Wall clock time and date at job start Tue Mar 31 2020 06:07:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08994 * 109.47101 * 2 1 4 4 C 1.52997 * 109.47101 * 119.99999 * 2 1 3 5 5 F 1.39907 * 109.47060 * 59.99757 * 4 2 1 6 6 F 1.39904 * 109.46972 * 179.97438 * 4 2 1 7 7 F 1.39896 * 109.47170 * 299.99834 * 4 2 1 8 8 S 1.81396 * 109.46722 * 240.00074 * 2 1 3 9 9 O 1.42100 * 110.54242 * 171.62456 * 8 2 1 10 10 O 1.42109 * 110.54504 * 308.37397 * 8 2 1 11 11 N 1.65596 * 104.45309 * 59.99683 * 8 2 1 12 12 C 1.36945 * 119.99621 * 89.99952 * 11 8 2 13 13 H 1.07999 * 120.00148 * 307.82252 * 12 11 8 14 14 C 1.38812 * 119.99787 * 127.82734 * 12 11 8 15 15 N 1.31619 * 120.00122 * 347.62592 * 14 12 11 16 16 Si 1.86803 * 119.99939 * 167.63093 * 14 12 11 17 17 H 1.48497 * 109.47005 * 59.99686 * 16 14 12 18 18 H 1.48494 * 109.47155 * 179.97438 * 16 14 12 19 19 H 1.48503 * 109.46816 * 299.99881 * 16 14 12 20 20 C 1.46498 * 120.00292 * 270.00204 * 11 8 2 21 21 C 1.53002 * 117.49656 * 181.99753 * 20 11 8 22 22 C 1.52993 * 117.49939 * 113.33622 * 20 11 8 23 23 H 1.09005 * 109.47558 * 59.99783 * 1 2 3 24 24 H 1.09002 * 109.47367 * 180.02562 * 1 2 3 25 25 H 1.09009 * 109.47195 * 299.99914 * 1 2 3 26 26 H 0.96999 * 120.00181 * 175.33138 * 15 14 12 27 27 H 1.08997 * 115.54696 * 327.65826 * 20 11 8 28 28 H 1.08993 * 117.50339 * 359.97438 * 21 20 11 29 29 H 1.08999 * 117.49667 * 145.02300 * 21 20 11 30 30 H 1.08999 * 117.49897 * 214.98104 * 22 20 11 31 31 H 1.08997 * 117.50132 * 359.97438 * 22 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 1.2492 5 9 1.5736 -2.0403 1.2492 6 9 3.4390 -0.7217 1.2489 7 9 1.5737 -0.0617 2.3915 8 16 2.1345 -0.8551 -1.4811 9 8 3.5419 -0.7030 -1.6052 10 8 1.5219 -2.1313 -1.6052 11 7 1.5162 0.0191 -2.7444 12 6 2.2290 1.0653 -3.2667 13 1 2.6043 1.8413 -2.6161 14 6 2.4690 1.1283 -4.6325 15 7 2.2320 0.0794 -5.3914 16 14 3.1286 2.7017 -5.3932 17 1 4.4407 3.0346 -4.7826 18 1 3.2981 2.5110 -6.8561 19 1 2.1719 3.8101 -5.1456 20 6 0.2069 -0.3267 -3.3031 21 6 -0.2884 0.4888 -4.4991 22 6 -0.9276 0.6837 -3.1219 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3634 0.5139 0.8901 26 1 2.3349 0.1438 -6.3538 27 1 -0.0522 -1.3850 -3.2736 28 1 0.3596 1.2828 -4.8701 29 1 -0.8739 -0.0329 -5.2562 30 1 -1.9332 0.2902 -2.9735 31 1 -0.6999 1.6056 -2.5867 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331771908.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:24 Heat of formation + Delta-G solvation = -180.353682 kcal Electronic energy + Delta-G solvation = -22813.445718 eV Core-core repulsion = 18809.013014 eV Total energy + Delta-G solvation = -4004.432704 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 287.059 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -50.06219 -47.54179 -47.53302 -37.36365 -36.09208 -34.86800 -33.76303 -32.91319 -31.06089 -26.35398 -24.90684 -22.61235 -21.45695 -20.77016 -18.91592 -18.59488 -18.37295 -17.47500 -16.87999 -16.61110 -15.63575 -14.95409 -14.76739 -14.35034 -14.28325 -13.95868 -13.95757 -13.74797 -13.64685 -13.63061 -13.13605 -12.73547 -12.36178 -12.02177 -11.80181 -11.46070 -11.36409 -11.17489 -11.06788 -10.96596 -10.84367 -10.43241 -10.41981 -10.13216 -9.84358 -9.26276 -8.67105 -7.62931 -6.42376 -4.28442 0.95770 2.65482 3.12498 3.18187 3.19247 3.53641 3.91057 4.01657 4.16925 4.25195 4.68442 4.75155 4.77622 5.04402 5.18923 5.47118 5.67688 5.78333 5.91397 5.99421 6.08339 6.24392 6.36879 6.52055 6.89981 7.16593 7.32818 7.56341 8.23650 8.81035 9.22728 10.58431 Molecular weight = 287.06amu Principal moments of inertia in cm(-1) A = 0.024518 B = 0.007421 C = 0.006784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1141.741345 B = 3772.316574 C = 4126.603851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.670 4.670 3 H 0.166 0.834 4 C 0.470 3.530 5 F -0.172 7.172 6 F -0.173 7.173 7 F -0.177 7.177 8 S 2.544 3.456 9 O -0.939 6.939 10 O -0.971 6.971 11 N -0.805 5.805 12 C -0.287 4.287 13 H 0.086 0.914 14 C 0.054 3.946 15 N -0.826 5.826 16 Si 0.912 3.088 17 H -0.268 1.268 18 H -0.281 1.281 19 H -0.270 1.270 20 C 0.116 3.884 21 C -0.135 4.135 22 C -0.230 4.230 23 H 0.104 0.896 24 H 0.078 0.922 25 H 0.073 0.927 26 H 0.272 0.728 27 H 0.114 0.886 28 H 0.112 0.888 29 H 0.075 0.925 30 H 0.080 0.920 31 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.325 2.583 6.747 8.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.769 4.769 3 H 0.183 0.817 4 C 0.414 3.586 5 F -0.154 7.154 6 F -0.155 7.155 7 F -0.158 7.158 8 S 2.640 3.360 9 O -0.929 6.929 10 O -0.960 6.960 11 N -0.633 5.633 12 C -0.427 4.427 13 H 0.103 0.897 14 C -0.159 4.159 15 N -0.462 5.462 16 Si 0.737 3.263 17 H -0.192 1.192 18 H -0.206 1.206 19 H -0.195 1.195 20 C 0.007 3.993 21 C -0.174 4.174 22 C -0.271 4.271 23 H 0.122 0.878 24 H 0.097 0.903 25 H 0.092 0.908 26 H 0.082 0.918 27 H 0.131 0.869 28 H 0.130 0.870 29 H 0.094 0.906 30 H 0.098 0.902 31 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -4.684 1.583 6.810 8.415 hybrid contribution 0.187 1.179 0.182 1.208 sum -4.497 2.762 6.992 8.760 Atomic orbital electron populations 1.21666 0.87289 1.04903 1.05783 1.32287 1.10742 1.17045 1.16837 0.81654 1.19788 0.75680 0.77689 0.85402 1.93257 1.88411 1.36978 1.96717 1.93279 1.29087 1.96397 1.96711 1.93163 1.88451 1.80682 1.53529 1.09361 0.75232 0.75309 0.76076 1.93491 1.29750 1.86022 1.83607 1.93437 1.78325 1.40257 1.84010 1.51957 1.22665 1.43357 1.45306 1.19004 1.32684 0.98690 0.92339 0.89694 1.25681 0.94693 0.97617 0.97880 1.70119 1.42405 1.27855 1.05810 0.86265 0.80103 0.81675 0.78299 1.19233 1.20560 1.19496 1.21079 0.81972 0.94471 1.01753 1.23026 1.01186 1.03522 0.89683 1.23518 0.97111 1.02955 1.03488 0.87786 0.90304 0.90844 0.91794 0.86881 0.87015 0.90639 0.90168 0.89116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 26. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.03 8.67 37.16 0.32 -1.71 16 2 C -0.67 -11.54 3.00 -26.73 -0.08 -11.62 16 3 H 0.17 2.50 8.14 -51.93 -0.42 2.07 16 4 C 0.47 8.13 2.67 37.16 0.10 8.23 16 5 F -0.17 -3.09 16.07 2.25 0.04 -3.05 16 6 F -0.17 -3.20 16.59 2.25 0.04 -3.17 16 7 F -0.18 -2.73 16.80 2.25 0.04 -2.70 16 8 S 2.54 57.31 4.48 -107.50 -0.48 56.83 16 9 O -0.94 -24.42 16.73 -57.54 -0.96 -25.38 16 10 O -0.97 -23.39 16.21 -57.54 -0.93 -24.33 16 11 N -0.80 -18.34 2.72 -53.43 -0.15 -18.49 16 12 C -0.29 -6.87 8.14 -15.06 -0.12 -6.99 16 13 H 0.09 1.92 7.86 -52.49 -0.41 1.51 16 14 C 0.05 1.29 3.20 -17.43 -0.06 1.23 16 15 N -0.83 -20.91 11.38 55.49 0.63 -20.28 16 16 Si 0.91 18.60 29.52 -169.99 -5.02 13.58 16 17 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 18 H -0.28 -5.71 7.11 56.52 0.40 -5.31 16 19 H -0.27 -5.27 7.11 56.52 0.40 -4.86 16 20 C 0.12 2.40 5.11 -67.93 -0.35 2.06 16 21 C -0.13 -2.64 8.28 -26.69 -0.22 -2.87 16 22 C -0.23 -3.87 8.48 -26.70 -0.23 -4.10 16 23 H 0.10 1.48 4.61 -51.93 -0.24 1.24 16 24 H 0.08 1.15 7.77 -51.93 -0.40 0.75 16 25 H 0.07 0.90 7.80 -51.92 -0.41 0.49 16 26 H 0.27 6.47 8.32 -40.82 -0.34 6.13 16 27 H 0.11 2.38 7.40 -51.93 -0.38 1.99 16 28 H 0.11 2.39 5.13 -51.93 -0.27 2.12 16 29 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 30 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 31 H 0.09 1.48 7.65 -51.93 -0.40 1.08 16 LS Contribution 280.32 15.07 4.22 4.22 Total: -1.00 -28.67 280.32 -6.11 -34.78 By element: Atomic # 1 Polarization: 6.65 SS G_CDS: -2.91 Total: 3.74 kcal Atomic # 6 Polarization: -15.13 SS G_CDS: -0.63 Total: -15.77 kcal Atomic # 7 Polarization: -39.25 SS G_CDS: 0.49 Total: -38.76 kcal Atomic # 8 Polarization: -47.81 SS G_CDS: -1.90 Total: -49.71 kcal Atomic # 9 Polarization: -9.02 SS G_CDS: 0.11 Total: -8.91 kcal Atomic # 14 Polarization: 18.60 SS G_CDS: -5.02 Total: 13.58 kcal Atomic # 16 Polarization: 57.31 SS G_CDS: -0.48 Total: 56.83 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -28.67 -6.11 -34.78 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331771908.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -145.570 kcal (2) G-P(sol) polarization free energy of solvation -28.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -174.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.784 kcal (6) G-S(sol) free energy of system = (1) + (5) -180.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds