Wall clock time and date at job start Tue Mar 31 2020 05:33:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13598 * 1 3 3 C 1.43201 * 179.97438 * 2 1 4 4 N 1.29090 * 124.87092 * 240.44135 * 3 2 1 5 5 C 1.33485 * 118.17663 * 179.97438 * 4 3 2 6 6 C 1.41542 * 128.70509 * 180.26823 * 5 4 3 7 7 C 1.35821 * 120.62660 * 180.21018 * 6 5 4 8 8 C 1.39557 * 120.76870 * 359.49850 * 7 6 5 9 9 N 1.39870 * 120.05363 * 180.27846 * 8 7 6 10 10 C 1.34778 * 119.99623 * 33.35330 * 9 8 7 11 11 O 1.21288 * 120.00194 * 5.28074 * 10 9 8 12 12 C 1.50700 * 119.99981 * 185.28043 * 10 9 8 13 13 C 1.50696 * 109.47273 * 180.02562 * 12 10 9 14 14 H 1.07996 * 120.00247 * 359.97438 * 13 12 10 15 15 C 1.37879 * 120.00053 * 179.97438 * 13 12 10 16 16 N 1.31512 * 120.00002 * 0.02562 * 15 13 12 17 17 Si 1.86799 * 120.00245 * 180.02562 * 15 13 12 18 18 H 1.48500 * 109.47327 * 89.99896 * 17 15 13 19 19 H 1.48500 * 109.46934 * 210.00512 * 17 15 13 20 20 H 1.48507 * 109.46652 * 329.99951 * 17 15 13 21 21 C 1.38209 * 119.90079 * 0.24901 * 8 7 6 22 22 C 1.39361 * 119.98323 * 0.02562 * 21 8 7 23 23 S 1.75852 * 124.86778 * 60.41584 * 3 2 1 24 24 H 1.08012 * 119.68820 * 359.96189 * 6 5 4 25 25 H 1.07997 * 119.61748 * 179.76710 * 7 6 5 26 26 H 0.96994 * 120.00161 * 213.36239 * 9 8 7 27 27 H 1.09000 * 109.47127 * 300.00191 * 12 10 9 28 28 H 1.09000 * 109.47292 * 59.99519 * 12 10 9 29 29 H 0.97001 * 120.00674 * 179.97438 * 16 15 13 30 30 H 1.07999 * 120.01061 * 180.02562 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 7 3.3058 0.5234 0.9213 5 6 4.6316 0.4468 0.7862 6 6 5.6392 0.9329 1.6533 7 6 6.9526 0.7667 1.3498 8 6 7.3375 0.1047 0.1831 9 7 8.6943 -0.0632 -0.1119 10 6 9.5844 -0.2357 0.8854 11 8 9.1991 -0.3413 2.0306 12 6 11.0583 -0.2974 0.5777 13 6 11.8307 -0.4950 1.8565 14 1 11.3068 -0.5681 2.7980 15 6 13.2063 -0.5824 1.8245 16 7 13.8445 -0.4929 0.6780 17 14 14.1638 -0.8280 3.4096 18 1 14.3256 -2.2810 3.6701 19 1 15.5014 -0.1957 3.2828 20 1 13.4252 -0.2023 4.5358 21 6 6.3758 -0.3853 -0.6802 22 6 5.0242 -0.2174 -0.3850 23 16 3.5736 -0.7112 -1.2547 24 1 5.3610 1.4445 2.5630 25 1 7.7079 1.1475 2.0212 26 1 8.9948 -0.0554 -1.0341 27 1 11.2540 -1.1309 -0.0970 28 1 11.3700 0.6338 0.1046 29 1 14.8123 -0.5540 0.6555 30 1 6.6717 -0.8983 -1.5834 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001143198607.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:43 Heat of formation + Delta-G solvation = 38.189487 kcal Electronic energy + Delta-G solvation = -18215.353402 eV Core-core repulsion = 15101.855851 eV Total energy + Delta-G solvation = -3113.497550 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 287.047 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.88696 -40.74269 -38.51494 -37.55116 -35.23911 -35.10000 -32.27745 -31.49551 -30.05852 -27.16233 -25.56591 -24.70186 -23.07114 -21.73582 -19.98478 -19.31818 -18.93781 -18.35273 -17.60832 -16.74336 -16.53318 -16.42928 -16.28893 -15.62556 -15.05816 -14.91245 -14.65546 -14.60934 -14.38679 -14.18989 -13.92516 -13.72460 -13.40915 -12.98710 -12.79234 -12.56419 -12.10483 -12.03370 -11.44540 -11.33528 -11.21029 -11.06483 -10.63541 -10.60458 -9.47331 -8.96212 -8.24352 -6.30705 -1.20943 -0.31243 0.04470 0.32875 0.66085 1.28289 1.43057 1.44239 1.55481 1.68038 1.98608 2.08992 2.23514 2.45850 2.59977 3.12542 3.25432 3.55378 3.89134 4.08000 4.16657 4.43217 4.62733 4.76453 4.90097 5.06327 5.17112 5.26141 5.27994 5.66941 5.76306 5.92520 6.03174 6.26562 6.52914 6.82589 7.25401 7.40320 8.87274 Molecular weight = 287.05amu Principal moments of inertia in cm(-1) A = 0.050981 B = 0.002907 C = 0.002796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 549.096229 B = 9629.327945 C =10010.759813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.386 5.386 2 C 0.306 3.694 3 C 0.131 3.869 4 N -0.422 5.422 5 C 0.039 3.961 6 C -0.027 4.027 7 C -0.123 4.123 8 C 0.196 3.804 9 N -0.666 5.666 10 C 0.525 3.475 11 O -0.550 6.550 12 C 0.009 3.991 13 C -0.536 4.536 14 H 0.058 0.942 15 C 0.013 3.987 16 N -0.922 5.922 17 Si 0.959 3.041 18 H -0.274 1.274 19 H -0.277 1.277 20 H -0.274 1.274 21 C -0.111 4.111 22 C -0.145 4.145 23 S 0.217 5.783 24 H 0.154 0.846 25 H 0.133 0.867 26 H 0.430 0.570 27 H 0.052 0.948 28 H 0.053 0.947 29 H 0.267 0.733 30 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.968 0.852 -8.011 18.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.065 5.065 2 C -0.013 4.013 3 C -0.150 4.150 4 N -0.138 5.138 5 C -0.084 4.084 6 C -0.049 4.049 7 C -0.146 4.146 8 C 0.095 3.905 9 N -0.313 5.313 10 C 0.316 3.684 11 O -0.426 6.426 12 C -0.030 4.030 13 C -0.574 4.574 14 H 0.077 0.923 15 C -0.186 4.186 16 N -0.562 5.562 17 Si 0.784 3.216 18 H -0.199 1.199 19 H -0.202 1.202 20 H -0.199 1.199 21 C -0.138 4.138 22 C -0.265 4.265 23 S 0.471 5.529 24 H 0.172 0.828 25 H 0.151 0.849 26 H 0.270 0.730 27 H 0.070 0.930 28 H 0.070 0.930 29 H 0.076 0.924 30 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -19.242 0.493 -7.777 20.760 hybrid contribution 1.950 0.313 1.089 2.255 sum -17.293 0.806 -6.688 18.559 Atomic orbital electron populations 1.81337 1.10960 1.07471 1.06764 1.23644 0.89760 0.93924 0.94004 1.21240 0.90662 1.05664 0.97452 1.65823 1.05047 1.16360 1.26601 1.18837 0.87809 1.05205 0.96515 1.20475 0.89279 0.96778 0.98326 1.20827 0.96437 0.99463 0.97863 1.17939 0.84138 0.93531 0.94888 1.43785 1.04138 1.71518 1.11819 1.21739 0.89765 0.72669 0.84263 1.90571 1.80985 1.48379 1.22653 1.19121 0.85549 0.99724 0.98633 1.21361 0.91832 1.50147 0.94083 0.92349 1.25698 0.98563 0.94767 0.99565 1.70003 1.09055 1.50860 1.26273 0.85535 0.77796 0.78498 0.79765 1.19932 1.20248 1.19861 1.20112 0.87713 1.03003 1.02929 1.23907 0.99455 1.04208 0.98942 1.84726 0.91973 1.55803 1.20374 0.82821 0.84894 0.73011 0.93039 0.92952 0.92421 0.81192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.39 -8.69 18.54 19.00 0.35 -8.34 16 2 C 0.31 6.07 15.94 88.33 1.41 7.47 16 3 C 0.13 2.52 7.23 86.34 0.62 3.14 16 4 N -0.42 -9.80 10.54 -184.97 -1.95 -11.75 16 5 C 0.04 0.91 6.93 40.20 0.28 1.19 16 6 C -0.03 -0.64 10.05 22.52 0.23 -0.42 16 7 C -0.12 -3.40 8.55 22.03 0.19 -3.21 16 8 C 0.20 4.96 6.27 38.17 0.24 5.20 16 9 N -0.67 -18.16 5.34 -303.52 -1.62 -19.78 16 10 C 0.52 20.42 7.56 87.66 0.66 21.09 16 11 O -0.55 -25.04 13.14 -3.05 -0.04 -25.08 16 12 C 0.01 0.41 5.46 29.10 0.16 0.57 16 13 C -0.54 -29.01 8.92 25.60 0.23 -28.78 16 14 H 0.06 3.33 6.75 -2.91 -0.02 3.31 16 15 C 0.01 0.71 5.46 84.66 0.46 1.17 16 16 N -0.92 -50.80 13.29 21.45 0.28 -50.51 16 17 Si 0.96 43.00 29.54 68.60 2.03 45.03 16 18 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 19 H -0.28 -11.95 7.11 99.48 0.71 -11.25 16 20 H -0.27 -12.28 7.11 99.48 0.71 -11.58 16 21 C -0.11 -2.14 9.98 22.53 0.22 -1.91 16 22 C -0.14 -2.85 6.54 23.03 0.15 -2.70 16 23 S 0.22 3.15 23.35 -56.49 -1.32 1.83 16 24 H 0.15 3.18 8.06 -2.90 -0.02 3.16 16 25 H 0.13 4.26 6.40 -2.91 -0.02 4.24 16 26 H 0.43 8.57 8.82 -92.71 -0.82 7.75 16 27 H 0.05 2.33 8.14 -2.39 -0.02 2.31 16 28 H 0.05 2.38 8.14 -2.39 -0.02 2.36 16 29 H 0.27 13.90 8.31 -92.71 -0.77 13.13 16 30 H 0.17 2.16 8.06 -2.91 -0.02 2.13 16 Total: -1.00 -64.48 296.63 3.00 -61.48 By element: Atomic # 1 Polarization: 3.90 SS G_CDS: 0.41 Total: 4.31 kcal Atomic # 6 Polarization: -2.04 SS G_CDS: 4.85 Total: 2.81 kcal Atomic # 7 Polarization: -87.45 SS G_CDS: -2.93 Total: -90.39 kcal Atomic # 8 Polarization: -25.04 SS G_CDS: -0.04 Total: -25.08 kcal Atomic # 14 Polarization: 43.00 SS G_CDS: 2.03 Total: 45.03 kcal Atomic # 16 Polarization: 3.15 SS G_CDS: -1.32 Total: 1.83 kcal Total: -64.48 3.00 -61.48 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143198607.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.674 kcal (2) G-P(sol) polarization free energy of solvation -64.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.484 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds