Wall clock time and date at job start Tue Mar 31 2020 06:03:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42901 * 113.99510 * 2 1 4 4 H 1.09001 * 109.47260 * 29.99844 * 3 2 1 5 5 C 1.53003 * 109.46901 * 269.99674 * 3 2 1 6 6 O 1.45198 * 109.47321 * 65.00040 * 5 3 2 7 7 C 1.34224 * 117.00113 * 180.02562 * 6 5 3 8 8 O 1.20821 * 120.00345 * 359.97438 * 7 6 5 9 9 C 1.50708 * 120.00069 * 180.02562 * 7 6 5 10 10 C 1.53000 * 109.47218 * 180.02562 * 9 7 6 11 11 C 1.50697 * 109.47051 * 179.97438 * 10 9 7 12 12 H 1.07998 * 120.00191 * 0.02562 * 11 10 9 13 13 C 1.37874 * 119.99928 * 179.97438 * 11 10 9 14 14 N 1.31513 * 120.00289 * 179.97438 * 13 11 10 15 15 Si 1.86804 * 119.99990 * 0.02562 * 13 11 10 16 16 H 1.48497 * 109.46983 * 89.99711 * 15 13 11 17 17 H 1.48503 * 109.46786 * 209.99701 * 15 13 11 18 18 H 1.48501 * 109.47041 * 329.99479 * 15 13 11 19 19 C 1.53002 * 109.47385 * 149.99806 * 3 2 1 20 20 C 1.53177 * 109.53875 * 299.99884 * 19 3 2 21 21 C 1.53096 * 109.16164 * 183.14936 * 20 19 3 22 22 O 1.42908 * 109.41214 * 57.60571 * 21 20 19 23 23 C 1.42897 * 114.09789 * 298.84248 * 22 21 20 24 24 C 1.53090 * 109.41529 * 61.15937 * 23 22 21 25 25 H 1.08998 * 109.47787 * 300.00249 * 1 2 3 26 26 H 1.08996 * 109.47209 * 60.00723 * 1 2 3 27 27 H 1.09008 * 109.46535 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47008 * 185.00354 * 5 3 2 29 29 H 1.08997 * 109.47195 * 305.00262 * 5 3 2 30 30 H 1.09004 * 109.46477 * 299.99852 * 9 7 6 31 31 H 1.08997 * 109.47124 * 59.99875 * 9 7 6 32 32 H 1.09000 * 109.46783 * 299.99933 * 10 9 7 33 33 H 1.09000 * 109.47103 * 59.99330 * 10 9 7 34 34 H 0.96996 * 120.00291 * 180.02562 * 14 13 11 35 35 H 1.09002 * 109.61364 * 60.21527 * 19 3 2 36 36 H 1.09003 * 109.52410 * 63.24757 * 20 19 3 37 37 H 1.08994 * 109.57348 * 303.08372 * 20 19 3 38 38 H 1.08993 * 109.48033 * 177.59323 * 21 20 19 39 39 H 1.09001 * 109.48095 * 297.62604 * 21 20 19 40 40 H 1.09002 * 109.48246 * 301.17405 * 23 22 21 41 41 H 1.09006 * 109.47919 * 181.14281 * 23 22 21 42 42 H 1.09002 * 109.52149 * 182.47952 * 24 23 22 43 43 H 1.09007 * 109.52293 * 62.29456 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 1 1.3448 1.9994 0.5138 5 6 2.2176 1.7714 -1.4425 6 8 0.9279 1.9250 -2.0918 7 6 0.9343 2.3304 -3.3713 8 8 1.9827 2.5502 -3.9303 9 6 -0.3663 2.5126 -4.1105 10 6 -0.0798 2.9761 -5.5402 11 6 -1.3804 3.1577 -6.2795 12 1 -2.3176 2.9626 -5.7796 13 6 -1.3738 3.5741 -7.5939 14 7 -2.5088 3.7321 -8.2393 15 14 0.2472 3.9124 -8.4584 16 1 0.7298 2.6682 -9.1097 17 1 0.0492 4.9649 -9.4871 18 1 1.2509 4.3730 -7.4657 19 6 3.3588 1.2635 0.7213 20 6 3.1529 0.7972 2.1658 21 6 4.4949 0.8336 2.9017 22 8 5.0307 2.1573 2.8473 23 6 5.2882 2.6286 1.5231 24 6 3.9781 2.6643 0.7319 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3633 -1.0278 0.0005 28 1 2.7412 2.7274 -1.4439 29 1 2.8098 1.0319 -1.9815 30 1 -0.9049 1.5653 -4.1371 31 1 -0.9725 3.2610 -3.6002 32 1 0.4590 3.9233 -5.5139 33 1 0.5263 2.2274 -6.0503 34 1 -2.5042 4.0247 -9.1641 35 1 4.0274 0.5731 0.2071 36 1 2.7638 -0.2210 2.1680 37 1 2.4454 1.4587 2.6657 38 1 4.3470 0.5437 3.9419 39 1 5.1891 0.1407 2.4262 40 1 5.9928 1.9592 1.0296 41 1 5.7119 3.6319 1.5703 42 1 4.1791 2.9816 -0.2914 43 1 3.2875 3.3644 1.2022 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001346176634.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:09 Heat of formation + Delta-G solvation = -200.973430 kcal Electronic energy + Delta-G solvation = -23111.122508 eV Core-core repulsion = 19541.991633 eV Total energy + Delta-G solvation = -3569.130874 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 286.166 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.43640 -39.74899 -38.14287 -36.10356 -34.62882 -33.65264 -31.59222 -31.44208 -29.93608 -27.05865 -26.29068 -25.19165 -23.83200 -22.15959 -21.57958 -20.51213 -19.79994 -17.63131 -17.19909 -16.93167 -16.49044 -16.32908 -16.03145 -15.91272 -15.18752 -15.07601 -14.68524 -14.20501 -14.11648 -13.93364 -13.70681 -12.96466 -12.77050 -12.63649 -12.56474 -12.37682 -12.09990 -11.73342 -11.61522 -11.47221 -11.15540 -11.04986 -10.93109 -10.68754 -10.45026 -10.35539 -10.21463 -10.06549 -9.97729 -9.80428 -9.50801 -9.28905 -8.58304 -6.09809 -4.09888 2.65375 2.88708 3.32259 3.39255 3.41283 3.48116 3.55831 4.25653 4.39533 4.43818 4.48853 4.60661 4.76153 4.81011 4.90421 5.00955 5.07974 5.19505 5.22752 5.24902 5.27874 5.34263 5.37858 5.42099 5.46892 5.49350 5.64140 5.69192 5.74315 5.78947 5.92987 5.94986 5.98322 6.44136 6.74792 6.83332 6.96620 7.20494 7.27597 7.67885 8.16437 8.44048 8.92237 9.51922 11.02751 Molecular weight = 286.17amu Principal moments of inertia in cm(-1) A = 0.030264 B = 0.003013 C = 0.002802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 924.961884 B = 9291.256858 C = 9992.127002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.380 6.380 3 C 0.100 3.900 4 H 0.073 0.927 5 C 0.039 3.961 6 O -0.363 6.363 7 C 0.457 3.543 8 O -0.511 6.511 9 C -0.095 4.095 10 C -0.002 4.002 11 C -0.528 4.528 12 H 0.075 0.925 13 C 0.071 3.929 14 N -0.900 5.900 15 Si 0.877 3.123 16 H -0.276 1.276 17 H -0.287 1.287 18 H -0.262 1.262 19 C -0.083 4.083 20 C -0.145 4.145 21 C 0.060 3.940 22 O -0.385 6.385 23 C 0.063 3.937 24 C -0.158 4.158 25 H 0.038 0.962 26 H 0.061 0.939 27 H 0.083 0.917 28 H 0.077 0.923 29 H 0.075 0.925 30 H 0.098 0.902 31 H 0.098 0.902 32 H 0.025 0.975 33 H 0.021 0.979 34 H 0.265 0.735 35 H 0.084 0.916 36 H 0.083 0.917 37 H 0.071 0.929 38 H 0.094 0.906 39 H 0.051 0.949 40 H 0.052 0.948 41 H 0.096 0.904 42 H 0.081 0.919 43 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.216 -5.946 23.136 26.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.298 6.298 3 C 0.042 3.958 4 H 0.091 0.909 5 C -0.036 4.036 6 O -0.281 6.281 7 C 0.301 3.699 8 O -0.398 6.398 9 C -0.133 4.133 10 C -0.039 4.039 11 C -0.565 4.565 12 H 0.093 0.907 13 C -0.131 4.131 14 N -0.538 5.538 15 Si 0.704 3.296 16 H -0.201 1.201 17 H -0.213 1.213 18 H -0.186 1.186 19 C -0.102 4.102 20 C -0.183 4.183 21 C -0.016 4.016 22 O -0.303 6.303 23 C -0.014 4.014 24 C -0.195 4.195 25 H 0.057 0.943 26 H 0.079 0.921 27 H 0.102 0.898 28 H 0.096 0.904 29 H 0.093 0.907 30 H 0.116 0.884 31 H 0.116 0.884 32 H 0.044 0.956 33 H 0.039 0.961 34 H 0.074 0.926 35 H 0.102 0.898 36 H 0.102 0.898 37 H 0.090 0.910 38 H 0.112 0.888 39 H 0.069 0.931 40 H 0.070 0.930 41 H 0.114 0.886 42 H 0.099 0.901 43 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 12.622 -5.890 22.977 26.869 hybrid contribution 0.575 0.238 -0.974 1.156 sum 13.198 -5.652 22.003 26.273 Atomic orbital electron populations 1.22911 0.80214 1.02684 1.01033 1.87853 1.20534 1.26560 1.94882 1.22147 0.95191 0.85711 0.92750 0.90941 1.23700 0.84544 1.02041 0.93269 1.86538 1.34326 1.79182 1.28012 1.24762 0.93669 0.72153 0.79348 1.90615 1.34510 1.46854 1.67814 1.21547 0.90179 1.04234 0.97328 1.19477 0.98098 0.97055 0.89302 1.21021 0.92211 1.46394 0.96902 0.90659 1.24955 0.96309 0.94566 0.97267 1.69899 1.25699 1.47037 1.11206 0.86802 0.84649 0.78456 0.79676 1.20145 1.21290 1.18626 1.21185 0.95144 0.97687 0.96198 1.22151 0.98439 1.03178 0.94508 1.22606 0.93637 0.84163 1.01236 1.87936 1.83822 1.31444 1.27141 1.22562 0.95393 1.00254 0.83176 1.22363 0.98591 0.96700 1.01870 0.94295 0.92062 0.89843 0.90447 0.90712 0.88379 0.88354 0.95630 0.96066 0.92570 0.89799 0.89797 0.91043 0.88759 0.93080 0.92967 0.88556 0.90098 0.90424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 10.71 101.05 1.08 1.36 16 2 O -0.38 -4.38 9.74 -38.80 -0.38 -4.76 16 3 C 0.10 1.05 2.08 -26.73 -0.06 0.99 16 4 H 0.07 0.72 7.79 -51.93 -0.40 0.32 16 5 C 0.04 0.50 4.92 37.16 0.18 0.68 16 6 O -0.36 -5.59 8.33 -42.01 -0.35 -5.94 16 7 C 0.46 8.45 7.96 36.01 0.29 8.73 16 8 O -0.51 -10.87 15.73 -18.75 -0.29 -11.17 16 9 C -0.10 -1.84 5.75 -27.88 -0.16 -2.00 16 10 C 0.00 -0.04 3.33 -27.88 -0.09 -0.14 16 11 C -0.53 -14.81 9.66 -34.44 -0.33 -15.14 16 12 H 0.08 2.21 7.99 -52.49 -0.42 1.79 16 13 C 0.07 2.06 5.47 -17.82 -0.10 1.97 16 14 N -0.90 -27.50 13.96 55.43 0.77 -26.73 16 15 Si 0.88 22.12 27.47 -169.99 -4.67 17.45 16 16 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 17 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 18 H -0.26 -6.53 6.54 56.52 0.37 -6.16 16 19 C -0.08 -0.72 2.07 -90.44 -0.19 -0.90 16 20 C -0.15 -1.12 5.23 -26.59 -0.14 -1.25 16 21 C 0.06 0.44 6.84 37.21 0.25 0.70 16 22 O -0.38 -3.56 10.77 -35.23 -0.38 -3.94 16 23 C 0.06 0.48 6.84 37.20 0.25 0.73 16 24 C -0.16 -1.25 4.99 -26.60 -0.13 -1.38 16 25 H 0.04 0.33 8.08 -51.93 -0.42 -0.09 16 26 H 0.06 0.70 6.37 -51.93 -0.33 0.37 16 27 H 0.08 0.72 8.14 -51.92 -0.42 0.30 16 28 H 0.08 0.94 6.26 -51.93 -0.32 0.62 16 29 H 0.07 1.02 8.13 -51.93 -0.42 0.60 16 30 H 0.10 1.76 8.14 -51.93 -0.42 1.33 16 31 H 0.10 1.75 8.14 -51.93 -0.42 1.33 16 32 H 0.03 0.64 7.16 -51.93 -0.37 0.27 16 33 H 0.02 0.53 7.53 -51.93 -0.39 0.14 16 34 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 35 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.08 0.64 7.79 -51.93 -0.40 0.24 16 37 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 40 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 41 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.08 0.63 6.52 -51.93 -0.34 0.29 16 43 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 LS Contribution 345.95 15.07 5.21 5.21 Total: -1.00 -32.80 345.95 -6.44 -39.24 By element: Atomic # 1 Polarization: 3.50 SS G_CDS: -7.22 Total: -3.72 kcal Atomic # 6 Polarization: -6.51 SS G_CDS: 0.86 Total: -5.65 kcal Atomic # 7 Polarization: -27.50 SS G_CDS: 0.77 Total: -26.73 kcal Atomic # 8 Polarization: -24.40 SS G_CDS: -1.40 Total: -25.80 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -4.67 Total: 17.45 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -32.80 -6.44 -39.24 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001346176634.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -161.733 kcal (2) G-P(sol) polarization free energy of solvation -32.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -194.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.241 kcal (6) G-S(sol) free energy of system = (1) + (5) -200.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds