Wall clock time and date at job start Tue Mar 31 2020 06:03:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42901 * 113.99510 * 2 1 4 4 H 1.09001 * 109.47260 * 29.99844 * 3 2 1 5 5 C 1.53003 * 109.46901 * 269.99674 * 3 2 1 6 6 O 1.45198 * 109.47321 * 65.00040 * 5 3 2 7 7 C 1.34224 * 117.00113 * 180.02562 * 6 5 3 8 8 O 1.20821 * 120.00345 * 359.97438 * 7 6 5 9 9 C 1.50708 * 120.00069 * 180.02562 * 7 6 5 10 10 C 1.53000 * 109.47218 * 180.02562 * 9 7 6 11 11 C 1.50697 * 109.47051 * 179.97438 * 10 9 7 12 12 H 1.07998 * 120.00191 * 0.02562 * 11 10 9 13 13 C 1.37874 * 119.99928 * 179.97438 * 11 10 9 14 14 N 1.31513 * 120.00289 * 179.97438 * 13 11 10 15 15 Si 1.86804 * 119.99990 * 0.02562 * 13 11 10 16 16 H 1.48497 * 109.46983 * 89.99711 * 15 13 11 17 17 H 1.48503 * 109.46786 * 209.99701 * 15 13 11 18 18 H 1.48501 * 109.47041 * 329.99479 * 15 13 11 19 19 C 1.53002 * 109.47385 * 149.99806 * 3 2 1 20 20 C 1.53177 * 109.53875 * 299.99884 * 19 3 2 21 21 C 1.53096 * 109.16164 * 183.14936 * 20 19 3 22 22 O 1.42908 * 109.41214 * 57.60571 * 21 20 19 23 23 C 1.42897 * 114.09789 * 298.84248 * 22 21 20 24 24 C 1.53090 * 109.41529 * 61.15937 * 23 22 21 25 25 H 1.08998 * 109.47787 * 300.00249 * 1 2 3 26 26 H 1.08996 * 109.47209 * 60.00723 * 1 2 3 27 27 H 1.09008 * 109.46535 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47008 * 185.00354 * 5 3 2 29 29 H 1.08997 * 109.47195 * 305.00262 * 5 3 2 30 30 H 1.09004 * 109.46477 * 299.99852 * 9 7 6 31 31 H 1.08997 * 109.47124 * 59.99875 * 9 7 6 32 32 H 1.09000 * 109.46783 * 299.99933 * 10 9 7 33 33 H 1.09000 * 109.47103 * 59.99330 * 10 9 7 34 34 H 0.96996 * 120.00291 * 180.02562 * 14 13 11 35 35 H 1.09002 * 109.61364 * 60.21527 * 19 3 2 36 36 H 1.09003 * 109.52410 * 63.24757 * 20 19 3 37 37 H 1.08994 * 109.57348 * 303.08372 * 20 19 3 38 38 H 1.08993 * 109.48033 * 177.59323 * 21 20 19 39 39 H 1.09001 * 109.48095 * 297.62604 * 21 20 19 40 40 H 1.09002 * 109.48246 * 301.17405 * 23 22 21 41 41 H 1.09006 * 109.47919 * 181.14281 * 23 22 21 42 42 H 1.09002 * 109.52149 * 182.47952 * 24 23 22 43 43 H 1.09007 * 109.52293 * 62.29456 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 1 1.3448 1.9994 0.5138 5 6 2.2176 1.7714 -1.4425 6 8 0.9279 1.9250 -2.0918 7 6 0.9343 2.3304 -3.3713 8 8 1.9827 2.5502 -3.9303 9 6 -0.3663 2.5126 -4.1105 10 6 -0.0798 2.9761 -5.5402 11 6 -1.3804 3.1577 -6.2795 12 1 -2.3176 2.9626 -5.7796 13 6 -1.3738 3.5741 -7.5939 14 7 -2.5088 3.7321 -8.2393 15 14 0.2472 3.9124 -8.4584 16 1 0.7298 2.6682 -9.1097 17 1 0.0492 4.9649 -9.4871 18 1 1.2509 4.3730 -7.4657 19 6 3.3588 1.2635 0.7213 20 6 3.1529 0.7972 2.1658 21 6 4.4949 0.8336 2.9017 22 8 5.0307 2.1573 2.8473 23 6 5.2882 2.6286 1.5231 24 6 3.9781 2.6643 0.7319 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3633 -1.0278 0.0005 28 1 2.7412 2.7274 -1.4439 29 1 2.8098 1.0319 -1.9815 30 1 -0.9049 1.5653 -4.1371 31 1 -0.9725 3.2610 -3.6002 32 1 0.4590 3.9233 -5.5139 33 1 0.5263 2.2274 -6.0503 34 1 -2.5042 4.0247 -9.1641 35 1 4.0274 0.5731 0.2071 36 1 2.7638 -0.2210 2.1680 37 1 2.4454 1.4587 2.6657 38 1 4.3470 0.5437 3.9419 39 1 5.1891 0.1407 2.4262 40 1 5.9928 1.9592 1.0296 41 1 5.7119 3.6319 1.5703 42 1 4.1791 2.9816 -0.2914 43 1 3.2875 3.3644 1.2022 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001346176634.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:09 Heat of formation + Delta-G solvation = -221.539594 kcal Electronic energy + Delta-G solvation = -23112.014323 eV Core-core repulsion = 19541.991633 eV Total energy + Delta-G solvation = -3570.022690 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 286.166 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.65549 -40.62144 -39.00990 -37.43806 -35.65272 -35.35500 -33.47370 -32.13479 -30.87245 -28.55544 -27.42284 -26.07237 -24.48753 -23.68997 -22.60989 -21.53180 -21.06092 -19.37805 -18.46352 -18.19242 -17.44632 -17.28699 -17.10372 -16.87320 -16.31316 -15.93762 -15.88109 -15.57559 -15.35133 -14.90410 -14.71725 -14.53544 -14.14293 -13.95797 -13.41884 -13.32243 -13.22418 -13.01716 -12.92707 -12.45376 -12.26684 -12.25812 -12.04826 -11.98660 -11.81436 -11.66926 -11.54289 -11.47171 -11.41952 -11.25575 -10.80308 -10.71870 -10.39065 -8.33186 -6.37493 1.18128 1.33320 1.35437 1.48825 1.60844 2.33216 2.63716 2.98434 3.02214 3.44315 3.64894 3.79566 3.88618 3.93445 4.02355 4.08105 4.22112 4.29259 4.30860 4.35996 4.39970 4.46181 4.55282 4.63207 4.67649 4.71160 4.79417 4.81210 4.87301 4.89539 4.96085 5.09012 5.15998 5.23814 5.29874 5.34035 5.34605 5.57245 6.14360 6.19741 6.26182 6.66978 6.76810 7.27799 8.82329 Molecular weight = 286.17amu Principal moments of inertia in cm(-1) A = 0.030264 B = 0.003013 C = 0.002802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 924.961884 B = 9291.256858 C = 9992.127002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.392 6.392 3 C 0.106 3.894 4 H 0.080 0.920 5 C 0.034 3.966 6 O -0.353 6.353 7 C 0.467 3.533 8 O -0.541 6.541 9 C -0.091 4.091 10 C 0.002 3.998 11 C -0.532 4.532 12 H 0.052 0.948 13 C 0.015 3.985 14 N -0.942 5.942 15 Si 0.939 3.061 16 H -0.268 1.268 17 H -0.279 1.279 18 H -0.258 1.258 19 C -0.080 4.080 20 C -0.139 4.139 21 C 0.058 3.942 22 O -0.403 6.403 23 C 0.060 3.940 24 C -0.155 4.155 25 H 0.054 0.946 26 H 0.045 0.955 27 H 0.096 0.904 28 H 0.086 0.914 29 H 0.066 0.934 30 H 0.113 0.887 31 H 0.115 0.885 32 H 0.017 0.983 33 H 0.014 0.986 34 H 0.268 0.732 35 H 0.082 0.918 36 H 0.085 0.915 37 H 0.070 0.930 38 H 0.107 0.893 39 H 0.057 0.943 40 H 0.058 0.942 41 H 0.106 0.894 42 H 0.080 0.920 43 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.488 -6.208 24.475 28.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.311 6.311 3 C 0.048 3.952 4 H 0.098 0.902 5 C -0.040 4.040 6 O -0.270 6.270 7 C 0.312 3.688 8 O -0.431 6.431 9 C -0.128 4.128 10 C -0.036 4.036 11 C -0.569 4.569 12 H 0.070 0.930 13 C -0.183 4.183 14 N -0.582 5.582 15 Si 0.763 3.237 16 H -0.193 1.193 17 H -0.204 1.204 18 H -0.182 1.182 19 C -0.099 4.099 20 C -0.177 4.177 21 C -0.018 4.018 22 O -0.322 6.322 23 C -0.016 4.016 24 C -0.193 4.193 25 H 0.073 0.927 26 H 0.064 0.936 27 H 0.114 0.886 28 H 0.104 0.896 29 H 0.085 0.915 30 H 0.131 0.869 31 H 0.133 0.867 32 H 0.036 0.964 33 H 0.033 0.967 34 H 0.077 0.923 35 H 0.100 0.900 36 H 0.103 0.897 37 H 0.089 0.911 38 H 0.125 0.875 39 H 0.075 0.925 40 H 0.077 0.923 41 H 0.124 0.876 42 H 0.099 0.901 43 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 13.888 -6.166 24.347 28.699 hybrid contribution 0.125 0.275 -1.299 1.334 sum 14.013 -5.891 23.048 27.609 Atomic orbital electron populations 1.23014 0.79557 1.03630 1.01005 1.87847 1.21340 1.27083 1.94795 1.22206 0.96367 0.85511 0.91154 0.90199 1.24019 0.83272 1.02454 0.94276 1.86522 1.35847 1.78275 1.26352 1.24382 0.92624 0.71603 0.80148 1.90607 1.35350 1.48423 1.68739 1.21343 0.91186 1.05398 0.94922 1.19318 0.95740 0.96571 0.91932 1.21330 0.93011 1.45428 0.97170 0.92997 1.25802 0.99587 0.94660 0.98298 1.70015 1.27868 1.48500 1.11824 0.85825 0.80479 0.78717 0.78688 1.19333 1.20405 1.18203 1.21184 0.93988 0.98176 0.96557 1.22098 0.98737 1.03111 0.93735 1.22722 0.93378 0.83630 1.02114 1.87914 1.83996 1.32322 1.27981 1.22658 0.95271 1.01023 0.82646 1.22342 0.98810 0.96176 1.01936 0.92698 0.93627 0.88569 0.89603 0.91542 0.86929 0.86721 0.96427 0.96723 0.92270 0.89994 0.89689 0.91138 0.87460 0.92457 0.92323 0.87585 0.90114 0.90475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.44 10.71 113.37 1.21 1.65 16 2 O -0.39 -8.37 9.74 -145.57 -1.42 -9.79 16 3 C 0.11 2.03 2.08 30.60 0.06 2.09 16 4 H 0.08 1.43 7.79 -2.39 -0.02 1.41 16 5 C 0.03 0.82 4.92 71.98 0.35 1.17 16 6 O -0.35 -10.34 8.33 -48.72 -0.41 -10.74 16 7 C 0.47 16.67 7.96 71.24 0.57 17.24 16 8 O -0.54 -22.49 15.73 21.98 0.35 -22.14 16 9 C -0.09 -3.41 5.75 29.85 0.17 -3.24 16 10 C 0.00 0.10 3.33 29.85 0.10 0.19 16 11 C -0.53 -29.97 9.66 25.60 0.25 -29.72 16 12 H 0.05 3.09 7.99 -2.91 -0.02 3.07 16 13 C 0.01 0.85 5.47 84.65 0.46 1.31 16 14 N -0.94 -58.14 13.96 21.45 0.30 -57.84 16 15 Si 0.94 45.43 27.47 68.60 1.88 47.31 16 16 H -0.27 -12.57 7.11 99.48 0.71 -11.87 16 17 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 18 H -0.26 -12.22 6.54 99.48 0.65 -11.57 16 19 C -0.08 -1.24 2.07 -10.68 -0.02 -1.27 16 20 C -0.14 -1.87 5.23 30.69 0.16 -1.71 16 21 C 0.06 0.74 6.84 72.01 0.49 1.23 16 22 O -0.40 -6.75 10.77 -148.98 -1.60 -8.36 16 23 C 0.06 0.81 6.84 72.01 0.49 1.31 16 24 C -0.15 -2.19 4.99 30.68 0.15 -2.04 16 25 H 0.05 0.82 8.08 -2.39 -0.02 0.80 16 26 H 0.05 0.98 6.37 -2.39 -0.02 0.96 16 27 H 0.10 1.49 8.14 -2.38 -0.02 1.47 16 28 H 0.09 1.96 6.26 -2.39 -0.01 1.95 16 29 H 0.07 1.75 8.13 -2.39 -0.02 1.73 16 30 H 0.11 3.88 8.14 -2.38 -0.02 3.86 16 31 H 0.11 3.91 8.14 -2.39 -0.02 3.89 16 32 H 0.02 0.86 7.16 -2.39 -0.02 0.85 16 33 H 0.01 0.71 7.53 -2.39 -0.02 0.69 16 34 H 0.27 15.46 8.31 -92.71 -0.77 14.69 16 35 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 36 H 0.08 1.14 7.79 -2.39 -0.02 1.12 16 37 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 38 H 0.11 1.06 8.14 -2.39 -0.02 1.04 16 39 H 0.06 0.65 8.14 -2.39 -0.02 0.64 16 40 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 41 H 0.11 1.19 8.14 -2.38 -0.02 1.17 16 42 H 0.08 1.14 6.52 -2.39 -0.02 1.12 16 43 H 0.08 1.10 8.14 -2.38 -0.02 1.08 16 Total: -1.00 -69.07 345.95 4.48 -64.59 By element: Atomic # 1 Polarization: 7.82 SS G_CDS: 0.92 Total: 8.74 kcal Atomic # 6 Polarization: -16.23 SS G_CDS: 4.46 Total: -11.78 kcal Atomic # 7 Polarization: -58.14 SS G_CDS: 0.30 Total: -57.84 kcal Atomic # 8 Polarization: -47.95 SS G_CDS: -3.08 Total: -51.03 kcal Atomic # 14 Polarization: 45.43 SS G_CDS: 1.88 Total: 47.31 kcal Total: -69.07 4.48 -64.59 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001346176634.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -156.948 kcal (2) G-P(sol) polarization free energy of solvation -69.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -226.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.592 kcal (6) G-S(sol) free energy of system = (1) + (5) -221.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds