Wall clock time and date at job start Tue Mar 31 2020 05:52:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.46496 * 119.99896 * 2 1 4 4 C 1.50705 * 109.47066 * 269.99622 * 3 2 1 5 5 H 1.08001 * 119.99987 * 0.02562 * 4 3 2 6 6 C 1.37872 * 120.00127 * 179.97438 * 4 3 2 7 7 N 1.31512 * 120.00059 * 0.02562 * 6 4 3 8 8 Si 1.86801 * 120.00144 * 180.02562 * 6 4 3 9 9 H 1.48505 * 109.47035 * 89.99867 * 8 6 4 10 10 H 1.48496 * 109.47390 * 210.00116 * 8 6 4 11 11 H 1.48496 * 109.47004 * 330.00404 * 8 6 4 12 12 C 1.34779 * 120.00050 * 179.97438 * 2 1 3 13 13 O 1.21273 * 120.00093 * 180.02562 * 12 2 1 14 14 C 1.50706 * 119.99767 * 359.97438 * 12 2 1 15 15 C 1.53000 * 109.46735 * 180.02562 * 14 12 2 16 16 C 1.50703 * 109.46912 * 180.02562 * 15 14 12 17 17 C 1.33401 * 125.19739 * 90.00360 * 16 15 14 18 18 C 1.38473 * 114.91253 * 180.02562 * 17 16 15 19 19 Cl 1.73601 * 122.54864 * 179.97438 * 18 17 16 20 20 C 1.33441 * 114.90061 * 359.97438 * 18 17 16 21 21 S 1.75880 * 109.59952 * 359.73935 * 20 18 17 22 22 H 1.09003 * 109.46862 * 270.00235 * 1 2 3 23 23 H 1.08996 * 109.47101 * 30.00360 * 1 2 3 24 24 H 1.09003 * 109.46885 * 149.99968 * 1 2 3 25 25 H 1.08998 * 109.47205 * 29.99486 * 3 2 1 26 26 H 1.08997 * 109.47416 * 150.00347 * 3 2 1 27 27 H 0.97001 * 120.00292 * 180.02562 * 7 6 4 28 28 H 1.09001 * 109.46797 * 60.00350 * 14 12 2 29 29 H 1.08992 * 109.47518 * 300.00347 * 14 12 2 30 30 H 1.09002 * 109.47398 * 300.00410 * 15 14 12 31 31 H 1.09001 * 109.47194 * 60.00591 * 15 14 12 32 32 H 1.08003 * 122.54432 * 0.02562 * 17 16 15 33 33 H 1.08007 * 125.20002 * 179.97438 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7037 -1.4209 5 1 2.0975 1.0961 -2.2417 6 6 3.1260 2.8779 -1.6728 7 7 3.5533 3.6180 -0.6733 8 14 3.4368 3.4174 -3.4340 9 1 2.3064 4.2600 -3.9004 10 1 4.6968 4.2007 -3.4968 11 1 3.5541 2.2204 -4.3050 12 6 2.1390 -1.1672 0.0005 13 8 3.3517 -1.1672 0.0010 14 6 1.3854 -2.4723 0.0017 15 6 2.3797 -3.6352 0.0027 16 6 1.6261 -4.9404 0.0033 17 6 1.2421 -5.6070 -1.0866 18 6 0.5603 -6.7865 -0.8389 19 17 -0.0300 -7.8090 -2.1115 20 6 0.3915 -7.0773 0.4525 21 16 1.1255 -5.8213 1.4409 22 1 -0.3633 0.0000 1.0277 23 1 -0.3633 0.8899 -0.5139 24 1 -0.3633 -0.8900 -0.5139 25 1 1.6084 2.0284 0.5137 26 1 3.1499 1.1384 0.5138 27 1 4.0295 4.4443 -0.8505 28 1 0.7584 -2.5306 -0.8881 29 1 0.7590 -2.5295 0.8918 30 1 3.0064 -3.5783 -0.8873 31 1 3.0063 -3.5767 0.8927 32 1 1.4474 -5.2535 -2.0863 33 1 -0.1149 -7.9523 0.8326 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000135406621.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:12 Heat of formation + Delta-G solvation = -19.170715 kcal Electronic energy + Delta-G solvation = -17508.530445 eV Core-core repulsion = 14493.653063 eV Total energy + Delta-G solvation = -3014.877381 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 287.049 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.17895 -38.38022 -36.42658 -34.88937 -33.52585 -32.55577 -29.26731 -27.69117 -25.96946 -25.02752 -23.14500 -21.89822 -19.55408 -18.38844 -17.64903 -16.55178 -16.30685 -15.86433 -15.36147 -15.17516 -14.36106 -13.95465 -13.82399 -13.35215 -13.14580 -12.81814 -12.51464 -12.17812 -12.12377 -12.02461 -11.78311 -11.41127 -11.32606 -11.16837 -11.14662 -10.89936 -10.75264 -10.57262 -10.16763 -9.63924 -9.08411 -8.82697 -8.60648 -8.44647 -7.66213 -6.05350 -4.10284 0.61914 1.07540 1.50022 2.25968 2.36794 3.29402 3.35588 3.37959 3.43514 3.93247 4.43067 4.54966 4.82900 5.03432 5.13792 5.15865 5.27741 5.36625 5.56047 5.57004 5.74535 5.81799 5.89697 5.92640 6.10894 6.18026 6.20767 7.03750 7.42780 7.52271 7.90915 8.22206 8.39662 8.88603 9.06812 9.54961 11.02761 Molecular weight = 287.05amu Principal moments of inertia in cm(-1) A = 0.025861 B = 0.003223 C = 0.003031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1082.460445 B = 8684.776806 C = 9236.866795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.603 5.603 3 C 0.244 3.756 4 C -0.527 4.527 5 H 0.057 0.943 6 C 0.061 3.939 7 N -0.895 5.895 8 Si 0.898 3.102 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.274 1.274 12 C 0.503 3.497 13 O -0.543 6.543 14 C -0.134 4.134 15 C -0.036 4.036 16 C -0.149 4.149 17 C -0.142 4.142 18 C -0.038 4.038 19 Cl -0.057 7.057 20 C -0.222 4.222 21 S 0.143 5.857 22 H 0.044 0.956 23 H 0.074 0.926 24 H 0.057 0.943 25 H 0.032 0.968 26 H 0.044 0.956 27 H 0.263 0.737 28 H 0.091 0.909 29 H 0.087 0.913 30 H 0.096 0.904 31 H 0.086 0.914 32 H 0.151 0.849 33 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.465 -20.393 2.963 22.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.335 5.335 3 C 0.125 3.875 4 C -0.566 4.566 5 H 0.075 0.925 6 C -0.141 4.141 7 N -0.534 5.534 8 Si 0.726 3.274 9 H -0.206 1.206 10 H -0.211 1.211 11 H -0.199 1.199 12 C 0.290 3.710 13 O -0.421 6.421 14 C -0.175 4.175 15 C -0.076 4.076 16 C -0.267 4.267 17 C -0.172 4.172 18 C -0.078 4.078 19 Cl -0.028 7.028 20 C -0.359 4.359 21 S 0.406 5.594 22 H 0.063 0.937 23 H 0.092 0.908 24 H 0.076 0.924 25 H 0.050 0.950 26 H 0.062 0.938 27 H 0.073 0.927 28 H 0.109 0.891 29 H 0.105 0.895 30 H 0.114 0.886 31 H 0.105 0.895 32 H 0.169 0.831 33 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -8.638 -20.056 4.454 22.287 hybrid contribution -0.251 0.011 -2.619 2.631 sum -8.889 -20.045 1.836 22.004 Atomic orbital electron populations 1.21650 0.81423 1.02632 1.00434 1.48168 1.06202 1.07892 1.71196 1.19293 0.92565 0.78112 0.97509 1.21435 1.36537 1.06284 0.92304 0.92468 1.24941 0.95340 0.96398 0.97462 1.69931 1.38424 1.14303 1.30751 0.86493 0.77692 0.78600 0.84619 1.20636 1.21060 1.19879 1.20256 0.88087 0.85091 0.77592 1.90672 1.13873 1.87271 1.50297 1.21707 0.98967 0.92780 1.04065 1.19969 0.96002 0.86211 1.05425 1.24608 1.05164 1.01775 0.95151 1.19897 1.02103 0.94460 1.00701 1.19782 1.03740 0.95088 0.89163 1.98365 1.87045 1.66844 1.50575 1.25523 1.09473 1.05568 0.95331 1.84469 1.52473 1.14010 1.08488 0.93722 0.90765 0.92394 0.95027 0.93812 0.92699 0.89051 0.89468 0.88613 0.89541 0.83134 0.81078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.28 10.24 59.85 0.61 1.89 16 2 N -0.60 -12.56 2.86 -182.95 -0.52 -13.09 16 3 C 0.24 6.37 5.16 -5.19 -0.03 6.34 16 4 C -0.53 -14.92 9.39 -34.44 -0.32 -15.24 16 5 H 0.06 1.62 7.81 -52.49 -0.41 1.21 16 6 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 7 N -0.90 -26.60 13.29 55.43 0.74 -25.87 16 8 Si 0.90 21.82 29.54 -169.99 -5.02 16.80 16 9 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 10 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 11 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 12 C 0.50 10.06 7.67 -10.98 -0.08 9.98 16 13 O -0.54 -13.21 15.56 5.56 0.09 -13.13 16 14 C -0.13 -1.85 4.24 -27.88 -0.12 -1.97 16 15 C -0.04 -0.47 5.00 -27.88 -0.14 -0.61 16 16 C -0.15 -1.64 5.76 -36.00 -0.21 -1.85 16 17 C -0.14 -1.53 9.94 -41.19 -0.41 -1.94 16 18 C -0.04 -0.39 6.27 -41.17 -0.26 -0.64 16 19 Cl -0.06 -0.55 29.11 -51.86 -1.51 -2.06 16 20 C -0.22 -2.01 11.08 29.05 0.32 -1.69 16 21 S 0.14 1.34 23.33 -107.50 -2.51 -1.17 16 22 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 23 H 0.07 1.19 8.07 -51.93 -0.42 0.77 16 24 H 0.06 0.72 6.44 -51.93 -0.33 0.39 16 25 H 0.03 0.83 8.07 -51.93 -0.42 0.41 16 26 H 0.04 1.28 7.42 -51.93 -0.39 0.90 16 27 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 28 H 0.09 1.13 7.40 -51.93 -0.38 0.75 16 29 H 0.09 1.02 8.11 -51.93 -0.42 0.60 16 30 H 0.10 1.32 8.10 -51.93 -0.42 0.90 16 31 H 0.09 1.16 8.10 -51.93 -0.42 0.73 16 32 H 0.15 1.53 8.06 -52.48 -0.42 1.11 16 33 H 0.17 1.18 8.06 -52.48 -0.42 0.76 16 LS Contribution 317.29 15.07 4.78 4.78 Total: -1.00 -32.28 317.29 -8.70 -40.98 By element: Atomic # 1 Polarization: 0.87 SS G_CDS: -4.02 Total: -3.15 kcal Atomic # 6 Polarization: -3.37 SS G_CDS: -0.73 Total: -4.10 kcal Atomic # 7 Polarization: -39.17 SS G_CDS: 0.21 Total: -38.95 kcal Atomic # 8 Polarization: -13.21 SS G_CDS: 0.09 Total: -13.13 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Atomic # 16 Polarization: 1.34 SS G_CDS: -2.51 Total: -1.17 kcal Atomic # 17 Polarization: -0.55 SS G_CDS: -1.51 Total: -2.06 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -32.28 -8.70 -40.98 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000135406621.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.810 kcal (2) G-P(sol) polarization free energy of solvation -32.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.981 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds