Wall clock time and date at job start Tue Mar 31 2020 06:01:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42899 * 114.00023 * 2 1 4 4 C 1.52996 * 109.46758 * 179.97438 * 3 2 1 5 5 C 1.53005 * 109.47147 * 179.97438 * 4 3 2 6 6 O 1.42894 * 109.47303 * 179.97438 * 5 4 3 7 7 C 1.42900 * 114.00357 * 180.02562 * 6 5 4 8 8 C 1.52999 * 109.47458 * 180.02562 * 7 6 5 9 9 C 1.50703 * 109.46850 * 179.97438 * 8 7 6 10 10 O 1.20824 * 120.00159 * 0.02562 * 9 8 7 11 11 O 1.34233 * 119.99694 * 179.97438 * 9 8 7 12 12 C 1.45191 * 116.99742 * 185.11513 * 11 9 8 13 13 C 1.50701 * 112.85371 * 296.94574 * 12 11 9 14 14 H 1.08004 * 119.99923 * 115.13254 * 13 12 11 15 15 C 1.37877 * 119.99806 * 295.41590 * 13 12 11 16 16 N 1.31512 * 120.00075 * 4.92997 * 15 13 12 17 17 Si 1.86803 * 119.99926 * 184.94296 * 15 13 12 18 18 H 1.48502 * 109.47197 * 59.99063 * 17 15 13 19 19 H 1.48496 * 109.47285 * 179.97438 * 17 15 13 20 20 H 1.48506 * 109.46697 * 299.99390 * 17 15 13 21 21 C 1.53785 * 113.61631 * 68.14533 * 12 11 9 22 22 C 1.53959 * 87.02053 * 89.22699 * 21 12 11 23 23 C 1.53784 * 87.11062 * 25.36457 * 22 21 12 24 24 H 1.08996 * 109.47611 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.47201 * 300.00323 * 1 2 3 26 26 H 1.09007 * 109.46625 * 59.99886 * 1 2 3 27 27 H 1.09001 * 109.46958 * 59.99766 * 3 2 1 28 28 H 1.08996 * 109.47352 * 299.99518 * 3 2 1 29 29 H 1.09001 * 109.47385 * 60.00262 * 4 3 2 30 30 H 1.09004 * 109.47314 * 300.00001 * 4 3 2 31 31 H 1.09001 * 109.46625 * 59.99967 * 5 4 3 32 32 H 1.08990 * 109.47022 * 300.00290 * 5 4 3 33 33 H 1.09000 * 109.46574 * 60.00182 * 7 6 5 34 34 H 1.09003 * 109.46862 * 300.00507 * 7 6 5 35 35 H 1.08995 * 109.47129 * 59.99878 * 8 7 6 36 36 H 1.08995 * 109.46911 * 299.99977 * 8 7 6 37 37 H 0.96998 * 120.00027 * 185.00155 * 16 15 13 38 38 H 1.08993 * 113.61470 * 203.74528 * 21 12 11 39 39 H 1.08997 * 113.61498 * 334.64983 * 21 12 11 40 40 H 1.08997 * 113.53953 * 270.81115 * 22 21 12 41 41 H 1.09001 * 113.74435 * 139.94021 * 22 21 12 42 42 H 1.09002 * 113.61550 * 220.09147 * 23 22 21 43 43 H 1.09001 * 113.69217 * 89.19816 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1845 0.0006 5 6 4.1579 2.5823 0.0000 6 8 5.5823 2.4694 0.0012 7 6 6.2650 3.7248 0.0013 8 6 7.7759 3.4839 0.0020 9 6 8.4956 4.8079 0.0015 10 8 7.8648 5.8384 0.0011 11 8 9.8375 4.8423 0.0024 12 6 10.4633 6.1474 0.1172 13 6 10.1458 7.0529 -1.0448 14 1 9.5725 7.9544 -0.8860 15 6 10.5821 6.7276 -2.3116 16 7 11.1906 5.5811 -2.5232 17 14 10.3093 7.9155 -3.7272 18 1 10.9904 9.2017 -3.4324 19 1 10.8673 7.3350 -4.9750 20 1 8.8537 8.1542 -3.8995 21 6 10.2575 6.8108 1.4893 22 6 11.5457 6.0969 1.9379 23 6 11.9617 6.0843 0.4575 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5139 -0.8901 27 1 1.6886 1.8464 0.8900 28 1 1.6887 1.8463 -0.8900 29 1 3.8574 0.6435 -0.8891 30 1 3.8567 0.6438 0.8909 31 1 3.8359 3.1237 0.8896 32 1 3.8366 3.1226 -0.8903 33 1 5.9863 4.2897 0.8909 34 1 5.9877 4.2891 -0.8891 35 1 8.0541 2.9191 -0.8877 36 1 8.0533 2.9194 0.8921 37 1 11.5618 5.3831 -3.3972 38 1 10.3456 7.8969 1.4667 39 1 9.3634 6.4683 2.0101 40 1 11.3715 5.1034 2.3510 41 1 12.1907 6.7099 2.5675 42 1 12.4413 5.1562 0.1465 43 1 12.5168 6.9710 0.1510 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001343476047.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:32 Heat of formation + Delta-G solvation = -184.385685 kcal Electronic energy + Delta-G solvation = -22710.616067 eV Core-core repulsion = 19142.204492 eV Total energy + Delta-G solvation = -3568.411576 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 286.166 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.27368 -39.49957 -38.93413 -38.46536 -35.93610 -34.43153 -34.19876 -32.21359 -28.52285 -27.95869 -26.38140 -26.05650 -25.15616 -24.04668 -22.65372 -21.53530 -20.00280 -19.11208 -18.13358 -17.71947 -17.32663 -17.09925 -16.79837 -16.73665 -16.58709 -16.24300 -15.72729 -15.58935 -15.26466 -14.98124 -14.77241 -13.91643 -13.67632 -13.44397 -13.25790 -13.03246 -12.84437 -12.78762 -12.66396 -12.61296 -12.34654 -12.27534 -11.99952 -11.94492 -11.92726 -11.81715 -11.66861 -11.13475 -10.77780 -10.65674 -10.63973 -10.47941 -10.28809 -8.16384 -6.33245 1.36032 1.37623 1.45355 1.66139 1.89567 2.37756 2.58290 3.10170 3.28232 3.79245 3.91076 3.97605 3.98561 4.03055 4.10469 4.16058 4.27303 4.36209 4.39367 4.44155 4.47790 4.54376 4.55585 4.59390 4.72709 4.75441 4.80110 4.85878 4.86978 5.05325 5.08132 5.09645 5.12199 5.36590 5.52100 5.65113 5.75282 5.98020 6.10244 6.21927 6.42661 6.69634 7.28946 7.42479 8.87111 Molecular weight = 286.17amu Principal moments of inertia in cm(-1) A = 0.021382 B = 0.002979 C = 0.002739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1309.222976 B = 9396.716442 C =10220.548667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.418 6.418 3 C 0.065 3.935 4 C -0.113 4.113 5 C 0.062 3.938 6 O -0.399 6.399 7 C 0.089 3.911 8 C -0.107 4.107 9 C 0.457 3.543 10 O -0.540 6.540 11 O -0.348 6.348 12 C 0.207 3.793 13 C -0.535 4.535 14 H 0.045 0.955 15 C 0.031 3.969 16 N -0.889 5.889 17 Si 0.945 3.055 18 H -0.264 1.264 19 H -0.278 1.278 20 H -0.283 1.283 21 C -0.149 4.149 22 C -0.125 4.125 23 C -0.098 4.098 24 H 0.096 0.904 25 H 0.052 0.948 26 H 0.050 0.950 27 H 0.065 0.935 28 H 0.061 0.939 29 H 0.070 0.930 30 H 0.075 0.925 31 H 0.065 0.935 32 H 0.058 0.942 33 H 0.062 0.938 34 H 0.047 0.953 35 H 0.107 0.893 36 H 0.126 0.874 37 H 0.263 0.737 38 H 0.081 0.919 39 H 0.047 0.953 40 H 0.080 0.920 41 H 0.086 0.914 42 H 0.049 0.951 43 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.415 -8.006 6.632 17.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.338 6.338 3 C -0.011 4.011 4 C -0.151 4.151 5 C -0.015 4.015 6 O -0.319 6.319 7 C 0.013 3.987 8 C -0.145 4.145 9 C 0.301 3.699 10 O -0.431 6.431 11 O -0.263 6.263 12 C 0.172 3.828 13 C -0.572 4.572 14 H 0.064 0.936 15 C -0.172 4.172 16 N -0.527 5.527 17 Si 0.770 3.230 18 H -0.189 1.189 19 H -0.203 1.203 20 H -0.208 1.208 21 C -0.187 4.187 22 C -0.163 4.163 23 C -0.136 4.136 24 H 0.115 0.885 25 H 0.071 0.929 26 H 0.069 0.931 27 H 0.083 0.917 28 H 0.080 0.920 29 H 0.089 0.911 30 H 0.093 0.907 31 H 0.084 0.916 32 H 0.077 0.923 33 H 0.080 0.920 34 H 0.066 0.934 35 H 0.125 0.875 36 H 0.144 0.856 37 H 0.073 0.927 38 H 0.099 0.901 39 H 0.066 0.934 40 H 0.099 0.901 41 H 0.105 0.895 42 H 0.068 0.932 43 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -14.311 -8.162 6.478 17.703 hybrid contribution -0.392 1.212 -1.154 1.719 sum -14.703 -6.949 5.324 17.112 Atomic orbital electron populations 1.22941 0.79236 1.03899 1.00998 1.87825 1.21687 1.28635 1.95661 1.22388 0.92453 0.84655 1.01618 1.21306 0.93618 0.96132 1.04045 1.22460 0.79787 0.97558 1.01646 1.87749 1.19334 1.29141 1.95687 1.21951 0.90193 0.85151 1.01442 1.21104 0.93449 0.92645 1.07289 1.23528 0.82327 0.91724 0.72336 1.90544 1.68430 1.37324 1.46851 1.86374 1.20354 1.38219 1.81396 1.20905 0.91356 0.78092 0.92399 1.21369 1.35517 1.07130 0.93214 0.93627 1.25706 0.94685 0.96130 1.00629 1.70126 1.36832 1.21869 1.23844 0.85829 0.78156 0.79979 0.79006 1.18921 1.20305 1.20844 1.23418 0.97585 1.00316 0.97331 1.22892 0.96688 1.00602 0.96071 1.22694 0.95226 1.00768 0.94868 0.88547 0.92945 0.93140 0.91683 0.92046 0.91135 0.90663 0.91639 0.92346 0.91975 0.93424 0.87463 0.85577 0.92748 0.90054 0.93373 0.90105 0.89533 0.93167 0.90418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 11.01 113.37 1.25 1.55 16 2 O -0.42 -7.97 10.70 -148.98 -1.59 -9.57 16 3 C 0.07 1.05 5.94 71.98 0.43 1.48 16 4 C -0.11 -2.18 5.95 30.59 0.18 -2.00 16 5 C 0.06 1.30 5.94 71.98 0.43 1.73 16 6 O -0.40 -11.11 10.34 -148.98 -1.54 -12.65 16 7 C 0.09 2.75 5.23 71.98 0.38 3.12 16 8 C -0.11 -3.66 6.18 29.85 0.18 -3.47 16 9 C 0.46 20.85 7.34 71.24 0.52 21.37 16 10 O -0.54 -27.35 14.20 21.97 0.31 -27.04 16 11 O -0.35 -17.48 9.83 -51.45 -0.51 -17.98 16 12 C 0.21 10.44 0.33 -11.01 0.00 10.44 16 13 C -0.53 -30.19 7.16 25.60 0.18 -30.00 16 14 H 0.05 2.67 7.82 -2.91 -0.02 2.65 16 15 C 0.03 1.75 5.38 84.65 0.46 2.20 16 16 N -0.89 -50.87 12.79 21.45 0.27 -50.59 16 17 Si 0.94 44.40 29.54 68.60 2.03 46.43 16 18 H -0.26 -11.89 7.11 99.48 0.71 -11.18 16 19 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 20 H -0.28 -13.50 7.11 99.48 0.71 -12.79 16 21 C -0.15 -6.39 6.97 31.18 0.22 -6.17 16 22 C -0.13 -4.58 8.03 31.18 0.25 -4.33 16 23 C -0.10 -4.41 7.08 31.12 0.22 -4.19 16 24 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 25 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16 26 H 0.05 0.50 8.14 -2.38 -0.02 0.48 16 27 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 28 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 29 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 30 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 31 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 32 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 33 H 0.06 1.85 8.10 -2.39 -0.02 1.83 16 34 H 0.05 1.57 8.10 -2.39 -0.02 1.55 16 35 H 0.11 3.62 8.14 -2.39 -0.02 3.61 16 36 H 0.13 3.63 8.14 -2.39 -0.02 3.61 16 37 H 0.26 14.35 8.32 -92.71 -0.77 13.58 16 38 H 0.08 3.43 8.09 -2.39 -0.02 3.41 16 39 H 0.05 2.05 7.55 -2.39 -0.02 2.03 16 40 H 0.08 2.77 8.14 -2.39 -0.02 2.75 16 41 H 0.09 2.61 8.14 -2.39 -0.02 2.59 16 42 H 0.05 2.35 8.14 -2.39 -0.02 2.33 16 43 H 0.08 3.50 8.09 -2.39 -0.02 3.48 16 Total: -1.00 -67.97 361.33 4.62 -63.35 By element: Atomic # 1 Polarization: 15.38 SS G_CDS: 0.96 Total: 16.34 kcal Atomic # 6 Polarization: -12.98 SS G_CDS: 4.69 Total: -8.29 kcal Atomic # 7 Polarization: -50.87 SS G_CDS: 0.27 Total: -50.59 kcal Atomic # 8 Polarization: -63.91 SS G_CDS: -3.33 Total: -67.24 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 2.03 Total: 46.43 kcal Total: -67.97 4.62 -63.35 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001343476047.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -121.035 kcal (2) G-P(sol) polarization free energy of solvation -67.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -189.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.351 kcal (6) G-S(sol) free energy of system = (1) + (5) -184.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds