Wall clock time and date at job start Tue Mar 31 2020 06:07:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.50708 * 109.47141 * 119.99670 * 2 1 3 5 5 H 1.08000 * 119.99723 * 120.00060 * 4 2 1 6 6 C 1.37873 * 119.99930 * 300.00010 * 4 2 1 7 7 N 1.31509 * 120.00195 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99968 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.46680 * 60.00159 * 8 6 4 10 10 H 1.48492 * 109.47298 * 180.02562 * 8 6 4 11 11 H 1.48506 * 109.46944 * 300.00675 * 8 6 4 12 12 N 1.46894 * 109.47515 * 239.99762 * 2 1 3 13 13 C 1.46904 * 111.00430 * 183.95351 * 12 2 1 14 14 C 1.46902 * 110.99995 * 59.99995 * 12 2 1 15 15 C 1.50699 * 109.47426 * 190.00400 * 14 12 2 16 16 C 1.38218 * 119.99599 * 259.72734 * 15 14 12 17 17 C 1.38340 * 119.99904 * 179.72271 * 16 15 14 18 18 Cl 1.73599 * 120.00296 * 180.29702 * 17 16 15 19 19 C 1.38377 * 119.99799 * 0.56930 * 17 16 15 20 20 C 1.38183 * 119.99910 * 359.70376 * 19 17 16 21 21 C 1.38325 * 120.00091 * 79.99712 * 15 14 12 22 22 Cl 1.73602 * 120.00232 * 0.02562 * 21 15 14 23 23 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 25 25 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 26 26 H 0.97006 * 120.00358 * 179.97438 * 7 6 4 27 27 H 1.09003 * 109.46649 * 60.00159 * 13 12 2 28 28 H 1.08997 * 109.47179 * 180.02562 * 13 12 2 29 29 H 1.09001 * 109.46814 * 300.00363 * 13 12 2 30 30 H 1.08999 * 109.47127 * 310.00477 * 14 12 2 31 31 H 1.09007 * 109.47146 * 70.00046 * 14 12 2 32 32 H 1.07996 * 120.00618 * 359.97438 * 16 15 14 33 33 H 1.07991 * 120.00152 * 179.68144 * 19 17 16 34 34 H 1.07999 * 120.00221 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2306 5 1 2.6533 -1.5885 1.1315 6 6 1.6993 -0.2393 2.4828 7 7 0.9428 0.8297 2.6034 8 14 2.3213 -1.1202 4.0081 9 1 3.8063 -1.1207 4.0082 10 1 1.8260 -0.4204 5.2205 11 1 1.8259 -2.5201 4.0078 12 7 2.0197 -0.6925 -1.1993 13 6 3.4852 -0.7945 -1.1869 14 6 1.5487 -0.0264 -2.4210 15 6 1.8580 -0.8912 -3.6158 16 6 2.9571 -0.6110 -4.4057 17 6 3.2443 -1.4082 -5.4992 18 17 4.6291 -1.0609 -6.4869 19 6 2.4246 -2.4791 -5.8090 20 6 1.3226 -2.7559 -5.0226 21 6 1.0389 -1.9620 -3.9252 22 17 -0.3459 -2.3094 -2.9375 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 0.5139 0.8900 26 1 0.7081 1.1610 3.4844 27 1 3.8030 -1.3532 -0.3065 28 1 3.8210 -1.3109 -2.0861 29 1 3.9187 0.2052 -1.1590 30 1 0.4723 0.1324 -2.3564 31 1 2.0520 0.9346 -2.5280 32 1 3.5939 0.2279 -4.1670 33 1 2.6459 -3.0984 -6.6656 34 1 0.6826 -3.5915 -5.2646 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000087759913.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:56 Heat of formation + Delta-G solvation = 16.248703 kcal Electronic energy + Delta-G solvation = -18410.920277 eV Core-core repulsion = 15395.535091 eV Total energy + Delta-G solvation = -3015.385186 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 287.054 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.63499 -37.05914 -36.52716 -35.98924 -33.12211 -31.43437 -30.48927 -29.02194 -26.95695 -24.70201 -23.49355 -22.76557 -21.30761 -19.40017 -17.11766 -16.32618 -16.01311 -15.67135 -15.18170 -14.27331 -14.16392 -13.90998 -13.61493 -13.37593 -12.67987 -12.45183 -12.26600 -12.08087 -11.81113 -11.64600 -11.13602 -11.02884 -10.98881 -10.85445 -10.72268 -10.65208 -10.43953 -10.08955 -10.01828 -9.82084 -9.05447 -8.85383 -8.49027 -8.37931 -7.20296 -6.00505 -4.04790 0.97146 1.14561 1.97394 2.40932 3.32706 3.37076 3.39743 3.44842 4.41577 4.63201 4.70072 5.05665 5.07564 5.24937 5.32098 5.43661 5.67947 5.80149 5.95084 6.07062 6.10337 6.21090 6.31886 6.45263 6.56404 6.77307 6.86411 7.07539 7.15021 7.50899 7.70442 7.83249 8.19321 8.31393 8.57563 9.00917 9.60005 11.06200 Molecular weight = 287.05amu Principal moments of inertia in cm(-1) A = 0.022378 B = 0.004650 C = 0.004177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1250.915883 B = 6020.392885 C = 6702.110692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.215 3.785 3 H -0.002 1.002 4 C -0.502 4.502 5 H 0.063 0.937 6 C 0.060 3.940 7 N -0.894 5.894 8 Si 0.896 3.104 9 H -0.278 1.278 10 H -0.288 1.288 11 H -0.277 1.277 12 N -0.523 5.523 13 C 0.036 3.964 14 C 0.080 3.920 15 C -0.041 4.041 16 C -0.097 4.097 17 C -0.034 4.034 18 Cl -0.073 7.073 19 C -0.109 4.109 20 C -0.104 4.104 21 C -0.012 4.012 22 Cl -0.043 7.043 23 H 0.036 0.964 24 H 0.007 0.993 25 H 0.084 0.916 26 H 0.261 0.739 27 H 0.077 0.923 28 H 0.042 0.958 29 H 0.012 0.988 30 H 0.094 0.906 31 H 0.035 0.965 32 H 0.137 0.863 33 H 0.137 0.863 34 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.790 -4.230 -16.647 17.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.109 3.891 3 H 0.015 0.985 4 C -0.540 4.540 5 H 0.081 0.919 6 C -0.141 4.141 7 N -0.533 5.533 8 Si 0.724 3.276 9 H -0.204 1.204 10 H -0.214 1.214 11 H -0.202 1.202 12 N -0.248 5.248 13 C -0.113 4.113 14 C -0.048 4.048 15 C -0.043 4.043 16 C -0.116 4.116 17 C -0.061 4.061 18 Cl -0.045 7.045 19 C -0.128 4.128 20 C -0.123 4.123 21 C -0.040 4.040 22 Cl -0.014 7.014 23 H 0.055 0.945 24 H 0.026 0.974 25 H 0.102 0.898 26 H 0.070 0.930 27 H 0.095 0.905 28 H 0.061 0.939 29 H 0.030 0.970 30 H 0.112 0.888 31 H 0.053 0.947 32 H 0.155 0.845 33 H 0.155 0.845 34 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 1.505 -4.572 -16.458 17.148 hybrid contribution 0.722 0.368 0.833 1.162 sum 2.227 -4.204 -15.626 16.334 Atomic orbital electron populations 1.21831 0.97569 0.99784 0.99665 1.19250 0.92414 0.91869 0.85530 0.98451 1.21092 1.31048 1.12250 0.89650 0.91916 1.24907 0.95215 0.95067 0.98948 1.69879 1.36866 1.23039 1.23489 0.86597 0.79056 0.79797 0.82166 1.20382 1.21397 1.20237 1.62183 1.09249 1.52213 1.01158 1.22252 0.88728 0.99086 1.01225 1.21194 1.02356 0.92992 0.88229 1.19898 0.92900 0.95174 0.96300 1.20959 0.97182 1.00008 0.93466 1.20899 0.91590 0.98450 0.95173 1.98363 1.41918 1.94738 1.69441 1.20885 0.94378 0.96902 1.00650 1.20988 0.97643 0.99729 0.93938 1.20906 0.92407 0.96789 0.93880 1.98405 1.39714 1.94087 1.69148 0.94484 0.97407 0.89776 0.92959 0.90473 0.93948 0.96976 0.88778 0.94727 0.84495 0.84530 0.84310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.12 8.76 37.16 0.33 -2.79 16 2 C 0.21 5.29 2.06 -68.87 -0.14 5.15 16 3 H 0.00 -0.06 8.14 -51.93 -0.42 -0.48 16 4 C -0.50 -13.50 7.93 -34.44 -0.27 -13.78 16 5 H 0.06 1.69 6.39 -52.49 -0.34 1.35 16 6 C 0.06 1.63 5.30 -17.82 -0.09 1.54 16 7 N -0.89 -25.19 11.32 55.43 0.63 -24.56 16 8 Si 0.90 21.23 29.54 -169.99 -5.02 16.21 16 9 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 10 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 11 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 12 N -0.52 -10.91 4.61 -237.72 -1.10 -12.01 16 13 C 0.04 0.69 9.01 60.07 0.54 1.23 16 14 C 0.08 1.42 4.32 -4.98 -0.02 1.40 16 15 C -0.04 -0.62 4.57 -104.60 -0.48 -1.10 16 16 C -0.10 -1.30 8.42 -39.55 -0.33 -1.63 16 17 C -0.03 -0.42 6.32 -39.49 -0.25 -0.67 16 18 Cl -0.07 -0.80 28.96 -51.86 -1.50 -2.31 16 19 C -0.11 -1.19 9.83 -39.55 -0.39 -1.58 16 20 C -0.10 -1.23 9.83 -39.55 -0.39 -1.61 16 21 C -0.01 -0.18 6.31 -39.50 -0.25 -0.43 16 22 Cl -0.04 -0.67 27.51 -51.86 -1.43 -2.09 16 23 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 24 H 0.01 0.15 6.20 -51.93 -0.32 -0.17 16 25 H 0.08 2.22 6.07 -51.93 -0.32 1.90 16 26 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 27 H 0.08 1.61 6.23 -51.93 -0.32 1.29 16 28 H 0.04 0.73 6.43 -51.93 -0.33 0.40 16 29 H 0.01 0.23 8.14 -51.93 -0.42 -0.19 16 30 H 0.09 1.72 5.04 -51.93 -0.26 1.45 16 31 H 0.03 0.60 7.98 -51.92 -0.41 0.19 16 32 H 0.14 1.74 8.03 -52.49 -0.42 1.31 16 33 H 0.14 1.16 8.06 -52.49 -0.42 0.73 16 34 H 0.14 1.32 8.06 -52.49 -0.42 0.89 16 LS Contribution 307.18 15.07 4.63 4.63 Total: -1.00 -27.68 307.18 -9.52 -37.20 By element: Atomic # 1 Polarization: 1.19 SS G_CDS: -3.98 Total: -2.79 kcal Atomic # 6 Polarization: -12.52 SS G_CDS: -1.75 Total: -14.27 kcal Atomic # 7 Polarization: -36.10 SS G_CDS: -0.47 Total: -36.57 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Atomic # 17 Polarization: -1.47 SS G_CDS: -2.93 Total: -4.40 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -27.68 -9.52 -37.20 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087759913.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.444 kcal (2) G-P(sol) polarization free energy of solvation -27.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.195 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds