Wall clock time and date at job start Tue Mar 31 2020 06:07:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08995 * 109.47728 * 2 1 4 4 C 1.50703 * 109.46764 * 240.00204 * 2 1 3 5 5 H 1.08000 * 120.00340 * 273.99182 * 4 2 1 6 6 C 1.37880 * 120.00011 * 94.26598 * 4 2 1 7 7 N 1.31511 * 120.00335 * 181.73950 * 6 4 2 8 8 Si 1.86803 * 119.99659 * 1.74056 * 6 4 2 9 9 H 1.48498 * 109.47474 * 85.07701 * 8 6 4 10 10 H 1.48503 * 109.46970 * 205.07591 * 8 6 4 11 11 H 1.48502 * 109.47299 * 325.07284 * 8 6 4 12 12 N 1.46902 * 109.47203 * 120.00778 * 2 1 3 13 13 C 1.46897 * 110.99696 * 274.99329 * 12 2 1 14 14 C 1.53000 * 109.47250 * 179.97438 * 13 12 2 15 15 C 1.50699 * 109.47391 * 180.02562 * 14 13 12 16 16 C 1.38225 * 119.98890 * 269.72952 * 15 14 13 17 17 C 1.38353 * 120.01477 * 179.76732 * 16 15 14 18 18 Cl 1.73599 * 120.01067 * 180.27509 * 17 16 15 19 19 C 1.38335 * 119.98339 * 0.52859 * 17 16 15 20 20 C 1.38335 * 119.97508 * 359.72436 * 19 17 16 21 21 Cl 1.73600 * 120.00559 * 179.97438 * 20 19 17 22 22 C 1.38219 * 119.98568 * 90.00485 * 15 14 13 23 23 H 1.09005 * 109.46437 * 304.42501 * 1 2 3 24 24 H 1.08997 * 109.47095 * 64.42560 * 1 2 3 25 25 H 1.08993 * 109.47202 * 184.42628 * 1 2 3 26 26 H 0.96998 * 119.99896 * 180.02562 * 7 6 4 27 27 H 1.00902 * 111.00073 * 38.94575 * 12 2 1 28 28 H 1.08994 * 109.47668 * 300.00414 * 13 12 2 29 29 H 1.09008 * 109.46961 * 60.00242 * 13 12 2 30 30 H 1.08994 * 109.47431 * 300.00936 * 14 13 12 31 31 H 1.09008 * 109.46633 * 60.00418 * 14 13 12 32 32 H 1.08000 * 119.99270 * 359.97438 * 16 15 14 33 33 H 1.08008 * 120.01211 * 179.74798 * 19 17 16 34 34 H 1.07998 * 119.99447 * 359.97438 * 22 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.1509 -1.7838 -1.2238 6 6 2.3458 0.0107 -2.3632 7 7 2.7515 -0.6122 -3.4480 8 14 2.1943 1.8726 -2.3567 9 1 3.4386 2.4686 -1.8074 10 1 1.9843 2.3569 -3.7447 11 1 1.0396 2.2723 -1.5128 12 7 2.0197 -0.6927 1.1994 13 6 2.0826 0.2223 2.3468 14 6 2.5952 -0.5335 3.5744 15 6 2.6592 0.4050 4.7517 16 6 3.8150 1.1202 5.0031 17 6 3.8727 1.9856 6.0811 18 17 5.3219 2.8891 6.3926 19 6 2.7770 2.1268 6.9137 20 6 1.6223 1.4069 6.6646 21 17 0.2471 1.5830 7.7093 22 6 1.5640 0.5460 5.5830 23 1 -0.3632 0.5810 0.8478 24 1 -0.3633 0.4436 -0.9270 25 1 -0.3633 -1.0245 0.0793 26 1 2.9723 -0.1049 -4.2447 27 1 1.4495 -1.4981 1.4099 28 1 2.7590 1.0459 2.1182 29 1 1.0872 0.6161 2.5525 30 1 1.9186 -1.3569 3.8028 31 1 3.5906 -0.9276 3.3689 32 1 4.6721 1.0059 4.3561 33 1 2.8229 2.7992 7.7577 34 1 0.6625 -0.0160 5.3884 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068614213.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:54 Heat of formation + Delta-G solvation = -2.838484 kcal Electronic energy + Delta-G solvation = -17459.140490 eV Core-core repulsion = 14442.927621 eV Total energy + Delta-G solvation = -3016.212869 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 287.054 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.86245 -37.01818 -36.93245 -36.27576 -33.63659 -32.04724 -30.89608 -29.88936 -26.99013 -25.21869 -23.06566 -23.01174 -21.13004 -20.04721 -17.38830 -16.94021 -16.30903 -15.96754 -14.89932 -14.71063 -14.61741 -14.20619 -13.96036 -13.32153 -13.17793 -12.61290 -12.43034 -12.31756 -12.25081 -11.98326 -11.86712 -11.65138 -11.24548 -11.18945 -11.10559 -11.03816 -10.74885 -10.65881 -10.11956 -9.76620 -9.18914 -8.99891 -8.98795 -8.55457 -7.43141 -6.05916 -4.03490 0.72657 0.79774 1.53962 2.00389 3.16000 3.27812 3.35870 3.36300 4.31969 4.41335 4.66100 4.72248 4.90603 4.93729 5.02013 5.28429 5.36818 5.41293 5.63719 5.74145 5.80118 5.83939 5.95992 6.16089 6.25327 6.30733 6.37474 6.39829 6.58270 6.78171 7.10716 7.68218 7.92299 8.32197 8.65208 9.01769 9.56648 11.07754 Molecular weight = 287.05amu Principal moments of inertia in cm(-1) A = 0.018123 B = 0.003661 C = 0.003301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1544.598110 B = 7645.567099 C = 8480.101018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.181 3.819 3 H 0.035 0.965 4 C -0.493 4.493 5 H 0.076 0.924 6 C 0.070 3.930 7 N -0.901 5.901 8 Si 0.874 3.126 9 H -0.276 1.276 10 H -0.289 1.289 11 H -0.268 1.268 12 N -0.674 5.674 13 C 0.061 3.939 14 C -0.081 4.081 15 C -0.044 4.044 16 C -0.102 4.102 17 C -0.021 4.021 18 Cl -0.061 7.061 19 C -0.114 4.114 20 C -0.022 4.022 21 Cl -0.063 7.063 22 C -0.105 4.105 23 H 0.019 0.981 24 H 0.052 0.948 25 H 0.046 0.954 26 H 0.263 0.737 27 H 0.328 0.672 28 H 0.066 0.934 29 H 0.020 0.980 30 H 0.076 0.924 31 H 0.089 0.911 32 H 0.143 0.857 33 H 0.141 0.859 34 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.800 5.197 22.871 23.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.072 3.928 3 H 0.053 0.947 4 C -0.531 4.531 5 H 0.094 0.906 6 C -0.132 4.132 7 N -0.539 5.539 8 Si 0.702 3.298 9 H -0.202 1.202 10 H -0.215 1.215 11 H -0.193 1.193 12 N -0.304 5.304 13 C -0.069 4.069 14 C -0.119 4.119 15 C -0.045 4.045 16 C -0.120 4.120 17 C -0.048 4.048 18 Cl -0.032 7.032 19 C -0.133 4.133 20 C -0.049 4.049 21 Cl -0.034 7.034 22 C -0.123 4.123 23 H 0.038 0.962 24 H 0.071 0.929 25 H 0.065 0.935 26 H 0.073 0.927 27 H 0.145 0.855 28 H 0.085 0.915 29 H 0.038 0.962 30 H 0.095 0.905 31 H 0.108 0.892 32 H 0.161 0.839 33 H 0.159 0.841 34 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -0.061 5.411 22.619 23.258 hybrid contribution -1.022 1.333 0.257 1.699 sum -1.083 6.744 22.877 23.874 Atomic orbital electron populations 1.22665 1.00978 0.99979 0.99426 1.19633 0.89362 0.94638 0.89139 0.94655 1.20865 1.42755 0.95885 0.93613 0.90553 1.24967 0.94673 0.97974 0.95542 1.69883 1.45753 1.35720 1.02568 0.86932 0.78999 0.86787 0.77104 1.20164 1.21482 1.19298 1.60909 1.58043 1.08798 1.02659 1.21938 0.98546 0.96105 0.90268 1.20712 1.04069 0.96161 0.90957 1.19926 0.91936 0.96614 0.96007 1.21176 0.99313 0.95274 0.96274 1.20728 0.88829 0.97593 0.97622 1.98388 1.35947 1.73503 1.95367 1.20826 0.90873 1.00939 1.00680 1.20707 0.89368 1.00095 0.94680 1.98383 1.42284 1.96892 1.65833 1.21112 0.99614 0.98276 0.93340 0.96202 0.92903 0.93480 0.92665 0.85487 0.91504 0.96153 0.90543 0.89237 0.83895 0.84112 0.84263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.51 9.12 37.16 0.34 -3.17 16 2 C 0.18 4.12 2.17 -68.86 -0.15 3.97 16 3 H 0.04 0.84 5.13 -51.93 -0.27 0.57 16 4 C -0.49 -13.62 9.20 -34.44 -0.32 -13.93 16 5 H 0.08 2.31 8.06 -52.49 -0.42 1.89 16 6 C 0.07 2.00 5.47 -17.82 -0.10 1.90 16 7 N -0.90 -27.36 13.96 55.43 0.77 -26.59 16 8 Si 0.87 21.38 26.70 -169.99 -4.54 16.85 16 9 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 10 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 11 H -0.27 -6.26 6.86 56.52 0.39 -5.87 16 12 N -0.67 -13.00 6.23 -107.95 -0.67 -13.68 16 13 C 0.06 0.96 5.47 -3.83 -0.02 0.94 16 14 C -0.08 -0.98 5.60 -27.88 -0.16 -1.13 16 15 C -0.04 -0.48 5.13 -104.63 -0.54 -1.02 16 16 C -0.10 -1.11 9.48 -39.54 -0.38 -1.48 16 17 C -0.02 -0.22 6.32 -39.50 -0.25 -0.47 16 18 Cl -0.06 -0.61 28.96 -51.86 -1.50 -2.11 16 19 C -0.11 -1.13 9.62 -39.51 -0.38 -1.51 16 20 C -0.02 -0.22 6.32 -39.50 -0.25 -0.47 16 21 Cl -0.06 -0.59 28.96 -51.86 -1.50 -2.10 16 22 C -0.10 -1.09 9.48 -39.55 -0.38 -1.47 16 23 H 0.02 0.35 7.57 -51.93 -0.39 -0.04 16 24 H 0.05 1.14 7.87 -51.93 -0.41 0.73 16 25 H 0.05 0.91 8.05 -51.93 -0.42 0.49 16 26 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 27 H 0.33 5.82 8.42 -39.29 -0.33 5.48 16 28 H 0.07 1.11 8.05 -51.93 -0.42 0.69 16 29 H 0.02 0.31 7.52 -51.92 -0.39 -0.08 16 30 H 0.08 0.83 8.08 -51.93 -0.42 0.41 16 31 H 0.09 1.09 8.08 -51.92 -0.42 0.67 16 32 H 0.14 1.47 8.06 -52.49 -0.42 1.05 16 33 H 0.14 1.18 8.06 -52.48 -0.42 0.75 16 34 H 0.14 1.30 8.06 -52.49 -0.42 0.87 16 LS Contribution 318.58 15.07 4.80 4.80 Total: -1.00 -29.27 318.58 -9.51 -38.78 By element: Atomic # 1 Polarization: 6.19 SS G_CDS: -4.31 Total: 1.88 kcal Atomic # 6 Polarization: -15.28 SS G_CDS: -2.57 Total: -17.84 kcal Atomic # 7 Polarization: -40.37 SS G_CDS: 0.10 Total: -40.27 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -4.54 Total: 16.85 kcal Atomic # 17 Polarization: -1.20 SS G_CDS: -3.00 Total: -4.20 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -29.27 -9.51 -38.78 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068614213.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.946 kcal (2) G-P(sol) polarization free energy of solvation -29.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.784 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds