Wall clock time and date at job start Tue Mar 31 2020 05:57:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38244 * 119.99665 * 2 1 4 4 C 1.38202 * 120.02916 * 180.02562 * 3 2 1 5 5 C 1.38376 * 120.01140 * 0.26411 * 4 3 2 6 6 Cl 1.73599 * 120.00694 * 179.72002 * 5 4 3 7 7 C 1.38308 * 119.98833 * 359.50681 * 5 4 3 8 8 C 1.50704 * 120.01746 * 180.21370 * 7 5 4 9 9 N 1.46894 * 109.46930 * 270.27814 * 8 7 5 10 10 C 1.46898 * 111.00241 * 66.04334 * 9 8 7 11 11 C 1.46905 * 111.00018 * 189.99507 * 9 8 7 12 12 C 1.50701 * 109.47105 * 169.99733 * 11 9 8 13 13 H 1.08000 * 120.00031 * 0.02562 * 12 11 9 14 14 C 1.37878 * 119.99690 * 180.02562 * 12 11 9 15 15 N 1.31513 * 120.00113 * 0.02562 * 14 12 11 16 16 Si 1.86803 * 119.99720 * 180.02562 * 14 12 11 17 17 H 1.48494 * 109.47502 * 90.00044 * 16 14 12 18 18 H 1.48500 * 109.46606 * 210.00069 * 16 14 12 19 19 H 1.48499 * 109.47038 * 329.99331 * 16 14 12 20 20 C 1.38346 * 119.99348 * 180.02562 * 2 1 3 21 21 Cl 1.73596 * 120.00362 * 0.02562 * 20 2 1 22 22 H 1.09002 * 109.47522 * 89.99433 * 1 2 3 23 23 H 1.09000 * 109.46816 * 210.00061 * 1 2 3 24 24 H 1.08997 * 109.46768 * 329.99462 * 1 2 3 25 25 H 1.07996 * 119.98338 * 0.02892 * 3 2 1 26 26 H 1.08002 * 119.99100 * 179.97438 * 4 3 2 27 27 H 1.09005 * 109.46852 * 30.27337 * 8 7 5 28 28 H 1.08998 * 109.47512 * 150.27702 * 8 7 5 29 29 H 1.09009 * 109.47357 * 59.99982 * 10 9 8 30 30 H 1.09000 * 109.47322 * 179.97438 * 10 9 8 31 31 H 1.08994 * 109.47166 * 300.00230 * 10 9 8 32 32 H 1.08994 * 109.47038 * 290.00347 * 11 9 8 33 33 H 1.09008 * 109.46553 * 50.00155 * 11 9 8 34 34 H 0.96997 * 120.00092 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1973 0.0000 4 6 3.5801 1.1980 -0.0005 5 6 4.2729 0.0002 -0.0066 6 17 6.0089 0.0014 -0.0146 7 6 3.5821 -1.1980 -0.0018 8 6 4.3360 -2.5029 -0.0035 9 7 4.5804 -2.9253 -1.3890 10 6 5.4904 -1.9950 -2.0704 11 6 5.0990 -4.2989 -1.4369 12 6 5.1054 -4.7840 -2.8637 13 1 4.7592 -4.1365 -3.6558 14 6 5.5532 -6.0544 -3.1579 15 7 5.9743 -6.8430 -2.1933 16 14 5.5618 -6.6555 -4.9266 17 1 6.8634 -6.3193 -5.5574 18 1 5.3658 -8.1273 -4.9500 19 1 4.4628 -5.9978 -5.6782 20 6 2.1986 -1.1982 -0.0005 21 17 1.3305 -2.7015 -0.0019 22 1 -0.3634 0.0001 -1.0277 23 1 -0.3633 -0.8900 0.5138 24 1 -0.3633 0.8899 0.5139 25 1 1.6578 2.1323 0.0005 26 1 4.1195 2.1338 -0.0010 27 1 5.2887 -2.3728 0.5100 28 1 3.7474 -3.2633 0.5097 29 1 6.4428 -1.9651 -1.5410 30 1 5.6546 -2.3315 -3.0940 31 1 5.0496 -0.9982 -2.0815 32 1 6.1148 -4.3177 -1.0422 33 1 4.4632 -4.9485 -0.8352 34 1 6.2889 -7.7369 -2.4002 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001237327302.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:31 Heat of formation + Delta-G solvation = 12.365864 kcal Electronic energy + Delta-G solvation = -18393.882868 eV Core-core repulsion = 15378.329309 eV Total energy + Delta-G solvation = -3015.553559 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 287.054 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.80299 -36.78705 -36.38757 -36.02944 -33.05492 -32.26288 -31.17135 -27.39025 -26.78919 -26.63570 -24.01309 -22.19912 -21.10590 -19.97355 -17.06476 -16.40648 -16.28609 -15.20689 -14.98094 -14.49264 -14.02714 -13.92221 -13.75444 -13.63311 -12.84668 -12.63304 -12.46013 -12.08867 -11.91694 -11.87634 -11.58927 -11.28419 -11.03979 -10.97574 -10.86206 -10.68383 -10.49186 -10.39006 -10.22001 -9.81022 -9.19417 -8.69215 -8.50501 -8.38742 -7.17751 -5.98740 -3.99344 0.99972 1.12397 2.03139 2.46711 3.34437 3.40204 3.41424 3.45741 4.46168 4.60640 4.68284 4.82686 5.07235 5.24348 5.32670 5.37829 5.43080 5.50676 5.60259 5.73401 5.88692 6.07183 6.17052 6.22659 6.28023 6.31618 6.48960 6.58260 6.83991 7.31901 7.37919 7.83167 8.11144 8.23090 8.57324 9.07990 9.64282 11.12243 Molecular weight = 287.05amu Principal moments of inertia in cm(-1) A = 0.018429 B = 0.005435 C = 0.004594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1518.960106 B = 5150.337135 C = 6093.108924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.076 4.076 3 C -0.109 4.109 4 C -0.106 4.106 5 C -0.029 4.029 6 Cl -0.057 7.057 7 C -0.041 4.041 8 C 0.081 3.919 9 N -0.525 5.525 10 C 0.035 3.965 11 C 0.195 3.805 12 C -0.503 4.503 13 H 0.063 0.937 14 C 0.055 3.945 15 N -0.899 5.899 16 Si 0.897 3.103 17 H -0.282 1.282 18 H -0.287 1.287 19 H -0.273 1.273 20 C -0.011 4.011 21 Cl -0.043 7.043 22 H 0.077 0.923 23 H 0.074 0.926 24 H 0.069 0.931 25 H 0.136 0.864 26 H 0.135 0.865 27 H 0.043 0.957 28 H 0.086 0.914 29 H 0.017 0.983 30 H 0.071 0.929 31 H 0.044 0.956 32 H -0.009 1.009 33 H 0.031 0.969 34 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.924 16.666 6.861 19.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.077 4.077 3 C -0.127 4.127 4 C -0.125 4.125 5 C -0.057 4.057 6 Cl -0.028 7.028 7 C -0.043 4.043 8 C -0.047 4.047 9 N -0.250 5.250 10 C -0.114 4.114 11 C 0.070 3.930 12 C -0.542 4.542 13 H 0.081 0.919 14 C -0.146 4.146 15 N -0.539 5.539 16 Si 0.725 3.275 17 H -0.208 1.208 18 H -0.213 1.213 19 H -0.198 1.198 20 C -0.039 4.039 21 Cl -0.013 7.013 22 H 0.095 0.905 23 H 0.093 0.907 24 H 0.088 0.912 25 H 0.154 0.846 26 H 0.153 0.847 27 H 0.061 0.939 28 H 0.104 0.896 29 H 0.035 0.965 30 H 0.090 0.910 31 H 0.063 0.937 32 H 0.009 0.991 33 H 0.049 0.951 34 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -8.216 16.318 6.637 19.437 hybrid contribution 1.025 -0.552 -0.537 1.283 sum -7.190 15.765 6.100 18.370 Atomic orbital electron populations 1.20864 0.90080 1.03362 1.03108 1.19837 0.96924 0.91330 0.99656 1.20824 0.93152 0.97291 1.01452 1.21036 0.94246 0.96734 1.00513 1.20670 0.85155 0.94026 1.05846 1.98375 1.09067 1.98687 1.96681 1.19710 0.91992 0.95464 0.97120 1.21152 0.98014 0.91940 0.93637 1.62182 1.47486 1.04889 1.10406 1.22445 0.93545 0.95135 1.00262 1.19736 0.93241 0.82089 0.97903 1.21138 1.41532 0.98781 0.92701 0.91870 1.24969 0.95560 0.96716 0.97336 1.69958 1.43771 1.08493 1.31688 0.86518 0.78328 0.77798 0.84905 1.20794 1.21297 1.19788 1.20512 0.91245 0.87660 1.04490 1.98382 1.75472 1.31002 1.96465 0.90457 0.90672 0.91193 0.84622 0.84717 0.93865 0.89571 0.96484 0.91047 0.93731 0.99082 0.95139 0.92989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.10 9.61 36.00 0.35 -0.75 16 2 C -0.08 -0.92 5.88 -104.58 -0.62 -1.54 16 3 C -0.11 -1.14 9.70 -39.59 -0.38 -1.53 16 4 C -0.11 -1.23 9.83 -39.54 -0.39 -1.62 16 5 C -0.03 -0.42 5.22 -39.50 -0.21 -0.63 16 6 Cl -0.06 -0.82 23.97 -51.86 -1.24 -2.07 16 7 C -0.04 -0.66 4.90 -104.55 -0.51 -1.17 16 8 C 0.08 1.53 4.51 -4.98 -0.02 1.51 16 9 N -0.53 -11.65 4.74 -245.82 -1.17 -12.81 16 10 C 0.03 0.71 7.81 60.06 0.47 1.18 16 11 C 0.20 5.16 4.72 -4.97 -0.02 5.14 16 12 C -0.50 -14.31 8.46 -34.44 -0.29 -14.60 16 13 H 0.06 1.79 7.12 -52.49 -0.37 1.42 16 14 C 0.06 1.58 5.46 -17.82 -0.10 1.49 16 15 N -0.90 -27.00 13.29 55.43 0.74 -26.26 16 16 Si 0.90 21.96 29.54 -169.99 -5.02 16.94 16 17 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 18 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 19 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 20 C -0.01 -0.17 6.31 -39.50 -0.25 -0.42 16 21 Cl -0.04 -0.66 25.64 -51.86 -1.33 -1.99 16 22 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 23 H 0.07 0.73 6.90 -51.93 -0.36 0.37 16 24 H 0.07 0.49 8.09 -51.93 -0.42 0.07 16 25 H 0.14 1.00 8.06 -52.49 -0.42 0.57 16 26 H 0.13 1.23 8.06 -52.49 -0.42 0.81 16 27 H 0.04 0.82 6.89 -51.93 -0.36 0.46 16 28 H 0.09 1.66 6.69 -51.93 -0.35 1.31 16 29 H 0.02 0.34 7.07 -51.92 -0.37 -0.03 16 30 H 0.07 1.57 6.76 -51.93 -0.35 1.22 16 31 H 0.04 0.82 5.60 -51.93 -0.29 0.53 16 32 H -0.01 -0.24 8.12 -51.93 -0.42 -0.67 16 33 H 0.03 0.86 7.93 -51.92 -0.41 0.45 16 34 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 304.65 15.07 4.59 4.59 Total: -1.00 -30.37 304.65 -9.51 -39.88 By element: Atomic # 1 Polarization: -1.22 SS G_CDS: -4.10 Total: -5.32 kcal Atomic # 6 Polarization: -10.98 SS G_CDS: -1.97 Total: -12.96 kcal Atomic # 7 Polarization: -38.65 SS G_CDS: -0.43 Total: -39.08 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Atomic # 17 Polarization: -1.49 SS G_CDS: -2.57 Total: -4.06 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -30.37 -9.51 -39.88 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001237327302.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.249 kcal (2) G-P(sol) polarization free energy of solvation -30.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.883 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds