Wall clock time and date at job start Tue Mar 31 2020 05:34:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86797 * 120.00018 * 2 1 4 4 H 1.48500 * 109.47357 * 240.00499 * 3 2 1 5 5 H 1.48499 * 109.47102 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47050 * 120.00361 * 3 2 1 7 7 C 1.38816 * 119.99962 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00046 * 207.22796 * 7 2 1 9 9 N 1.36933 * 119.99831 * 27.22944 * 7 2 1 10 10 C 1.46507 * 120.00217 * 0.53135 * 9 7 2 11 11 C 1.50697 * 109.47058 * 275.78207 * 10 9 7 12 12 O 1.20837 * 119.99889 * 0.02562 * 11 10 9 13 13 O 1.34229 * 120.00184 * 179.97438 * 11 10 9 14 14 C 1.46506 * 120.00070 * 180.52849 * 9 7 2 15 15 C 1.50704 * 109.46900 * 89.99836 * 14 9 7 16 16 C 1.38204 * 120.00587 * 259.72532 * 15 14 9 17 17 C 1.38340 * 120.01174 * 179.76941 * 16 15 14 18 18 Cl 1.73595 * 119.98647 * 180.25428 * 17 16 15 19 19 C 1.38373 * 120.01801 * 0.50935 * 17 16 15 20 20 C 1.38164 * 120.01724 * 359.74743 * 19 17 16 21 21 C 1.38428 * 120.00186 * 80.00334 * 15 14 9 22 22 F 1.35096 * 120.01676 * 359.97438 * 21 15 14 23 23 H 0.96992 * 119.99453 * 359.97438 * 1 2 3 24 24 H 1.08999 * 109.46701 * 35.78301 * 10 9 7 25 25 H 1.08997 * 109.46987 * 155.78252 * 10 9 7 26 26 H 0.96700 * 117.00108 * 179.97438 * 13 11 10 27 27 H 1.09000 * 109.47211 * 210.00138 * 14 9 7 28 28 H 1.08997 * 109.46869 * 330.00236 * 14 9 7 29 29 H 1.08008 * 119.99685 * 0.02606 * 16 15 14 30 30 H 1.08004 * 119.98627 * 179.72196 * 19 17 16 31 31 H 1.07997 * 120.00318 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2853 2.7464 0.0006 6 1 3.1041 1.6963 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0005 -1.2542 0.4273 9 7 1.4394 -2.3221 -0.5437 10 6 0.1008 -2.2489 -1.1346 11 6 -0.9355 -2.4015 -0.0513 12 8 -0.5913 -2.5551 1.0968 13 8 -2.2410 -2.3657 -0.3615 14 6 2.1672 -3.5935 -0.5339 15 6 1.8430 -4.3481 0.7297 16 6 2.7278 -4.3309 1.7913 17 6 2.4281 -5.0196 2.9531 18 17 3.5369 -4.9920 4.2885 19 6 1.2474 -5.7347 3.0489 20 6 0.3646 -5.7570 1.9863 21 6 0.6617 -5.0634 0.8251 22 9 -0.2011 -5.0848 -0.2142 23 1 -0.4849 0.8400 0.0004 24 1 -0.0269 -1.2846 -1.6264 25 1 -0.0176 -3.0483 -1.8660 26 1 -2.8684 -2.4684 0.3672 27 1 1.8715 -4.1882 -1.3982 28 1 3.2389 -3.3991 -0.5761 29 1 3.6514 -3.7762 1.7155 30 1 1.0161 -6.2759 3.9545 31 1 -0.5566 -6.3155 2.0612 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601072521.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:09 Heat of formation + Delta-G solvation = -85.697179 kcal Electronic energy + Delta-G solvation = -21425.750397 eV Core-core repulsion = 17841.775036 eV Total energy + Delta-G solvation = -3583.975361 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 287.051 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -48.42725 -38.90570 -38.42622 -36.28682 -35.66908 -34.29043 -32.28473 -30.53090 -29.73476 -27.45112 -25.86186 -22.81643 -22.42957 -20.97874 -19.97311 -17.34179 -16.89786 -16.57065 -16.10457 -15.88439 -15.63707 -14.98298 -14.77105 -13.99656 -13.90399 -13.51564 -13.40815 -13.09676 -13.01558 -12.80547 -12.21846 -11.59633 -11.48908 -11.19786 -11.15536 -10.86273 -10.80226 -10.59498 -10.55105 -10.29765 -10.00227 -9.91201 -9.09021 -8.65721 -8.51233 -8.04493 -7.29366 -6.04278 -3.25503 1.44319 1.57384 2.39372 3.33103 3.39678 3.40612 3.84336 4.04554 4.32975 4.59793 4.72569 5.01144 5.10322 5.24174 5.37763 5.50219 5.63996 5.81705 6.15373 6.23366 6.31855 6.34278 6.46004 6.50586 6.76484 6.95875 7.08954 7.19340 7.61355 7.96764 8.02517 8.91110 9.49486 9.64700 9.99442 11.07037 Molecular weight = 287.05amu Principal moments of inertia in cm(-1) A = 0.015550 B = 0.007657 C = 0.005885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1800.155139 B = 3655.895431 C = 4756.984340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.004 3.996 3 Si 0.910 3.090 4 H -0.282 1.282 5 H -0.291 1.291 6 H -0.283 1.283 7 C -0.251 4.251 8 H 0.085 0.915 9 N -0.558 5.558 10 C 0.184 3.816 11 C 0.486 3.514 12 O -0.516 6.516 13 O -0.544 6.544 14 C 0.178 3.822 15 C -0.100 4.100 16 C -0.072 4.072 17 C -0.045 4.045 18 Cl -0.084 7.084 19 C -0.100 4.100 20 C -0.144 4.144 21 C 0.125 3.875 22 F -0.139 7.139 23 H 0.260 0.740 24 H 0.116 0.884 25 H 0.053 0.947 26 H 0.377 0.623 27 H 0.061 0.939 28 H 0.074 0.926 29 H 0.135 0.865 30 H 0.131 0.869 31 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.805 -10.325 0.814 10.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.194 4.194 3 Si 0.739 3.261 4 H -0.208 1.208 5 H -0.217 1.217 6 H -0.209 1.209 7 C -0.380 4.380 8 H 0.103 0.897 9 N -0.276 5.276 10 C 0.055 3.945 11 C 0.326 3.674 12 O -0.402 6.402 13 O -0.354 6.354 14 C 0.051 3.949 15 C -0.104 4.104 16 C -0.092 4.092 17 C -0.072 4.072 18 Cl -0.055 7.055 19 C -0.120 4.120 20 C -0.164 4.164 21 C 0.105 3.895 22 F -0.118 7.118 23 H 0.071 0.929 24 H 0.133 0.867 25 H 0.071 0.929 26 H 0.232 0.768 27 H 0.079 0.921 28 H 0.092 0.908 29 H 0.153 0.847 30 H 0.149 0.851 31 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 2.174 -10.113 0.845 10.378 hybrid contribution -0.439 0.995 1.064 1.521 sum 1.735 -9.118 1.908 9.476 Atomic orbital electron populations 1.69833 1.05400 1.26250 1.52957 1.24756 0.95217 0.98540 1.00906 0.86218 0.78999 0.82663 0.78181 1.20805 1.21662 1.20936 1.19295 0.98555 0.84996 1.35109 0.89741 1.44621 1.12708 1.04160 1.66098 1.20712 0.80874 1.02318 0.90564 1.24980 0.80706 0.69561 0.92195 1.90519 1.80936 1.46207 1.22524 1.84624 1.19728 1.86714 1.44383 1.20079 0.97695 0.86104 0.91057 1.21120 0.93100 0.95380 1.00838 1.20707 1.00113 0.97674 0.90693 1.20822 0.93154 1.03239 0.89936 1.98332 1.62668 1.97790 1.46696 1.20593 0.92599 0.99989 0.98782 1.20860 1.00620 1.02378 0.92499 1.17447 0.88531 0.98570 0.84934 1.91446 1.68751 1.94979 1.56612 0.92938 0.86671 0.92887 0.76764 0.92118 0.90814 0.84725 0.85106 0.85041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.85 8.76 55.49 0.49 -24.36 16 2 C 0.00 0.10 4.97 -17.43 -0.09 0.01 16 3 Si 0.91 21.08 29.63 -169.99 -5.04 16.04 16 4 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 5 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 6 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 7 C -0.25 -6.46 9.53 -15.06 -0.14 -6.61 16 8 H 0.08 2.12 7.96 -52.49 -0.42 1.70 16 9 N -0.56 -13.02 2.06 -175.98 -0.36 -13.38 16 10 C 0.18 4.26 5.11 -5.19 -0.03 4.23 16 11 C 0.49 11.73 4.55 36.00 0.16 11.90 16 12 O -0.52 -13.88 14.57 -18.76 -0.27 -14.16 16 13 O -0.54 -11.58 13.42 -39.25 -0.53 -12.11 16 14 C 0.18 3.41 5.56 -5.19 -0.03 3.38 16 15 C -0.10 -1.90 4.99 -104.56 -0.52 -2.42 16 16 C -0.07 -1.29 9.45 -39.56 -0.37 -1.66 16 17 C -0.04 -0.74 6.32 -39.49 -0.25 -0.99 16 18 Cl -0.08 -1.23 28.95 -51.86 -1.50 -2.73 16 19 C -0.10 -1.56 9.83 -39.56 -0.39 -1.95 16 20 C -0.14 -2.39 10.03 -39.52 -0.40 -2.79 16 21 C 0.13 2.37 5.39 -39.42 -0.21 2.15 16 22 F -0.14 -2.69 14.33 2.25 0.03 -2.66 16 23 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 24 H 0.12 2.88 6.23 -51.93 -0.32 2.56 16 25 H 0.05 1.08 7.71 -51.93 -0.40 0.68 16 26 H 0.38 6.59 9.10 45.56 0.41 7.00 16 27 H 0.06 1.05 7.66 -51.93 -0.40 0.65 16 28 H 0.07 1.29 7.90 -51.93 -0.41 0.88 16 29 H 0.13 2.25 8.04 -52.48 -0.42 1.83 16 30 H 0.13 1.68 8.06 -52.48 -0.42 1.25 16 31 H 0.13 1.85 8.06 -52.49 -0.42 1.43 16 LS Contribution 287.81 15.07 4.34 4.34 Total: -1.00 -30.63 287.81 -7.05 -37.67 By element: Atomic # 1 Polarization: 8.03 SS G_CDS: -1.94 Total: 6.09 kcal Atomic # 6 Polarization: 7.51 SS G_CDS: -2.26 Total: 5.25 kcal Atomic # 7 Polarization: -37.87 SS G_CDS: 0.12 Total: -37.74 kcal Atomic # 8 Polarization: -25.46 SS G_CDS: -0.80 Total: -26.26 kcal Atomic # 9 Polarization: -2.69 SS G_CDS: 0.03 Total: -2.66 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.04 Total: 16.04 kcal Atomic # 17 Polarization: -1.23 SS G_CDS: -1.50 Total: -2.73 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -30.63 -7.05 -37.67 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601072521.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.024 kcal (2) G-P(sol) polarization free energy of solvation -30.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.673 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds