Wall clock time and date at job start Tue Mar 31 2020 05:33:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13598 * 1 3 3 C 1.43201 * 179.97438 * 2 1 4 4 N 1.29090 * 124.87092 * 240.44135 * 3 2 1 5 5 C 1.33485 * 118.17663 * 179.97438 * 4 3 2 6 6 C 1.41542 * 128.70509 * 180.26823 * 5 4 3 7 7 C 1.35821 * 120.62660 * 180.21018 * 6 5 4 8 8 C 1.39557 * 120.76870 * 359.49850 * 7 6 5 9 9 N 1.39870 * 120.05363 * 180.27846 * 8 7 6 10 10 C 1.34778 * 119.99623 * 33.35330 * 9 8 7 11 11 O 1.21288 * 120.00194 * 5.28074 * 10 9 8 12 12 C 1.50700 * 119.99981 * 185.28043 * 10 9 8 13 13 C 1.50696 * 109.47273 * 180.02562 * 12 10 9 14 14 H 1.07996 * 120.00247 * 359.97438 * 13 12 10 15 15 C 1.37879 * 120.00053 * 179.97438 * 13 12 10 16 16 N 1.31512 * 120.00002 * 0.02562 * 15 13 12 17 17 Si 1.86799 * 120.00245 * 180.02562 * 15 13 12 18 18 H 1.48500 * 109.47327 * 89.99896 * 17 15 13 19 19 H 1.48500 * 109.46934 * 210.00512 * 17 15 13 20 20 H 1.48507 * 109.46652 * 329.99951 * 17 15 13 21 21 C 1.38209 * 119.90079 * 0.24901 * 8 7 6 22 22 C 1.39361 * 119.98323 * 0.02562 * 21 8 7 23 23 S 1.75852 * 124.86778 * 60.41584 * 3 2 1 24 24 H 1.08012 * 119.68820 * 359.96189 * 6 5 4 25 25 H 1.07997 * 119.61748 * 179.76710 * 7 6 5 26 26 H 0.96994 * 120.00161 * 213.36239 * 9 8 7 27 27 H 1.09000 * 109.47127 * 300.00191 * 12 10 9 28 28 H 1.09000 * 109.47292 * 59.99519 * 12 10 9 29 29 H 0.97001 * 120.00674 * 179.97438 * 16 15 13 30 30 H 1.07999 * 120.01061 * 180.02562 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 7 3.3058 0.5234 0.9213 5 6 4.6316 0.4468 0.7862 6 6 5.6392 0.9329 1.6533 7 6 6.9526 0.7667 1.3498 8 6 7.3375 0.1047 0.1831 9 7 8.6943 -0.0632 -0.1119 10 6 9.5844 -0.2357 0.8854 11 8 9.1991 -0.3413 2.0306 12 6 11.0583 -0.2974 0.5777 13 6 11.8307 -0.4950 1.8565 14 1 11.3068 -0.5681 2.7980 15 6 13.2063 -0.5824 1.8245 16 7 13.8445 -0.4929 0.6780 17 14 14.1638 -0.8280 3.4096 18 1 14.3256 -2.2810 3.6701 19 1 15.5014 -0.1957 3.2828 20 1 13.4252 -0.2023 4.5358 21 6 6.3758 -0.3853 -0.6802 22 6 5.0242 -0.2174 -0.3850 23 16 3.5736 -0.7112 -1.2547 24 1 5.3610 1.4445 2.5630 25 1 7.7079 1.1475 2.0212 26 1 8.9948 -0.0554 -1.0341 27 1 11.2540 -1.1309 -0.0970 28 1 11.3700 0.6338 0.1046 29 1 14.8123 -0.5540 0.6555 30 1 6.6717 -0.8983 -1.5834 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001143198607.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:44 Heat of formation + Delta-G solvation = 57.025852 kcal Electronic energy + Delta-G solvation = -18214.536595 eV Core-core repulsion = 15101.855851 eV Total energy + Delta-G solvation = -3112.680744 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 287.047 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.86313 -39.49733 -37.46466 -36.52148 -34.03001 -33.12624 -31.33728 -30.03612 -28.68743 -26.05106 -23.86154 -23.74779 -21.98017 -20.44769 -18.99773 -18.35669 -17.76655 -16.58761 -16.05855 -15.73332 -15.52898 -15.16841 -14.60329 -14.35184 -14.20430 -13.75021 -13.67865 -13.42382 -13.26246 -12.90103 -12.76621 -12.27751 -12.14688 -11.41177 -11.20467 -10.92255 -10.79061 -10.46375 -10.22667 -10.11899 -10.02537 -9.47112 -9.10719 -8.58746 -8.55571 -7.97839 -6.21248 -4.22480 -0.29037 0.53023 0.97970 1.19421 1.63025 2.18976 2.77968 3.08925 3.19505 3.26314 3.28712 3.32835 3.41107 3.62459 4.16366 4.35911 4.44737 4.89225 5.03729 5.14958 5.17729 5.49387 5.69230 5.80279 5.91415 6.15018 6.30515 6.76227 6.81590 6.93047 7.06868 7.15714 7.57585 7.81425 8.08950 8.70223 8.88076 9.43716 10.90729 Molecular weight = 287.05amu Principal moments of inertia in cm(-1) A = 0.050981 B = 0.002907 C = 0.002796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 549.096229 B = 9629.327945 C =10010.759813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.367 5.367 2 C 0.292 3.708 3 C 0.133 3.867 4 N -0.396 5.396 5 C 0.042 3.958 6 C -0.024 4.024 7 C -0.112 4.112 8 C 0.222 3.778 9 N -0.686 5.686 10 C 0.515 3.485 11 O -0.514 6.514 12 C 0.007 3.993 13 C -0.515 4.515 14 H 0.077 0.923 15 C 0.058 3.942 16 N -0.898 5.898 17 Si 0.903 3.097 18 H -0.279 1.279 19 H -0.286 1.286 20 H -0.271 1.271 21 C -0.134 4.134 22 C -0.125 4.125 23 S 0.134 5.866 24 H 0.143 0.857 25 H 0.156 0.844 26 H 0.414 0.586 27 H 0.053 0.947 28 H 0.056 0.944 29 H 0.264 0.736 30 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.768 1.455 -6.704 17.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.047 5.047 2 C -0.027 4.027 3 C -0.149 4.149 4 N -0.111 5.111 5 C -0.080 4.080 6 C -0.046 4.046 7 C -0.135 4.135 8 C 0.120 3.880 9 N -0.332 5.332 10 C 0.307 3.693 11 O -0.387 6.387 12 C -0.032 4.032 13 C -0.554 4.554 14 H 0.095 0.905 15 C -0.144 4.144 16 N -0.537 5.537 17 Si 0.731 3.269 18 H -0.205 1.205 19 H -0.212 1.212 20 H -0.196 1.196 21 C -0.162 4.162 22 C -0.245 4.245 23 S 0.388 5.612 24 H 0.161 0.839 25 H 0.173 0.827 26 H 0.250 0.750 27 H 0.071 0.929 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -18.001 1.095 -6.409 19.139 hybrid contribution 1.777 0.131 0.775 1.943 sum -16.224 1.225 -5.633 17.218 Atomic orbital electron populations 1.81313 1.10379 1.06891 1.06092 1.23701 0.89885 0.94522 0.94638 1.21071 0.90691 1.06221 0.96880 1.65818 1.04936 1.14975 1.25415 1.18760 0.87735 1.05391 0.96148 1.20430 0.89767 0.96677 0.97732 1.20967 0.96309 0.98555 0.97639 1.17904 0.84651 0.91539 0.93939 1.44385 1.04107 1.72493 1.12171 1.22507 0.90219 0.72546 0.84014 1.90584 1.80623 1.46345 1.21103 1.19312 0.83309 1.00077 1.00479 1.21103 0.91062 1.50104 0.93099 0.90516 1.24998 0.97710 0.94931 0.96769 1.69937 1.08735 1.50170 1.24864 0.86398 0.78897 0.78428 0.83219 1.20510 1.21175 1.19580 1.19924 0.88411 1.04860 1.02974 1.23629 0.98282 1.04029 0.98572 1.84925 0.94923 1.58169 1.23229 0.83897 0.82670 0.74967 0.92868 0.92665 0.92672 0.84282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.37 -4.44 18.54 41.84 0.78 -3.66 16 2 C 0.29 3.19 15.94 -22.47 -0.36 2.83 16 3 C 0.13 1.44 7.23 -16.78 -0.12 1.32 16 4 N -0.40 -4.94 10.54 -9.82 -0.10 -5.04 16 5 C 0.04 0.53 6.93 -85.13 -0.59 -0.06 16 6 C -0.02 -0.29 10.05 -39.19 -0.39 -0.69 16 7 C -0.11 -1.53 8.55 -39.96 -0.34 -1.88 16 8 C 0.22 2.93 6.27 -83.71 -0.53 2.40 16 9 N -0.69 -9.61 5.34 -9.87 -0.05 -9.67 16 10 C 0.52 9.89 7.56 -10.98 -0.08 9.81 16 11 O -0.51 -11.36 13.14 5.55 0.07 -11.28 16 12 C 0.01 0.16 5.46 -29.04 -0.16 0.01 16 13 C -0.52 -13.66 8.92 -34.44 -0.31 -13.97 16 14 H 0.08 2.12 6.75 -52.49 -0.35 1.76 16 15 C 0.06 1.54 5.46 -17.82 -0.10 1.44 16 16 N -0.90 -24.64 13.29 55.43 0.74 -23.90 16 17 Si 0.90 20.86 29.54 -169.99 -5.02 15.84 16 18 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 19 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 20 H -0.27 -6.26 7.11 56.52 0.40 -5.85 16 21 C -0.13 -1.48 9.98 -39.17 -0.39 -1.87 16 22 C -0.12 -1.40 6.54 -38.41 -0.25 -1.66 16 23 S 0.13 1.22 23.35 -107.50 -2.51 -1.29 16 24 H 0.14 1.47 8.06 -52.48 -0.42 1.05 16 25 H 0.16 2.35 6.40 -52.49 -0.34 2.02 16 26 H 0.41 4.44 8.82 -40.82 -0.36 4.08 16 27 H 0.05 1.19 8.14 -51.93 -0.42 0.77 16 28 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 29 H 0.26 6.88 8.31 -40.82 -0.34 6.54 16 30 H 0.14 1.18 8.06 -52.49 -0.42 0.76 16 LS Contribution 296.63 15.07 4.47 4.47 Total: -1.00 -29.87 296.63 -7.13 -37.00 By element: Atomic # 1 Polarization: 1.73 SS G_CDS: -1.88 Total: -0.15 kcal Atomic # 6 Polarization: 1.31 SS G_CDS: -3.62 Total: -2.31 kcal Atomic # 7 Polarization: -43.64 SS G_CDS: 1.36 Total: -42.28 kcal Atomic # 8 Polarization: -11.36 SS G_CDS: 0.07 Total: -11.28 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Atomic # 16 Polarization: 1.22 SS G_CDS: -2.51 Total: -1.29 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -29.87 -7.13 -37.00 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143198607.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.022 kcal (2) G-P(sol) polarization free energy of solvation -29.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.996 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds