31 H 0.080 0.920 32 H 0.154 0.846 33 H 0.170 0.830 34 H 0.170 0.830 35 H 0.157 0.843 36 H 0.148 0.852 37 H 0.090 0.910 38 H 0.099 0.901 39 H 0.151 0.849 40 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 5.425 -4.612 -2.310 7.486 hybrid contribution -1.379 1.766 -0.047 2.241 sum 4.046 -2.846 -2.357 5.479 Atomic orbital electron populations 1.21564 0.95370 0.99419 1.02629 1.21726 0.96000 0.97527 1.00468 1.19574 0.71462 0.92869 1.00312 0.89672 1.21147 1.46116 0.92089 0.95351 0.91528 1.25115 0.93137 0.97614 0.97163 1.69798 1.46680 1.07647 1.26907 0.86478 0.79187 0.78150 0.83357 1.19782 1.20960 1.19671 1.51007 1.07977 1.35381 1.13552 1.77353 0.97364 1.18838 1.15554 1.20238 0.91482 1.03106 0.96301 1.18296 0.90679 0.93052 0.92677 1.22112 0.92224 1.02177 1.01796 1.22553 0.97990 0.94191 0.91565 1.67584 1.29736 1.13231 1.10340 1.22593 0.87456 0.97229 0.98955 1.22276 1.00264 0.98960 0.96230 1.20851 0.95508 1.11977 1.01062 1.20743 0.91901 0.99168 0.92594 1.20321 1.00758 0.92666 0.87442 1.58780 1.51331 1.17740 1.09623 0.93418 0.94270 0.91641 0.94375 0.92082 0.91997 0.84637 0.82983 0.82999 0.84266 0.85205 0.90974 0.90091 0.84918 0.84893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.29 9.64 37.16 0.36 -1.93 16 2 C -0.12 -2.35 5.64 -26.73 -0.15 -2.50 16 3 C 0.25 5.70 2.53 -69.08 -0.17 5.53 16 4 H 0.09 1.99 6.08 -51.93 -0.32 1.68 16 5 C -0.51 -12.71 7.67 -34.44 -0.26 -12.98 16 6 H 0.07 1.71 7.82 -52.48 -0.41 1.30 16 7 C 0.08 1.93 5.45 -17.82 -0.10 1.83 16 8 N -0.87 -22.10 12.50 55.43 0.69 -21.41 16 9 Si 0.90 20.21 29.54 -169.99 -5.02 15.19 16 10 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 11 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 12 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 13 N -0.30 -6.72 3.27 -51.85 -0.17 -6.89 16 14 N -0.26 -6.12 12.17 33.42 0.41 -5.72 16 15 C 0.05 1.02 7.01 -82.78 -0.58 0.44 16 16 C 0.06 1.12 5.91 -104.58 -0.62 0.51 16 17 C -0.16 -2.42 9.66 -39.11 -0.38 -2.80 16 18 C 0.09 1.29 11.17 -17.60 -0.20 1.09 16 19 N -0.50 -7.57 10.35 -13.35 -0.14 -7.71 16 20 C 0.09 1.37 11.17 -17.61 -0.20 1.17 16 21 C -0.16 -2.58 9.78 -39.11 -0.38 -2.97 16 22 C -0.26 -5.30 10.13 -39.71 -0.40 -5.70 16 23 C 0.09 1.81 6.43 -82.30 -0.53 1.28 16 24 C 0.12 2.16 6.73 -4.97 -0.03 2.13 16 25 N -0.85 -13.02 9.61 -11.40 -0.11 -13.13 16 26 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 27 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16 28 H 0.06 1.20 7.59 -51.93 -0.39 0.81 16 29 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 31 H 0.27 6.60 8.31 -40.82 -0.34 6.26 16 32 H 0.14 1.78 7.18 -52.48 -0.38 1.40 16 33 H 0.15 1.57 8.06 -52.49 -0.42 1.15 16 34 H 0.15 1.75 8.06 -52.49 -0.42 1.33 16 35 H 0.14 2.32 7.94 -52.48 -0.42 1.91 16 36 H 0.13 2.26 7.42 -52.49 -0.39 1.87 16 37 H 0.07 1.46 6.91 -51.93 -0.36 1.10 16 38 H 0.08 1.35 8.14 -51.93 -0.42 0.92 16 39 H 0.34 5.36 8.98 -39.29 -0.35 5.01 16 40 H 0.34 4.26 9.08 -39.29 -0.36 3.91 16 LS Contribution 341.84 15.07 5.15 5.15 Total: -1.00 -28.14 341.84 -8.30 -36.44 By element: Atomic # 1 Polarization: 18.42 SS G_CDS: -5.47 Total: 12.95 kcal Atomic # 6 Polarization: -11.24 SS G_CDS: -3.65 Total: -14.89 kcal Atomic # 7 Polarization: -55.53 SS G_CDS: 0.68 Total: -54.84 kcal Atomic # 14 Polarization: 20.21 SS G_CDS: -5.02 Total: 15.19 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -28.14 -8.30 -36.44 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255159574.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.205 kcal (2) G-P(sol) polarization free energy of solvation -28.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.442 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds