Wall clock time and date at job start Tue Mar 31 2020 06:01:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42899 * 114.00023 * 2 1 4 4 C 1.52996 * 109.46758 * 179.97438 * 3 2 1 5 5 C 1.53005 * 109.47147 * 179.97438 * 4 3 2 6 6 O 1.42894 * 109.47303 * 179.97438 * 5 4 3 7 7 C 1.42900 * 114.00357 * 180.02562 * 6 5 4 8 8 C 1.52999 * 109.47458 * 180.02562 * 7 6 5 9 9 C 1.50703 * 109.46850 * 179.97438 * 8 7 6 10 10 O 1.20824 * 120.00159 * 0.02562 * 9 8 7 11 11 O 1.34233 * 119.99694 * 179.97438 * 9 8 7 12 12 C 1.45191 * 116.99742 * 185.11513 * 11 9 8 13 13 C 1.50701 * 112.85371 * 296.94574 * 12 11 9 14 14 H 1.08004 * 119.99923 * 115.13254 * 13 12 11 15 15 C 1.37877 * 119.99806 * 295.41590 * 13 12 11 16 16 N 1.31512 * 120.00075 * 4.92997 * 15 13 12 17 17 Si 1.86803 * 119.99926 * 184.94296 * 15 13 12 18 18 H 1.48502 * 109.47197 * 59.99063 * 17 15 13 19 19 H 1.48496 * 109.47285 * 179.97438 * 17 15 13 20 20 H 1.48506 * 109.46697 * 299.99390 * 17 15 13 21 21 C 1.53785 * 113.61631 * 68.14533 * 12 11 9 22 22 C 1.53959 * 87.02053 * 89.22699 * 21 12 11 23 23 C 1.53784 * 87.11062 * 25.36457 * 22 21 12 24 24 H 1.08996 * 109.47611 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.47201 * 300.00323 * 1 2 3 26 26 H 1.09007 * 109.46625 * 59.99886 * 1 2 3 27 27 H 1.09001 * 109.46958 * 59.99766 * 3 2 1 28 28 H 1.08996 * 109.47352 * 299.99518 * 3 2 1 29 29 H 1.09001 * 109.47385 * 60.00262 * 4 3 2 30 30 H 1.09004 * 109.47314 * 300.00001 * 4 3 2 31 31 H 1.09001 * 109.46625 * 59.99967 * 5 4 3 32 32 H 1.08990 * 109.47022 * 300.00290 * 5 4 3 33 33 H 1.09000 * 109.46574 * 60.00182 * 7 6 5 34 34 H 1.09003 * 109.46862 * 300.00507 * 7 6 5 35 35 H 1.08995 * 109.47129 * 59.99878 * 8 7 6 36 36 H 1.08995 * 109.46911 * 299.99977 * 8 7 6 37 37 H 0.96998 * 120.00027 * 185.00155 * 16 15 13 38 38 H 1.08993 * 113.61470 * 203.74528 * 21 12 11 39 39 H 1.08997 * 113.61498 * 334.64983 * 21 12 11 40 40 H 1.08997 * 113.53953 * 270.81115 * 22 21 12 41 41 H 1.09001 * 113.74435 * 139.94021 * 22 21 12 42 42 H 1.09002 * 113.61550 * 220.09147 * 23 22 21 43 43 H 1.09001 * 113.69217 * 89.19816 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1845 0.0006 5 6 4.1579 2.5823 0.0000 6 8 5.5823 2.4694 0.0012 7 6 6.2650 3.7248 0.0013 8 6 7.7759 3.4839 0.0020 9 6 8.4956 4.8079 0.0015 10 8 7.8648 5.8384 0.0011 11 8 9.8375 4.8423 0.0024 12 6 10.4633 6.1474 0.1172 13 6 10.1458 7.0529 -1.0448 14 1 9.5725 7.9544 -0.8860 15 6 10.5821 6.7276 -2.3116 16 7 11.1906 5.5811 -2.5232 17 14 10.3093 7.9155 -3.7272 18 1 10.9904 9.2017 -3.4324 19 1 10.8673 7.3350 -4.9750 20 1 8.8537 8.1542 -3.8995 21 6 10.2575 6.8108 1.4893 22 6 11.5457 6.0969 1.9379 23 6 11.9617 6.0843 0.4575 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5139 -0.8901 27 1 1.6886 1.8464 0.8900 28 1 1.6887 1.8463 -0.8900 29 1 3.8574 0.6435 -0.8891 30 1 3.8567 0.6438 0.8909 31 1 3.8359 3.1237 0.8896 32 1 3.8366 3.1226 -0.8903 33 1 5.9863 4.2897 0.8909 34 1 5.9877 4.2891 -0.8891 35 1 8.0541 2.9191 -0.8877 36 1 8.0533 2.9194 0.8921 37 1 11.5618 5.3831 -3.3972 38 1 10.3456 7.8969 1.4667 39 1 9.3634 6.4683 2.0101 40 1 11.3715 5.1034 2.3510 41 1 12.1907 6.7099 2.5675 42 1 12.4413 5.1562 0.1465 43 1 12.5168 6.9710 0.1510 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001343476047.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:32 Heat of formation + Delta-G solvation = -165.420804 kcal Electronic energy + Delta-G solvation = -22709.793689 eV Core-core repulsion = 19142.204492 eV Total energy + Delta-G solvation = -3567.589197 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 286.166 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.46626 -38.51254 -37.84625 -36.95226 -34.08112 -33.23870 -32.33768 -30.92912 -27.34652 -26.50269 -25.12339 -24.58639 -23.79514 -22.35387 -21.79981 -19.89672 -18.18290 -17.35471 -16.88404 -16.77642 -16.30848 -15.97512 -15.35301 -15.15448 -14.89123 -14.68741 -14.58579 -14.23009 -13.99863 -13.61882 -13.19307 -12.69041 -12.21741 -12.01191 -11.76846 -11.65131 -11.55829 -11.40528 -11.32102 -11.12618 -10.95086 -10.90259 -10.82974 -10.49568 -10.12841 -10.00988 -9.99504 -9.93481 -9.54564 -9.30210 -8.78572 -8.50365 -8.37371 -6.07158 -4.17960 3.05813 3.29663 3.33986 3.37927 3.45299 3.67913 4.36848 4.39254 4.66999 4.82381 4.95177 4.98175 5.05096 5.16110 5.16930 5.23602 5.29592 5.32926 5.33913 5.40476 5.63056 5.69619 5.75693 5.84240 5.87336 5.90683 6.10121 6.15837 6.20302 6.42595 6.45054 6.76267 6.80318 6.81839 7.17201 7.22128 7.25163 7.51966 7.80767 7.92408 8.33516 8.83932 9.18081 9.51367 10.97555 Molecular weight = 286.17amu Principal moments of inertia in cm(-1) A = 0.021382 B = 0.002979 C = 0.002739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1309.222976 B = 9396.716442 C =10220.548667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.391 6.391 3 C 0.064 3.936 4 C -0.119 4.119 5 C 0.068 3.932 6 O -0.389 6.389 7 C 0.079 3.921 8 C -0.117 4.117 9 C 0.466 3.534 10 O -0.512 6.512 11 O -0.334 6.334 12 C 0.234 3.766 13 C -0.518 4.518 14 H 0.065 0.935 15 C 0.074 3.926 16 N -0.865 5.865 17 Si 0.891 3.109 18 H -0.275 1.275 19 H -0.286 1.286 20 H -0.275 1.275 21 C -0.152 4.152 22 C -0.152 4.152 23 C -0.096 4.096 24 H 0.086 0.914 25 H 0.041 0.959 26 H 0.041 0.959 27 H 0.051 0.949 28 H 0.052 0.948 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.050 0.950 32 H 0.051 0.949 33 H 0.057 0.943 34 H 0.060 0.940 35 H 0.104 0.896 36 H 0.100 0.900 37 H 0.262 0.738 38 H 0.081 0.919 39 H 0.049 0.951 40 H 0.068 0.932 41 H 0.053 0.947 42 H 0.063 0.937 43 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.681 -7.759 5.882 16.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.310 6.310 3 C -0.012 4.012 4 C -0.157 4.157 5 C -0.009 4.009 6 O -0.309 6.309 7 C 0.002 3.998 8 C -0.155 4.155 9 C 0.308 3.692 10 O -0.401 6.401 11 O -0.250 6.250 12 C 0.199 3.801 13 C -0.555 4.555 14 H 0.083 0.917 15 C -0.132 4.132 16 N -0.502 5.502 17 Si 0.718 3.282 18 H -0.200 1.200 19 H -0.212 1.212 20 H -0.201 1.201 21 C -0.190 4.190 22 C -0.190 4.190 23 C -0.134 4.134 24 H 0.104 0.896 25 H 0.060 0.940 26 H 0.060 0.940 27 H 0.070 0.930 28 H 0.070 0.930 29 H 0.099 0.901 30 H 0.098 0.902 31 H 0.068 0.932 32 H 0.069 0.931 33 H 0.076 0.924 34 H 0.078 0.922 35 H 0.123 0.877 36 H 0.118 0.882 37 H 0.072 0.928 38 H 0.099 0.901 39 H 0.068 0.932 40 H 0.087 0.913 41 H 0.071 0.929 42 H 0.082 0.918 43 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -13.570 -7.909 5.722 16.716 hybrid contribution -0.531 1.163 -0.929 1.581 sum -14.101 -6.745 4.793 16.349 Atomic orbital electron populations 1.22750 0.80881 1.02821 1.00040 1.87871 1.19794 1.27916 1.95447 1.22384 0.93636 0.84748 1.00477 1.21370 0.92440 0.97047 1.04793 1.22242 0.81572 0.96553 1.00537 1.87776 1.17465 1.30038 1.95595 1.22172 0.91153 0.84645 1.01788 1.21104 0.92864 0.95589 1.05966 1.22581 0.82950 0.90118 0.73538 1.90571 1.68242 1.35734 1.45590 1.86400 1.18972 1.38507 1.81075 1.20622 0.89778 0.77942 0.91712 1.21189 1.35662 1.07037 0.91657 0.91716 1.25071 0.94774 0.94696 0.98611 1.70046 1.36000 1.20786 1.23368 0.86678 0.78799 0.81324 0.81400 1.20000 1.21195 1.20082 1.23478 0.96188 1.00255 0.99078 1.23029 0.98332 0.99726 0.97902 1.22733 0.96802 1.01705 0.92157 0.89555 0.94024 0.94011 0.93045 0.93003 0.90120 0.90167 0.93156 0.93069 0.92448 0.92162 0.87743 0.88201 0.92798 0.90082 0.93195 0.91329 0.92869 0.91840 0.89904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 11.01 101.05 1.11 1.33 16 2 O -0.39 -3.98 10.70 -35.23 -0.38 -4.36 16 3 C 0.06 0.57 5.94 37.16 0.22 0.79 16 4 C -0.12 -1.21 5.95 -26.73 -0.16 -1.37 16 5 C 0.07 0.77 5.94 37.16 0.22 0.99 16 6 O -0.39 -5.67 10.34 -35.23 -0.36 -6.04 16 7 C 0.08 1.25 5.23 37.16 0.19 1.44 16 8 C -0.12 -2.05 6.18 -27.88 -0.17 -2.22 16 9 C 0.47 10.64 7.34 36.01 0.26 10.90 16 10 O -0.51 -12.82 14.20 -18.75 -0.27 -13.09 16 11 O -0.33 -8.37 9.83 -39.27 -0.39 -8.76 16 12 C 0.23 5.88 0.33 -90.95 -0.03 5.85 16 13 C -0.52 -14.41 7.16 -34.44 -0.25 -14.66 16 14 H 0.06 1.85 7.82 -52.48 -0.41 1.44 16 15 C 0.07 2.05 5.38 -17.82 -0.10 1.95 16 16 N -0.87 -24.53 12.79 55.43 0.71 -23.82 16 17 Si 0.89 21.48 29.54 -169.99 -5.02 16.46 16 18 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 19 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 20 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 21 C -0.15 -3.33 6.97 -25.82 -0.18 -3.51 16 22 C -0.15 -2.96 8.03 -25.82 -0.21 -3.17 16 23 C -0.10 -2.19 7.08 -25.91 -0.18 -2.37 16 24 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 25 H 0.04 0.24 8.14 -51.93 -0.42 -0.19 16 26 H 0.04 0.24 8.14 -51.92 -0.42 -0.18 16 27 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 29 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.06 0.88 8.10 -51.93 -0.42 0.46 16 34 H 0.06 1.00 8.10 -51.93 -0.42 0.58 16 35 H 0.10 1.80 8.14 -51.93 -0.42 1.38 16 36 H 0.10 1.53 8.14 -51.93 -0.42 1.11 16 37 H 0.26 7.10 8.32 -40.82 -0.34 6.76 16 38 H 0.08 1.73 8.09 -51.93 -0.42 1.31 16 39 H 0.05 1.08 7.55 -51.93 -0.39 0.69 16 40 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 41 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 42 H 0.06 1.49 8.14 -51.93 -0.42 1.06 16 43 H 0.08 1.87 8.09 -51.93 -0.42 1.45 16 LS Contribution 361.33 15.07 5.45 5.45 Total: -1.00 -31.66 361.33 -7.06 -38.72 By element: Atomic # 1 Polarization: 7.03 SS G_CDS: -7.54 Total: -0.51 kcal Atomic # 6 Polarization: -4.80 SS G_CDS: 0.74 Total: -4.07 kcal Atomic # 7 Polarization: -24.53 SS G_CDS: 0.71 Total: -23.82 kcal Atomic # 8 Polarization: -30.85 SS G_CDS: -1.39 Total: -32.24 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -31.66 -7.06 -38.72 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001343476047.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -126.696 kcal (2) G-P(sol) polarization free energy of solvation -31.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.725 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds