Wall clock time and date at job start Tue Mar 31 2020 06:08:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.47022 * 2 1 4 4 C 1.50697 * 109.47472 * 240.00052 * 2 1 3 5 5 H 1.07998 * 119.99931 * 240.00254 * 4 2 1 6 6 C 1.37878 * 119.99890 * 59.99239 * 4 2 1 7 7 N 1.31510 * 120.00276 * 0.02562 * 6 4 2 8 8 Si 1.86808 * 119.99883 * 180.02562 * 6 4 2 9 9 H 1.48504 * 109.46815 * 0.02562 * 8 6 4 10 10 H 1.48504 * 109.46519 * 120.00093 * 8 6 4 11 11 H 1.48495 * 109.47110 * 240.00457 * 8 6 4 12 12 C 1.53007 * 109.47377 * 119.99789 * 2 1 3 13 13 N 1.46505 * 109.46736 * 300.00092 * 12 2 1 14 14 C 1.34781 * 119.99511 * 179.97438 * 13 12 2 15 15 O 1.21584 * 119.99970 * 359.97438 * 14 13 12 16 16 N 1.34771 * 119.99489 * 180.02562 * 14 13 12 17 17 C 1.46505 * 119.99622 * 180.02562 * 16 14 13 18 18 C 1.52997 * 109.47212 * 179.97438 * 17 16 14 19 19 C 1.53003 * 112.99920 * 48.16910 * 18 17 16 20 20 O 1.42904 * 109.47115 * 180.02562 * 19 18 17 21 21 C 1.54040 * 113.81883 * 276.18762 * 18 17 16 22 22 O 1.44176 * 85.51928 * 223.19165 * 21 18 17 23 23 C 1.44183 * 93.34022 * 24.19177 * 22 21 18 24 24 H 1.08997 * 109.46951 * 299.99914 * 1 2 3 25 25 H 1.08993 * 109.47310 * 60.00417 * 1 2 3 26 26 H 1.09003 * 109.46665 * 180.02562 * 1 2 3 27 27 H 1.08994 * 109.47397 * 180.02562 * 3 2 1 28 28 H 1.09005 * 109.46440 * 300.00015 * 3 2 1 29 29 H 1.09000 * 109.47127 * 59.99710 * 3 2 1 30 30 H 0.96998 * 120.00482 * 180.02562 * 7 6 4 31 31 H 1.08994 * 109.47144 * 180.02562 * 12 2 1 32 32 H 1.08994 * 109.46765 * 60.00103 * 12 2 1 33 33 H 0.97003 * 120.00113 * 0.02562 * 13 12 2 34 34 H 0.96996 * 120.00772 * 359.97438 * 16 14 13 35 35 H 1.09002 * 109.47068 * 299.99729 * 17 16 14 36 36 H 1.09001 * 109.47372 * 59.99816 * 17 16 14 37 37 H 1.08993 * 109.47734 * 300.00238 * 19 18 17 38 38 H 1.09006 * 109.46647 * 60.00231 * 19 18 17 39 39 H 0.96702 * 113.99816 * 180.02562 * 20 19 18 40 40 H 1.08999 * 113.85864 * 337.34288 * 21 18 17 41 41 H 1.09000 * 113.86353 * 109.04720 * 21 18 17 42 42 H 1.08991 * 113.86578 * 221.65835 * 23 22 21 43 43 H 1.09000 * 113.86692 * 89.95141 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6992 -0.2394 -2.4827 7 7 0.9434 0.8300 -2.6034 8 14 2.3214 -1.1204 -4.0079 9 1 3.1457 -2.2876 -3.6037 10 1 1.1660 -1.5868 -4.8159 11 1 3.1466 -0.1874 -4.8165 12 6 2.0401 -0.7212 1.2493 13 7 1.5517 -0.0305 2.4454 14 6 1.8769 -0.4913 3.6696 15 8 2.5752 -1.4803 3.7811 16 7 1.4272 0.1438 4.7699 17 6 1.7812 -0.3566 6.1006 18 6 1.1480 0.5388 7.1673 19 6 -0.3344 0.8175 6.9109 20 8 -0.8474 1.6573 7.9471 21 6 1.9733 1.7983 7.4921 22 8 1.6714 1.5029 8.8706 23 6 1.4579 0.1007 8.6112 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5137 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 3.1299 1.4426 -0.0005 28 1 1.6766 1.9563 -0.8901 29 1 1.6766 1.9564 0.8900 30 1 0.7087 1.1612 -3.4844 31 1 3.1300 -0.7208 1.2495 32 1 1.6768 -1.7488 1.2493 33 1 0.9937 0.7579 2.3564 34 1 0.8699 0.9327 4.6810 35 1 1.4122 -1.3758 6.2154 36 1 2.8651 -0.3476 6.2157 37 1 -0.4492 1.3169 5.9489 38 1 -0.8843 -0.1236 6.8997 39 1 -1.7844 1.8752 7.8490 40 1 3.0307 1.7088 7.2433 41 1 1.5254 2.7242 7.1313 42 1 0.6013 -0.3197 9.1379 43 1 2.3579 -0.5070 8.7041 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001478793353.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:59 Heat of formation + Delta-G solvation = -117.044542 kcal Electronic energy + Delta-G solvation = -23373.698534 eV Core-core repulsion = 19840.499841 eV Total energy + Delta-G solvation = -3533.198693 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 286.173 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.91700 -40.82787 -38.25095 -37.30615 -35.94322 -34.97429 -32.88900 -31.72861 -27.60780 -27.53914 -27.52941 -27.20173 -26.61166 -25.34705 -22.01264 -20.58728 -20.20581 -19.53081 -18.31213 -17.75403 -17.38128 -17.23881 -16.83225 -16.54217 -16.44531 -16.10859 -15.56978 -15.22007 -15.13619 -14.95503 -14.65216 -14.25951 -13.97874 -13.68547 -13.31123 -13.17458 -13.08989 -12.68057 -12.55983 -12.36320 -12.23459 -12.13454 -12.10803 -11.62102 -11.46215 -11.35581 -11.11104 -10.83486 -10.67891 -10.54686 -10.40210 -10.29595 -9.65716 -8.01401 -6.16683 1.42076 1.46525 1.55570 1.76822 2.21591 2.47096 2.70849 3.02827 3.22451 3.22495 3.46015 3.60371 4.09131 4.31089 4.39171 4.43710 4.49798 4.55096 4.56763 4.63263 4.65621 4.73734 4.78949 4.96241 5.02918 5.08339 5.09064 5.12503 5.22627 5.26383 5.40348 5.46718 5.64739 5.69125 5.69604 6.05227 6.17853 6.24280 6.45617 6.88111 6.92785 7.15457 7.51212 7.64235 8.97574 Molecular weight = 286.17amu Principal moments of inertia in cm(-1) A = 0.037556 B = 0.003021 C = 0.002927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 745.374065 B = 9265.052665 C = 9564.086268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.051 3.949 3 C -0.119 4.119 4 C -0.528 4.528 5 H 0.044 0.956 6 C 0.029 3.971 7 N -0.899 5.899 8 Si 0.944 3.056 9 H -0.275 1.275 10 H -0.282 1.282 11 H -0.282 1.282 12 C 0.168 3.832 13 N -0.726 5.726 14 C 0.697 3.303 15 O -0.640 6.640 16 N -0.733 5.733 17 C 0.155 3.845 18 C -0.133 4.133 19 C 0.099 3.901 20 O -0.576 6.576 21 C 0.049 3.951 22 O -0.392 6.392 23 C 0.055 3.945 24 H 0.038 0.962 25 H 0.061 0.939 26 H 0.017 0.983 27 H 0.017 0.983 28 H 0.061 0.939 29 H 0.038 0.962 30 H 0.260 0.740 31 H 0.034 0.966 32 H 0.035 0.965 33 H 0.405 0.595 34 H 0.408 0.592 35 H 0.069 0.931 36 H 0.069 0.931 37 H 0.064 0.936 38 H 0.064 0.936 39 H 0.397 0.603 40 H 0.087 0.913 41 H 0.094 0.906 42 H 0.099 0.901 43 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.607 3.247 18.848 19.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.051 3.949 3 C -0.177 4.177 4 C -0.567 4.567 5 H 0.062 0.938 6 C -0.171 4.171 7 N -0.538 5.538 8 Si 0.771 3.229 9 H -0.200 1.200 10 H -0.208 1.208 11 H -0.208 1.208 12 C 0.043 3.957 13 N -0.381 5.381 14 C 0.397 3.603 15 O -0.522 6.522 16 N -0.391 5.391 17 C 0.031 3.969 18 C -0.134 4.134 19 C 0.021 3.979 20 O -0.384 6.384 21 C -0.028 4.028 22 O -0.310 6.310 23 C -0.022 4.022 24 H 0.057 0.943 25 H 0.080 0.920 26 H 0.036 0.964 27 H 0.036 0.964 28 H 0.080 0.920 29 H 0.057 0.943 30 H 0.069 0.931 31 H 0.053 0.947 32 H 0.054 0.946 33 H 0.242 0.758 34 H 0.245 0.755 35 H 0.088 0.912 36 H 0.087 0.913 37 H 0.082 0.918 38 H 0.082 0.918 39 H 0.246 0.754 40 H 0.105 0.895 41 H 0.113 0.887 42 H 0.117 0.883 43 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -3.461 2.583 19.248 19.726 hybrid contribution -0.578 0.023 -1.628 1.728 sum -4.039 2.606 17.620 18.264 Atomic orbital electron populations 1.21650 0.97018 0.98640 1.00365 1.18364 0.93325 0.93028 0.90209 1.21658 0.97871 0.97835 1.00358 1.21320 1.31597 1.12141 0.91614 0.93755 1.25431 0.95168 0.95594 1.00906 1.69907 1.37066 1.23290 1.23500 0.85728 0.78124 0.78756 0.80318 1.20019 1.20755 1.20790 1.21109 0.96669 0.94669 0.83216 1.45196 1.55790 1.33197 1.03910 1.16174 0.80178 0.82662 0.81297 1.90870 1.44978 1.29695 1.86699 1.44954 1.56857 1.33211 1.04054 1.21183 0.99704 0.97281 0.78757 1.23924 0.96781 0.96718 0.95930 1.21748 0.90865 0.94749 0.90584 1.86563 1.31626 1.70615 1.49609 1.24073 0.99114 0.98190 0.81389 1.89710 1.90682 1.22790 1.27861 1.24005 1.01932 0.84544 0.91685 0.94321 0.92005 0.96354 0.96418 0.91993 0.94350 0.93069 0.94709 0.94617 0.75802 0.75479 0.91245 0.91273 0.91814 0.91756 0.75385 0.89518 0.88748 0.88281 0.88768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.11 8.08 71.98 0.58 -4.53 16 2 C 0.05 2.32 0.50 -52.92 -0.03 2.30 16 3 C -0.12 -5.16 8.08 71.98 0.58 -4.58 16 4 C -0.53 -27.63 8.01 25.60 0.21 -27.43 16 5 H 0.04 2.38 7.74 -2.91 -0.02 2.36 16 6 C 0.03 1.50 5.15 84.66 0.44 1.93 16 7 N -0.90 -47.23 9.35 21.45 0.20 -47.03 16 8 Si 0.94 42.23 29.54 68.60 2.03 44.25 16 9 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 10 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 11 H -0.28 -12.43 7.11 99.48 0.71 -11.73 16 12 C 0.17 7.02 4.50 86.38 0.39 7.41 16 13 N -0.73 -23.89 4.96 -478.53 -2.37 -26.27 16 14 C 0.70 22.62 8.57 179.05 1.53 24.16 16 15 O -0.64 -26.66 16.34 -3.98 -0.07 -26.73 16 16 N -0.73 -15.80 5.31 -478.53 -2.54 -18.34 16 17 C 0.16 2.92 5.19 86.38 0.45 3.37 16 18 C -0.13 -2.00 1.15 -51.48 -0.06 -2.06 16 19 C 0.10 1.24 6.29 71.98 0.45 1.69 16 20 O -0.58 -8.15 12.10 -132.22 -1.60 -9.75 16 21 C 0.05 0.83 8.07 72.28 0.58 1.42 16 22 O -0.39 -8.50 11.59 -132.22 -1.53 -10.03 16 23 C 0.06 0.88 8.08 72.28 0.58 1.46 16 24 H 0.04 1.36 6.86 -2.39 -0.02 1.34 16 25 H 0.06 2.98 6.07 -2.39 -0.01 2.96 16 26 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 27 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 28 H 0.06 3.00 6.07 -2.38 -0.01 2.98 16 29 H 0.04 1.36 6.86 -2.39 -0.02 1.35 16 30 H 0.26 13.13 8.31 -92.71 -0.77 12.36 16 31 H 0.03 1.57 8.14 -2.39 -0.02 1.55 16 32 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 33 H 0.41 11.27 6.18 -92.71 -0.57 10.70 16 34 H 0.41 6.46 6.82 -92.71 -0.63 5.83 16 35 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 36 H 0.07 1.43 7.93 -2.39 -0.02 1.41 16 37 H 0.06 0.65 6.55 -2.39 -0.02 0.64 16 38 H 0.06 0.72 8.14 -2.38 -0.02 0.71 16 39 H 0.40 2.23 9.12 -74.06 -0.68 1.55 16 40 H 0.09 1.37 7.96 -2.39 -0.02 1.35 16 41 H 0.09 1.52 8.10 -2.39 -0.02 1.50 16 42 H 0.10 1.43 8.10 -2.39 -0.02 1.41 16 43 H 0.09 1.24 8.10 -2.39 -0.02 1.22 16 Total: -1.00 -67.14 341.79 -1.02 -68.17 By element: Atomic # 1 Polarization: 21.43 SS G_CDS: -0.84 Total: 20.59 kcal Atomic # 6 Polarization: -0.57 SS G_CDS: 5.71 Total: 5.14 kcal Atomic # 7 Polarization: -86.92 SS G_CDS: -4.72 Total: -91.64 kcal Atomic # 8 Polarization: -43.31 SS G_CDS: -3.20 Total: -46.51 kcal Atomic # 14 Polarization: 42.23 SS G_CDS: 2.03 Total: 44.25 kcal Total: -67.14 -1.02 -68.17 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001478793353.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.879 kcal (2) G-P(sol) polarization free energy of solvation -67.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.165 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds