Wall clock time and date at job start Tue Mar 31 2020 06:09:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.47022 * 2 1 4 4 C 1.50697 * 109.47472 * 240.00052 * 2 1 3 5 5 H 1.07998 * 119.99931 * 240.00254 * 4 2 1 6 6 C 1.37878 * 119.99890 * 59.99239 * 4 2 1 7 7 N 1.31510 * 120.00276 * 0.02562 * 6 4 2 8 8 Si 1.86808 * 119.99883 * 180.02562 * 6 4 2 9 9 H 1.48504 * 109.46815 * 0.02562 * 8 6 4 10 10 H 1.48504 * 109.46519 * 120.00093 * 8 6 4 11 11 H 1.48495 * 109.47110 * 240.00457 * 8 6 4 12 12 C 1.53007 * 109.47377 * 119.99789 * 2 1 3 13 13 N 1.46505 * 109.46736 * 300.00092 * 12 2 1 14 14 C 1.34781 * 119.99511 * 179.97438 * 13 12 2 15 15 O 1.21584 * 119.99970 * 359.97438 * 14 13 12 16 16 N 1.34771 * 119.99489 * 180.02562 * 14 13 12 17 17 C 1.46505 * 119.99622 * 180.02562 * 16 14 13 18 18 C 1.52997 * 109.47212 * 179.97438 * 17 16 14 19 19 C 1.53003 * 112.99920 * 48.16910 * 18 17 16 20 20 O 1.42904 * 109.47115 * 180.02562 * 19 18 17 21 21 C 1.54040 * 113.81883 * 276.18762 * 18 17 16 22 22 O 1.44176 * 85.51928 * 223.19165 * 21 18 17 23 23 C 1.44183 * 93.34022 * 24.19177 * 22 21 18 24 24 H 1.08997 * 109.46951 * 299.99914 * 1 2 3 25 25 H 1.08993 * 109.47310 * 60.00417 * 1 2 3 26 26 H 1.09003 * 109.46665 * 180.02562 * 1 2 3 27 27 H 1.08994 * 109.47397 * 180.02562 * 3 2 1 28 28 H 1.09005 * 109.46440 * 300.00015 * 3 2 1 29 29 H 1.09000 * 109.47127 * 59.99710 * 3 2 1 30 30 H 0.96998 * 120.00482 * 180.02562 * 7 6 4 31 31 H 1.08994 * 109.47144 * 180.02562 * 12 2 1 32 32 H 1.08994 * 109.46765 * 60.00103 * 12 2 1 33 33 H 0.97003 * 120.00113 * 0.02562 * 13 12 2 34 34 H 0.96996 * 120.00772 * 359.97438 * 16 14 13 35 35 H 1.09002 * 109.47068 * 299.99729 * 17 16 14 36 36 H 1.09001 * 109.47372 * 59.99816 * 17 16 14 37 37 H 1.08993 * 109.47734 * 300.00238 * 19 18 17 38 38 H 1.09006 * 109.46647 * 60.00231 * 19 18 17 39 39 H 0.96702 * 113.99816 * 180.02562 * 20 19 18 40 40 H 1.08999 * 113.85864 * 337.34288 * 21 18 17 41 41 H 1.09000 * 113.86353 * 109.04720 * 21 18 17 42 42 H 1.08991 * 113.86578 * 221.65835 * 23 22 21 43 43 H 1.09000 * 113.86692 * 89.95141 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6992 -0.2394 -2.4827 7 7 0.9434 0.8300 -2.6034 8 14 2.3214 -1.1204 -4.0079 9 1 3.1457 -2.2876 -3.6037 10 1 1.1660 -1.5868 -4.8159 11 1 3.1466 -0.1874 -4.8165 12 6 2.0401 -0.7212 1.2493 13 7 1.5517 -0.0305 2.4454 14 6 1.8769 -0.4913 3.6696 15 8 2.5752 -1.4803 3.7811 16 7 1.4272 0.1438 4.7699 17 6 1.7812 -0.3566 6.1006 18 6 1.1480 0.5388 7.1673 19 6 -0.3344 0.8175 6.9109 20 8 -0.8474 1.6573 7.9471 21 6 1.9733 1.7983 7.4921 22 8 1.6714 1.5029 8.8706 23 6 1.4579 0.1007 8.6112 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5137 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 3.1299 1.4426 -0.0005 28 1 1.6766 1.9563 -0.8901 29 1 1.6766 1.9564 0.8900 30 1 0.7087 1.1612 -3.4844 31 1 3.1300 -0.7208 1.2495 32 1 1.6768 -1.7488 1.2493 33 1 0.9937 0.7579 2.3564 34 1 0.8699 0.9327 4.6810 35 1 1.4122 -1.3758 6.2154 36 1 2.8651 -0.3476 6.2157 37 1 -0.4492 1.3169 5.9489 38 1 -0.8843 -0.1236 6.8997 39 1 -1.7844 1.8752 7.8490 40 1 3.0307 1.7088 7.2433 41 1 1.5254 2.7242 7.1313 42 1 0.6013 -0.3197 9.1379 43 1 2.3579 -0.5070 8.7041 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001478793353.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:00 Heat of formation + Delta-G solvation = -92.762285 kcal Electronic energy + Delta-G solvation = -23372.645577 eV Core-core repulsion = 19840.499841 eV Total energy + Delta-G solvation = -3532.145736 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 286.173 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.13425 -39.49113 -36.73872 -36.52519 -34.81936 -33.29279 -31.41058 -30.46981 -26.83496 -26.47372 -25.76339 -25.74616 -25.27554 -24.07121 -20.67694 -19.37757 -18.80793 -18.49224 -17.48465 -16.51767 -16.40785 -15.88649 -15.79435 -15.21606 -15.12072 -14.94332 -14.69562 -14.05724 -13.72952 -13.60602 -13.16860 -12.88580 -12.66440 -12.59422 -12.20428 -11.68264 -11.45072 -11.36047 -11.22229 -10.90056 -10.81313 -10.66856 -10.40656 -10.27108 -10.22549 -9.86946 -9.78935 -9.65271 -9.32968 -9.07171 -8.80070 -8.43804 -8.23397 -6.03893 -4.13749 2.94937 3.26152 3.34886 3.39630 3.40702 3.57575 3.76966 3.82191 4.29550 4.37487 4.67205 4.75484 4.91936 5.03508 5.11634 5.21736 5.23142 5.30088 5.43160 5.55667 5.68134 5.79074 5.97170 6.18102 6.34465 6.47595 6.52245 6.77186 6.80176 6.87575 7.01004 7.06026 7.24185 7.28974 7.37598 7.53916 7.68441 7.99289 8.10663 8.35812 8.42689 8.86335 8.98627 9.52250 10.97582 Molecular weight = 286.17amu Principal moments of inertia in cm(-1) A = 0.037556 B = 0.003021 C = 0.002927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 745.374065 B = 9265.052665 C = 9564.086268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.056 3.944 3 C -0.130 4.130 4 C -0.505 4.505 5 H 0.058 0.942 6 C 0.066 3.934 7 N -0.886 5.886 8 Si 0.893 3.107 9 H -0.273 1.273 10 H -0.285 1.285 11 H -0.284 1.284 12 C 0.150 3.850 13 N -0.732 5.732 14 C 0.697 3.303 15 O -0.598 6.598 16 N -0.755 5.755 17 C 0.153 3.847 18 C -0.145 4.145 19 C 0.099 3.901 20 O -0.558 6.558 21 C 0.052 3.948 22 O -0.364 6.364 23 C 0.057 3.943 24 H 0.005 0.995 25 H 0.085 0.915 26 H 0.026 0.974 27 H 0.026 0.974 28 H 0.085 0.915 29 H 0.005 0.995 30 H 0.259 0.741 31 H 0.052 0.948 32 H 0.052 0.948 33 H 0.393 0.607 34 H 0.392 0.608 35 H 0.071 0.929 36 H 0.074 0.926 37 H 0.053 0.947 38 H 0.057 0.943 39 H 0.379 0.621 40 H 0.082 0.918 41 H 0.091 0.909 42 H 0.093 0.907 43 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.847 2.666 17.919 18.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.055 3.945 3 C -0.187 4.187 4 C -0.544 4.544 5 H 0.077 0.923 6 C -0.135 4.135 7 N -0.525 5.525 8 Si 0.721 3.279 9 H -0.197 1.197 10 H -0.211 1.211 11 H -0.211 1.211 12 C 0.027 3.973 13 N -0.387 5.387 14 C 0.397 3.603 15 O -0.477 6.477 16 N -0.413 5.413 17 C 0.028 3.972 18 C -0.146 4.146 19 C 0.021 3.979 20 O -0.363 6.363 21 C -0.025 4.025 22 O -0.282 6.282 23 C -0.020 4.020 24 H 0.024 0.976 25 H 0.104 0.896 26 H 0.045 0.955 27 H 0.046 0.954 28 H 0.103 0.897 29 H 0.024 0.976 30 H 0.069 0.931 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.228 0.772 34 H 0.227 0.773 35 H 0.089 0.911 36 H 0.093 0.907 37 H 0.071 0.929 38 H 0.075 0.925 39 H 0.226 0.774 40 H 0.100 0.900 41 H 0.109 0.891 42 H 0.111 0.889 43 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -2.654 1.953 18.287 18.581 hybrid contribution -0.803 0.190 -1.412 1.636 sum -3.457 2.143 16.875 17.358 Atomic orbital electron populations 1.21815 0.97799 0.99130 0.99955 1.18372 0.92780 0.92789 0.90580 1.21819 0.98597 0.98343 0.99973 1.21031 1.31378 1.12097 0.89856 0.92333 1.24880 0.94863 0.94923 0.98866 1.69809 1.36779 1.22799 1.23114 0.86517 0.78642 0.79776 0.82966 1.19725 1.21077 1.21064 1.21594 0.97910 0.95411 0.82361 1.45518 1.55539 1.33000 1.04611 1.16071 0.80543 0.83009 0.80679 1.90891 1.43071 1.27672 1.86081 1.45159 1.57896 1.33470 1.04821 1.21117 0.99758 0.96907 0.79434 1.24041 0.96087 0.97610 0.96864 1.21721 0.91705 0.94207 0.90238 1.86607 1.29903 1.70526 1.49282 1.23965 0.98620 0.97731 0.82163 1.89734 1.90470 1.21330 1.26714 1.23842 1.01047 0.85399 0.91742 0.97626 0.89648 0.95465 0.95439 0.89652 0.97591 0.93075 0.92923 0.92936 0.77237 0.77336 0.91075 0.90747 0.92904 0.92523 0.77411 0.89976 0.89082 0.88910 0.89926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.85 8.08 37.16 0.30 -2.55 16 2 C 0.06 1.27 0.50 -155.66 -0.08 1.19 16 3 C -0.13 -2.87 8.08 37.16 0.30 -2.57 16 4 C -0.50 -13.11 8.01 -34.44 -0.28 -13.39 16 5 H 0.06 1.54 7.74 -52.49 -0.41 1.14 16 6 C 0.07 1.71 5.15 -17.82 -0.09 1.62 16 7 N -0.89 -23.36 9.35 55.43 0.52 -22.84 16 8 Si 0.89 20.56 29.54 -169.99 -5.02 15.54 16 9 H -0.27 -6.29 7.11 56.52 0.40 -5.88 16 10 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 11 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 12 C 0.15 3.17 4.50 -4.04 -0.02 3.15 16 13 N -0.73 -12.72 4.96 -65.22 -0.32 -13.04 16 14 C 0.70 11.88 8.57 -86.92 -0.74 11.14 16 15 O -0.60 -12.64 16.34 5.29 0.09 -12.55 16 16 N -0.76 -9.06 5.31 -65.22 -0.35 -9.41 16 17 C 0.15 1.59 5.19 -4.04 -0.02 1.57 16 18 C -0.15 -1.26 1.15 -153.42 -0.18 -1.43 16 19 C 0.10 0.76 6.29 37.16 0.23 0.99 16 20 O -0.56 -4.61 12.10 -52.76 -0.64 -5.25 16 21 C 0.05 0.49 8.07 37.61 0.30 0.80 16 22 O -0.36 -4.23 11.59 -52.76 -0.61 -4.84 16 23 C 0.06 0.51 8.08 37.61 0.30 0.81 16 24 H 0.00 0.09 6.86 -51.93 -0.36 -0.26 16 25 H 0.08 2.09 6.07 -51.93 -0.32 1.78 16 26 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 27 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.08 2.10 6.07 -51.93 -0.32 1.78 16 29 H 0.01 0.10 6.86 -51.93 -0.36 -0.26 16 30 H 0.26 6.59 8.31 -40.82 -0.34 6.25 16 31 H 0.05 1.18 8.14 -51.93 -0.42 0.75 16 32 H 0.05 1.17 8.14 -51.93 -0.42 0.75 16 33 H 0.39 6.06 6.18 -40.82 -0.25 5.81 16 34 H 0.39 3.76 6.82 -40.82 -0.28 3.48 16 35 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.07 0.83 7.93 -51.93 -0.41 0.42 16 37 H 0.05 0.36 6.55 -51.93 -0.34 0.02 16 38 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 39 H 0.38 1.52 9.12 45.56 0.42 1.94 16 40 H 0.08 0.72 7.96 -51.93 -0.41 0.30 16 41 H 0.09 0.83 8.10 -51.93 -0.42 0.41 16 42 H 0.09 0.76 8.10 -51.93 -0.42 0.34 16 43 H 0.08 0.62 8.10 -51.93 -0.42 0.19 16 LS Contribution 341.79 15.07 5.15 5.15 Total: -1.00 -31.46 341.79 -7.11 -38.57 By element: Atomic # 1 Polarization: 13.30 SS G_CDS: -5.96 Total: 7.34 kcal Atomic # 6 Polarization: 1.29 SS G_CDS: 0.03 Total: 1.32 kcal Atomic # 7 Polarization: -45.13 SS G_CDS: -0.15 Total: -45.28 kcal Atomic # 8 Polarization: -21.48 SS G_CDS: -1.16 Total: -22.64 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.02 Total: 15.54 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -31.46 -7.11 -38.57 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001478793353.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.188 kcal (2) G-P(sol) polarization free energy of solvation -31.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.574 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds