Wall clock time and date at job start Tue Mar 31 2020 05:27:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 109.47099 * 2 1 4 4 H 1.09000 * 109.47414 * 177.96324 * 3 2 1 5 5 C 1.50701 * 109.47180 * 57.96609 * 3 2 1 6 6 H 1.07995 * 120.00076 * 240.00179 * 5 3 2 7 7 C 1.37873 * 120.00205 * 60.00040 * 5 3 2 8 8 N 1.31519 * 120.00092 * 0.02562 * 7 5 3 9 9 Si 1.86804 * 120.00284 * 180.02562 * 7 5 3 10 10 H 1.48496 * 109.46933 * 59.99856 * 9 7 5 11 11 H 1.48496 * 109.47138 * 180.02562 * 9 7 5 12 12 H 1.48498 * 109.46567 * 300.00001 * 9 7 5 13 13 N 1.46898 * 109.47217 * 297.96393 * 3 2 1 14 14 C 1.46895 * 111.00028 * 273.75158 * 13 3 2 15 15 C 1.50706 * 109.47003 * 174.89990 * 14 13 3 16 16 N 1.30852 * 125.89132 * 269.68478 * 15 14 13 17 17 N 1.40085 * 108.21849 * 179.88560 * 16 15 14 18 18 H 0.96993 * 126.03526 * 180.15120 * 17 16 15 19 19 C 1.35019 * 107.92685 * 0.38624 * 17 16 15 20 20 C 1.35361 * 107.73223 * 359.77025 * 19 17 16 21 21 Br 1.89106 * 126.04669 * 179.97438 * 20 19 17 22 22 H 1.09000 * 109.47584 * 294.45018 * 1 2 3 23 23 H 1.09008 * 109.46765 * 174.44908 * 1 2 3 24 24 H 1.09003 * 109.46990 * 54.45649 * 1 2 3 25 25 H 1.09002 * 109.47162 * 119.99783 * 2 1 3 26 26 H 1.08996 * 109.47939 * 239.99599 * 2 1 3 27 27 H 0.97002 * 120.00361 * 180.02562 * 8 7 5 28 28 H 1.00898 * 110.99953 * 149.78993 * 13 3 2 29 29 H 1.09005 * 109.47061 * 294.89261 * 14 13 3 30 30 H 1.08997 * 109.47274 * 54.89776 * 14 13 3 31 31 H 1.07997 * 126.13486 * 179.77418 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 3.1293 1.4428 0.0365 5 6 1.4969 2.1673 1.2045 6 1 0.8798 3.0440 1.0743 7 6 1.7877 1.7113 2.4727 8 7 2.5396 0.6439 2.6313 9 14 1.1140 2.6093 3.9657 10 1 -0.3701 2.6084 3.9157 11 1 1.5686 1.9242 5.2022 12 1 1.6085 4.0095 3.9658 13 7 1.5909 2.1207 -1.2233 14 6 2.5281 1.8857 -2.3297 15 6 1.9735 2.4891 -3.5945 16 7 1.2059 1.8807 -4.4622 17 7 0.9072 2.7831 -5.4912 18 1 0.3546 2.6011 -6.2672 19 6 1.5288 3.9494 -5.2145 20 6 2.1953 3.7944 -4.0467 21 35 3.2421 5.1093 -3.1798 22 1 -0.3634 0.4253 0.9355 23 1 -0.3633 -1.0229 -0.0994 24 1 -0.3633 0.5974 -0.8362 25 1 1.8933 -0.5138 0.8900 26 1 1.8934 -0.5138 -0.8899 27 1 2.7440 0.3228 3.5235 28 1 1.4615 3.1083 -1.0624 29 1 3.4877 2.3476 -2.0974 30 1 2.6650 0.8133 -2.4684 31 1 1.4994 4.8452 -5.8170 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001659341908.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:23 Heat of formation + Delta-G solvation = 71.139308 kcal Electronic energy + Delta-G solvation = -15306.538670 eV Core-core repulsion = 12670.689619 eV Total energy + Delta-G solvation = -2635.849050 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 287.033 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.16898 -36.29931 -33.29417 -31.82106 -31.31579 -30.13663 -28.57708 -26.78039 -24.46631 -23.01715 -21.37223 -19.64164 -18.90320 -18.11830 -16.34978 -15.03119 -14.84783 -14.41982 -13.70467 -13.49403 -13.44762 -13.28773 -12.56188 -12.03605 -11.74917 -11.29477 -10.98478 -10.90039 -10.82746 -10.71138 -10.33064 -10.07226 -9.92692 -9.70246 -9.43436 -9.26346 -8.72561 -8.45590 -8.41157 -7.20483 -5.96382 -4.01164 1.75079 1.83136 2.62050 2.96014 3.35214 3.39574 3.42659 4.45293 4.65923 4.82892 5.27589 5.34815 5.49540 5.69191 6.13333 6.14524 6.47713 6.61118 6.80035 6.93840 7.14150 7.32890 7.35086 7.56629 7.64877 7.80966 7.85417 7.90101 8.31330 8.42947 8.70359 9.07021 9.63013 11.09745 Molecular weight = 287.03amu Principal moments of inertia in cm(-1) A = 0.021514 B = 0.005725 C = 0.004834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1301.167668 B = 4889.923242 C = 5791.427644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.102 4.102 3 C 0.218 3.782 4 H 0.004 0.996 5 C -0.511 4.511 6 H 0.059 0.941 7 C 0.065 3.935 8 N -0.889 5.889 9 Si 0.892 3.108 10 H -0.277 1.277 11 H -0.288 1.288 12 H -0.278 1.278 13 N -0.675 5.675 14 C 0.130 3.870 15 C 0.129 3.871 16 N -0.268 5.268 17 N -0.475 5.475 18 H 0.442 0.558 19 C 0.089 3.911 20 C -0.237 4.237 21 Br -0.021 7.021 22 H 0.051 0.949 23 H 0.011 0.989 24 H 0.047 0.953 25 H 0.085 0.915 26 H 0.011 0.989 27 H 0.261 0.739 28 H 0.334 0.666 29 H 0.047 0.953 30 H 0.082 0.918 31 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.573 8.098 -16.035 17.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.140 4.140 3 C 0.111 3.889 4 H 0.021 0.979 5 C -0.550 4.550 6 H 0.077 0.923 7 C -0.137 4.137 8 N -0.528 5.528 9 Si 0.720 3.280 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.204 1.204 13 N -0.307 5.307 14 C -0.002 4.002 15 C -0.040 4.040 16 N -0.091 5.091 17 N -0.182 5.182 18 H 0.286 0.714 19 C -0.062 4.062 20 C -0.328 4.328 21 Br 0.062 6.938 22 H 0.070 0.930 23 H 0.031 0.969 24 H 0.066 0.934 25 H 0.104 0.896 26 H 0.029 0.971 27 H 0.071 0.929 28 H 0.151 0.849 29 H 0.065 0.935 30 H 0.101 0.899 31 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges 0.016 6.836 -16.046 17.442 hybrid contribution 0.209 1.481 0.594 1.609 sum 0.225 8.317 -15.452 17.550 Atomic orbital electron populations 1.21430 0.97542 0.97090 1.01521 1.21429 0.95120 0.98156 0.99338 1.19132 0.93480 0.91582 0.84694 0.97877 1.21126 1.31633 1.11933 0.90269 0.92330 1.24855 0.95099 0.95011 0.98748 1.69879 1.37381 1.23094 1.22429 0.86653 0.79432 0.79779 0.82106 1.20262 1.21392 1.20366 1.60642 1.46623 1.16627 1.06840 1.20349 0.93725 1.00206 0.85921 1.22513 0.94378 0.90820 0.96334 1.77547 1.18838 1.14456 0.98273 1.46333 1.41166 1.09026 1.21643 0.71399 1.22354 0.95080 0.91935 0.96802 1.21844 1.13172 0.96721 1.01082 1.96623 1.68157 1.50323 1.78705 0.93027 0.96949 0.93424 0.89630 0.97053 0.92945 0.84854 0.93462 0.89920 0.80117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.76 9.46 37.15 0.35 -2.41 16 2 C -0.10 -2.51 5.58 -26.73 -0.15 -2.66 16 3 C 0.22 5.44 2.30 -68.86 -0.16 5.28 16 4 H 0.00 0.10 7.84 -51.93 -0.41 -0.31 16 5 C -0.51 -13.74 7.34 -34.44 -0.25 -13.99 16 6 H 0.06 1.57 7.60 -52.49 -0.40 1.17 16 7 C 0.06 1.77 5.30 -17.82 -0.09 1.67 16 8 N -0.89 -25.14 11.34 55.43 0.63 -24.51 16 9 Si 0.89 21.28 29.54 -169.99 -5.02 16.26 16 10 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 11 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 12 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 13 N -0.68 -14.54 5.50 -109.22 -0.60 -15.14 16 14 C 0.13 2.44 5.84 -4.98 -0.03 2.41 16 15 C 0.13 2.18 6.78 -82.38 -0.56 1.62 16 16 N -0.27 -4.36 12.70 33.68 0.43 -3.93 16 17 N -0.47 -5.39 7.36 30.47 0.22 -5.16 16 18 H 0.44 3.23 8.96 -182.62 -1.64 1.59 16 19 C 0.09 0.97 11.96 -17.18 -0.21 0.77 16 20 C -0.24 -3.37 6.52 -39.98 -0.26 -3.63 16 21 Br -0.02 -0.28 33.62 -68.01 -2.29 -2.57 16 22 H 0.05 1.28 7.37 -51.93 -0.38 0.89 16 23 H 0.01 0.25 8.14 -51.92 -0.42 -0.18 16 24 H 0.05 1.09 7.50 -51.93 -0.39 0.70 16 25 H 0.09 2.32 6.13 -51.93 -0.32 2.00 16 26 H 0.01 0.25 7.43 -51.93 -0.39 -0.13 16 27 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 28 H 0.33 7.21 8.24 -39.29 -0.32 6.89 16 29 H 0.05 0.88 7.87 -51.93 -0.41 0.47 16 30 H 0.08 1.61 7.39 -51.93 -0.38 1.22 16 31 H 0.18 1.20 8.06 -52.49 -0.42 0.78 16 LS Contribution 283.28 15.07 4.27 4.27 Total: -1.00 -29.95 283.28 -8.73 -38.68 By element: Atomic # 1 Polarization: 8.07 SS G_CDS: -5.02 Total: 3.05 kcal Atomic # 6 Polarization: -9.58 SS G_CDS: -1.36 Total: -10.94 kcal Atomic # 7 Polarization: -49.43 SS G_CDS: 0.68 Total: -48.75 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Atomic # 35 Polarization: -0.28 SS G_CDS: -2.29 Total: -2.57 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -29.95 -8.73 -38.68 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001659341908.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.816 kcal (2) G-P(sol) polarization free energy of solvation -29.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.677 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds