Wall clock time and date at job start Tue Mar 31 2020 06:07:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.47190 * 2 1 4 4 C 1.50693 * 109.47058 * 120.00237 * 2 1 3 5 5 H 1.08002 * 120.00331 * 114.37005 * 4 2 1 6 6 C 1.37885 * 120.00119 * 294.35814 * 4 2 1 7 7 N 1.31516 * 120.00168 * 156.60535 * 6 4 2 8 8 Si 1.86799 * 119.99974 * 336.88923 * 6 4 2 9 9 H 1.48495 * 109.47179 * 179.71887 * 8 6 4 10 10 H 1.48504 * 109.47000 * 299.71811 * 8 6 4 11 11 H 1.48500 * 109.47297 * 59.71926 * 8 6 4 12 12 N 1.46897 * 109.47069 * 240.00066 * 2 1 3 13 13 C 1.46910 * 110.99968 * 84.99944 * 12 2 1 14 14 C 1.52995 * 109.47174 * 180.02562 * 13 12 2 15 15 C 1.50700 * 109.47384 * 179.97438 * 14 13 12 16 16 C 1.38215 * 119.98783 * 269.72427 * 15 14 13 17 17 C 1.38360 * 120.01630 * 179.76589 * 16 15 14 18 18 Cl 1.73597 * 120.01077 * 180.27936 * 17 16 15 19 19 C 1.38332 * 119.98121 * 0.52928 * 17 16 15 20 20 C 1.38325 * 119.97465 * 359.72672 * 19 17 16 21 21 Cl 1.73601 * 120.00844 * 179.97438 * 20 19 17 22 22 C 1.38220 * 119.98394 * 89.99651 * 15 14 13 23 23 H 1.09003 * 109.46967 * 293.10580 * 1 2 3 24 24 H 1.09006 * 109.47378 * 53.10132 * 1 2 3 25 25 H 1.08996 * 109.47246 * 173.10534 * 1 2 3 26 26 H 0.97002 * 119.99516 * 355.21605 * 7 6 4 27 27 H 1.00899 * 110.99860 * 321.05226 * 12 2 1 28 28 H 1.09000 * 109.46893 * 300.00418 * 13 12 2 29 29 H 1.08997 * 109.46937 * 60.00212 * 13 12 2 30 30 H 1.09007 * 109.47226 * 300.00268 * 14 13 12 31 31 H 1.09008 * 109.47308 * 59.99536 * 14 13 12 32 32 H 1.08007 * 119.99069 * 0.02562 * 16 15 14 33 33 H 1.08004 * 120.01331 * 179.74757 * 19 17 16 34 34 H 1.08001 * 119.99707 * 359.97438 * 22 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.5762 -1.6385 1.1339 6 6 1.7978 -0.1755 2.4794 7 7 1.8025 -0.9538 3.5396 8 14 1.4655 1.6533 2.6648 9 1 1.2395 1.9726 4.0973 10 1 2.6336 2.4219 2.1647 11 1 0.2592 2.0194 1.8799 12 7 2.0196 -0.6925 -1.1994 13 6 2.0824 0.2227 -2.3469 14 6 2.5949 -0.5330 -3.5745 15 6 2.6588 0.4056 -4.7518 16 6 1.5655 0.5424 -5.5863 17 6 1.6217 1.4075 -6.6646 18 17 0.2460 1.5847 -7.7083 19 6 2.7764 2.1275 -6.9137 20 6 3.8720 1.9862 -6.0812 21 17 5.3217 2.8888 -6.3934 22 6 3.8126 1.1250 -4.9999 23 1 -0.3633 0.4033 0.9453 24 1 -0.3634 0.6170 -0.8219 25 1 -0.3633 -1.0202 -0.1234 26 1 1.9017 -1.9132 3.4364 27 1 1.4495 -1.4978 -1.4101 28 1 1.0870 0.6164 -2.5525 29 1 2.7588 1.0462 -2.1183 30 1 3.5903 -0.9272 -3.3692 31 1 1.9182 -1.3565 -3.8030 32 1 0.6656 -0.0231 -5.3942 33 1 2.8222 2.8000 -7.7576 34 1 4.6680 1.0147 -4.3498 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068614208.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:52 Heat of formation + Delta-G solvation = -3.722675 kcal Electronic energy + Delta-G solvation = -17442.749949 eV Core-core repulsion = 14426.498739 eV Total energy + Delta-G solvation = -3016.251210 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 287.054 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.87898 -37.03007 -36.94391 -36.28542 -33.71039 -32.11068 -30.91053 -29.79140 -26.99546 -24.75878 -23.08173 -22.98348 -21.14100 -19.95780 -17.51732 -17.31108 -16.32788 -15.98116 -15.00529 -14.68621 -14.40083 -14.22711 -13.83327 -13.55859 -13.18797 -12.62465 -12.46341 -12.29466 -12.14446 -11.97619 -11.77962 -11.58787 -11.31184 -11.23397 -11.12044 -10.84713 -10.76224 -10.43864 -10.07242 -9.76298 -9.07423 -9.02015 -9.00632 -8.16943 -7.48869 -6.42807 -3.99335 0.71128 0.78278 1.52709 1.99086 3.14474 3.38919 3.44601 3.61271 4.30478 4.52038 4.64845 4.70624 4.89479 4.91984 5.06313 5.22552 5.34725 5.37205 5.57516 5.72553 5.77781 5.81721 5.94346 6.20272 6.25495 6.30878 6.35330 6.41413 6.61496 6.84073 7.17758 7.77684 8.24936 8.33865 8.46940 9.03546 9.65015 10.94282 Molecular weight = 287.05amu Principal moments of inertia in cm(-1) A = 0.018903 B = 0.003496 C = 0.003206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1480.884652 B = 8006.773721 C = 8732.712033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.190 3.810 3 H 0.025 0.975 4 C -0.590 4.590 5 H 0.063 0.937 6 C 0.034 3.966 7 N -0.902 5.902 8 Si 1.035 2.965 9 H -0.285 1.285 10 H -0.284 1.284 11 H -0.280 1.280 12 N -0.674 5.674 13 C 0.062 3.938 14 C -0.081 4.081 15 C -0.044 4.044 16 C -0.105 4.105 17 C -0.021 4.021 18 Cl -0.062 7.062 19 C -0.113 4.113 20 C -0.021 4.021 21 Cl -0.061 7.061 22 C -0.101 4.101 23 H 0.056 0.944 24 H 0.019 0.981 25 H 0.044 0.956 26 H 0.269 0.731 27 H 0.329 0.671 28 H 0.021 0.979 29 H 0.068 0.932 30 H 0.088 0.912 31 H 0.075 0.925 32 H 0.139 0.861 33 H 0.141 0.859 34 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.887 5.638 -23.322 24.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.081 3.919 3 H 0.043 0.957 4 C -0.628 4.628 5 H 0.082 0.918 6 C -0.172 4.172 7 N -0.535 5.535 8 Si 0.863 3.137 9 H -0.211 1.211 10 H -0.210 1.210 11 H -0.206 1.206 12 N -0.304 5.304 13 C -0.068 4.068 14 C -0.119 4.119 15 C -0.045 4.045 16 C -0.123 4.123 17 C -0.048 4.048 18 Cl -0.033 7.033 19 C -0.133 4.133 20 C -0.048 4.048 21 Cl -0.032 7.032 22 C -0.120 4.120 23 H 0.075 0.925 24 H 0.038 0.962 25 H 0.063 0.937 26 H 0.079 0.921 27 H 0.145 0.855 28 H 0.039 0.961 29 H 0.086 0.914 30 H 0.106 0.894 31 H 0.094 0.906 32 H 0.157 0.843 33 H 0.159 0.841 34 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 1.302 7.007 -22.128 23.247 hybrid contribution -0.745 -0.905 -1.546 1.940 sum 0.557 6.102 -23.674 24.454 Atomic orbital electron populations 1.22825 1.01147 0.99703 0.99889 1.19489 0.88993 0.94469 0.88968 0.95707 1.21902 1.39758 1.10947 0.90186 0.91836 1.25632 0.93782 1.05588 0.92168 1.70847 1.44484 1.06306 1.31912 0.84174 0.77007 0.76429 0.76078 1.21057 1.20997 1.20649 1.60743 1.58015 1.08810 1.02820 1.21932 0.98632 0.96059 0.90180 1.20706 1.03952 0.96184 0.91046 1.19908 0.92005 0.96605 0.95975 1.21115 0.99608 0.98241 0.93369 1.20708 0.89387 1.00026 0.94712 1.98384 1.42213 1.96878 1.65869 1.20826 0.90832 1.00932 1.00689 1.20726 0.88839 0.97625 0.97578 1.98388 1.35887 1.73549 1.95357 1.21165 0.99282 0.95318 0.96253 0.92474 0.96239 0.93735 0.92113 0.85463 0.96088 0.91382 0.89354 0.90613 0.84278 0.84087 0.83922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.79 8.90 37.16 0.33 -3.46 16 2 C 0.19 4.42 2.17 -68.87 -0.15 4.27 16 3 H 0.03 0.60 6.37 -51.93 -0.33 0.27 16 4 C -0.59 -16.46 9.05 -34.44 -0.31 -16.77 16 5 H 0.06 1.93 8.06 -52.49 -0.42 1.51 16 6 C 0.03 0.97 5.19 -17.82 -0.09 0.88 16 7 N -0.90 -27.48 13.70 55.43 0.76 -26.72 16 8 Si 1.03 24.99 26.44 -169.99 -4.50 20.50 16 9 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 10 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 11 H -0.28 -6.29 6.15 56.52 0.35 -5.94 16 12 N -0.67 -13.24 6.23 -107.95 -0.67 -13.91 16 13 C 0.06 0.97 5.47 -3.82 -0.02 0.95 16 14 C -0.08 -0.98 5.60 -27.89 -0.16 -1.14 16 15 C -0.04 -0.48 5.13 -104.64 -0.54 -1.02 16 16 C -0.10 -1.09 9.48 -39.54 -0.38 -1.47 16 17 C -0.02 -0.22 6.32 -39.50 -0.25 -0.47 16 18 Cl -0.06 -0.59 28.96 -51.86 -1.50 -2.09 16 19 C -0.11 -1.11 9.61 -39.51 -0.38 -1.49 16 20 C -0.02 -0.21 6.32 -39.50 -0.25 -0.46 16 21 Cl -0.06 -0.59 28.96 -51.86 -1.50 -2.09 16 22 C -0.10 -1.09 9.49 -39.54 -0.38 -1.47 16 23 H 0.06 1.30 5.48 -51.93 -0.28 1.02 16 24 H 0.02 0.36 7.64 -51.93 -0.40 -0.04 16 25 H 0.04 0.92 8.00 -51.93 -0.42 0.50 16 26 H 0.27 8.16 8.73 -40.82 -0.36 7.80 16 27 H 0.33 6.05 8.38 -39.29 -0.33 5.72 16 28 H 0.02 0.33 7.58 -51.93 -0.39 -0.07 16 29 H 0.07 1.12 8.05 -51.93 -0.42 0.70 16 30 H 0.09 1.08 8.09 -51.93 -0.42 0.66 16 31 H 0.08 0.83 8.08 -51.92 -0.42 0.41 16 32 H 0.14 1.31 8.06 -52.48 -0.42 0.89 16 33 H 0.14 1.16 8.06 -52.48 -0.42 0.74 16 34 H 0.14 1.44 8.06 -52.49 -0.42 1.01 16 LS Contribution 316.01 15.07 4.76 4.76 Total: -1.00 -29.21 316.01 -9.52 -38.73 By element: Atomic # 1 Polarization: 6.78 SS G_CDS: -4.31 Total: 2.48 kcal Atomic # 6 Polarization: -19.08 SS G_CDS: -2.57 Total: -21.64 kcal Atomic # 7 Polarization: -40.72 SS G_CDS: 0.09 Total: -40.63 kcal Atomic # 14 Polarization: 24.99 SS G_CDS: -4.50 Total: 20.50 kcal Atomic # 17 Polarization: -1.18 SS G_CDS: -3.00 Total: -4.18 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -29.21 -9.52 -38.73 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068614208.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.005 kcal (2) G-P(sol) polarization free energy of solvation -29.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.728 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds