Wall clock time and date at job start Tue Mar 31 2020 06:02:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31008 * 1 3 3 C 1.50699 * 119.99700 * 2 1 4 4 N 1.46506 * 109.47106 * 125.00371 * 3 2 1 5 5 C 1.46499 * 119.99537 * 270.00004 * 4 3 2 6 6 C 1.50697 * 109.46949 * 269.99553 * 5 4 3 7 7 H 1.08004 * 120.00186 * 0.02562 * 6 5 4 8 8 C 1.37881 * 120.00081 * 180.02562 * 6 5 4 9 9 N 1.31519 * 120.00096 * 0.02562 * 8 6 5 10 10 Si 1.86802 * 120.00103 * 180.02562 * 8 6 5 11 11 H 1.48498 * 109.46927 * 59.99717 * 10 8 6 12 12 H 1.48496 * 109.47287 * 179.97438 * 10 8 6 13 13 H 1.48501 * 109.47040 * 299.99940 * 10 8 6 14 14 C 1.34777 * 120.00264 * 89.99354 * 4 3 2 15 15 O 1.21283 * 119.99750 * 180.02562 * 14 4 3 16 16 C 1.50702 * 119.99928 * 0.28128 * 14 4 3 17 17 H 1.09000 * 109.38226 * 334.71828 * 16 14 4 18 18 C 1.52633 * 109.37960 * 214.93487 * 16 14 4 19 19 S 1.81178 * 109.98972 * 172.98797 * 18 16 14 20 20 C 1.81171 * 103.31490 * 62.61523 * 19 18 16 21 21 C 1.52640 * 109.99399 * 297.38876 * 20 19 18 22 22 S 1.81171 * 109.38274 * 94.50828 * 16 14 4 23 23 H 1.07995 * 119.99516 * 359.97438 * 1 2 3 24 24 H 1.07992 * 119.99585 * 180.02562 * 1 2 3 25 25 H 1.07999 * 120.00412 * 180.02562 * 2 1 3 26 26 H 1.08994 * 109.47456 * 5.00330 * 3 2 1 27 27 H 1.09001 * 109.47250 * 244.99774 * 3 2 1 28 28 H 1.09001 * 109.47567 * 29.99407 * 5 4 3 29 29 H 1.09005 * 109.47076 * 149.99913 * 5 4 3 30 30 H 0.96991 * 119.99957 * 180.02562 * 9 8 6 31 31 H 1.09002 * 109.38793 * 293.14612 * 18 16 14 32 32 H 1.09004 * 109.38540 * 52.83350 * 18 16 14 33 33 H 1.09009 * 109.38471 * 57.54270 * 20 19 18 34 34 H 1.08994 * 109.38911 * 177.32925 * 20 19 18 35 35 H 1.08997 * 109.38689 * 187.01158 * 21 20 19 36 36 H 1.09002 * 109.38259 * 306.68922 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9939 1.3319 1.1314 5 6 2.5589 1.8649 2.4248 6 6 2.8443 3.3436 2.4804 7 1 3.3034 3.8371 1.6365 8 6 2.5194 4.0665 3.6086 9 7 1.9608 3.4656 4.6365 10 14 2.8725 5.8996 3.6772 11 1 2.1358 6.5867 2.5862 12 1 2.4317 6.4399 4.9883 13 1 4.3302 6.1294 3.5114 14 6 4.2498 0.8662 0.9824 15 8 5.0197 0.8880 1.9192 16 6 4.6991 0.3236 -0.3498 17 1 3.8318 -0.0298 -0.9076 18 6 5.6640 -0.8373 -0.1245 19 16 6.0540 -1.6341 -1.7043 20 6 6.8747 -0.3197 -2.6431 21 6 5.9098 0.8413 -2.8683 22 16 5.5225 1.6372 -1.2873 23 1 -0.5399 0.9353 0.0004 24 1 -0.5399 -0.9353 0.0004 25 1 1.8501 -0.9353 -0.0004 26 1 1.3586 2.1316 0.0896 27 1 2.6213 1.4027 -0.9314 28 1 1.4888 1.6967 2.5459 29 1 3.0990 1.3603 3.2260 30 1 1.7319 3.9742 5.4300 31 1 6.5821 -0.4622 0.3278 32 1 5.2044 -1.5653 0.5440 33 1 7.7429 0.0342 -2.0869 34 1 7.1980 -0.7116 -3.6074 35 1 6.3693 1.5692 -3.5369 36 1 4.9917 0.4662 -3.3206 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000816803267.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:07 Heat of formation + Delta-G solvation = -11.994494 kcal Electronic energy + Delta-G solvation = -18847.076477 eV Core-core repulsion = 15970.387081 eV Total energy + Delta-G solvation = -2876.689396 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 287.075 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.35634 -35.83462 -33.96659 -33.25059 -32.44675 -32.03120 -27.85821 -25.68886 -24.76724 -24.04299 -22.30051 -20.05437 -18.85556 -17.50427 -16.78500 -16.50661 -16.05806 -15.63831 -15.12246 -14.67568 -14.45861 -14.32201 -14.16251 -13.63049 -13.46113 -13.06541 -12.79809 -12.67655 -12.12028 -11.89658 -11.67531 -11.35810 -11.18719 -11.09318 -10.92120 -10.60371 -10.39600 -10.20139 -9.82039 -9.68525 -9.24791 -9.09938 -8.43976 -8.11447 -7.78983 -7.77375 -6.05439 -4.10183 1.22652 1.42961 2.13875 2.34952 2.40483 3.32636 3.36748 3.39158 3.46834 3.83038 4.36168 4.44143 4.48194 4.72492 4.82927 4.89846 4.99144 5.20801 5.27606 5.29072 5.35125 5.36127 5.45508 5.61386 5.73090 5.98075 6.16066 6.74675 6.84679 6.99536 7.36951 7.45816 7.90375 8.19932 8.24963 8.78784 8.96945 9.54770 11.02760 Molecular weight = 287.08amu Principal moments of inertia in cm(-1) A = 0.018893 B = 0.005337 C = 0.004758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1481.657571 B = 5245.092612 C = 5883.940283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.173 4.173 3 C 0.131 3.869 4 N -0.580 5.580 5 C 0.248 3.752 6 C -0.527 4.527 7 H 0.059 0.941 8 C 0.063 3.937 9 N -0.895 5.895 10 Si 0.898 3.102 11 H -0.276 1.276 12 H -0.286 1.286 13 H -0.276 1.276 14 C 0.530 3.470 15 O -0.522 6.522 16 C -0.090 4.090 17 H 0.116 0.884 18 C -0.067 4.067 19 S -0.254 6.254 20 C -0.089 4.089 21 C -0.102 4.102 22 S -0.194 6.194 23 H 0.100 0.900 24 H 0.095 0.905 25 H 0.104 0.896 26 H 0.092 0.908 27 H 0.078 0.922 28 H 0.035 0.965 29 H 0.044 0.956 30 H 0.264 0.736 31 H 0.108 0.892 32 H 0.118 0.882 33 H 0.098 0.902 34 H 0.114 0.886 35 H 0.118 0.882 36 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.468 -8.501 -16.268 18.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.192 4.192 3 C 0.007 3.993 4 N -0.310 5.310 5 C 0.129 3.871 6 C -0.566 4.566 7 H 0.077 0.923 8 C -0.139 4.139 9 N -0.533 5.533 10 Si 0.725 3.275 11 H -0.202 1.202 12 H -0.212 1.212 13 H -0.201 1.201 14 C 0.311 3.689 15 O -0.399 6.399 16 C -0.224 4.224 17 H 0.134 0.866 18 C -0.217 4.217 19 S -0.026 6.026 20 C -0.239 4.239 21 C -0.252 4.252 22 S 0.033 5.967 23 H 0.118 0.882 24 H 0.113 0.887 25 H 0.122 0.878 26 H 0.110 0.890 27 H 0.096 0.904 28 H 0.053 0.947 29 H 0.062 0.938 30 H 0.074 0.926 31 H 0.126 0.874 32 H 0.136 0.864 33 H 0.116 0.884 34 H 0.133 0.867 35 H 0.136 0.864 36 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 3.819 -8.446 -15.569 18.120 hybrid contribution 0.030 0.954 0.042 0.956 sum 3.849 -7.492 -15.528 17.665 Atomic orbital electron populations 1.23832 0.95771 1.01871 1.00044 1.23425 0.96528 0.98835 1.00396 1.20691 0.93164 0.95568 0.89856 1.48172 1.09933 1.58990 1.13909 1.19350 0.95565 0.93940 0.78230 1.21383 1.40752 0.93113 1.01370 0.92320 1.24918 0.94973 0.98788 0.95266 1.69923 1.41955 1.36302 1.05167 0.86557 0.78918 0.84836 0.77147 1.20190 1.21171 1.20120 1.19209 0.83016 0.79278 0.87357 1.90705 1.52559 1.55590 1.41002 1.23666 1.01340 0.97393 0.99981 0.86552 1.23414 1.03073 0.99100 0.96148 1.86689 1.77079 1.22798 1.16023 1.23543 1.00515 0.96466 1.03411 1.23655 1.02700 1.00525 0.98347 1.87435 1.76640 1.19743 1.12876 0.88166 0.88667 0.87824 0.89003 0.90425 0.94653 0.93765 0.92640 0.87355 0.86418 0.88370 0.86746 0.86382 0.88522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.25 14.32 29.01 0.42 -1.84 16 2 C -0.17 -2.43 9.41 -36.03 -0.34 -2.76 16 3 C 0.13 2.14 5.45 -5.19 -0.03 2.11 16 4 N -0.58 -12.13 2.44 -176.43 -0.43 -12.56 16 5 C 0.25 6.42 5.16 -5.20 -0.03 6.40 16 6 C -0.53 -14.91 9.39 -34.44 -0.32 -15.23 16 7 H 0.06 1.67 7.81 -52.48 -0.41 1.26 16 8 C 0.06 1.79 5.46 -17.82 -0.10 1.69 16 9 N -0.89 -26.49 13.29 55.43 0.74 -25.75 16 10 Si 0.90 21.96 29.54 -169.99 -5.02 16.93 16 11 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 12 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 13 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 14 C 0.53 10.88 6.65 -10.98 -0.07 10.81 16 15 O -0.52 -12.94 15.98 5.55 0.09 -12.85 16 16 C -0.09 -1.37 1.92 -28.07 -0.05 -1.43 16 17 H 0.12 1.59 5.93 -51.92 -0.31 1.28 16 18 C -0.07 -0.93 5.08 36.97 0.19 -0.74 16 19 S -0.25 -2.92 22.05 -107.50 -2.37 -5.29 16 20 C -0.09 -0.81 6.25 36.97 0.23 -0.58 16 21 C -0.10 -0.97 6.26 36.97 0.23 -0.74 16 22 S -0.19 -2.84 21.24 -107.50 -2.28 -5.12 16 23 H 0.10 1.25 7.84 -52.49 -0.41 0.84 16 24 H 0.09 1.04 8.06 -52.49 -0.42 0.61 16 25 H 0.10 1.37 7.99 -52.49 -0.42 0.95 16 26 H 0.09 1.56 7.72 -51.93 -0.40 1.16 16 27 H 0.08 1.12 6.30 -51.93 -0.33 0.79 16 28 H 0.04 0.93 8.07 -51.93 -0.42 0.51 16 29 H 0.04 1.29 7.42 -51.93 -0.39 0.91 16 30 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 31 H 0.11 1.63 8.06 -51.92 -0.42 1.22 16 32 H 0.12 1.62 8.13 -51.91 -0.42 1.20 16 33 H 0.10 0.92 8.14 -51.91 -0.42 0.50 16 34 H 0.11 0.78 8.14 -51.92 -0.42 0.36 16 35 H 0.12 0.90 8.14 -51.92 -0.42 0.47 16 36 H 0.10 0.86 8.14 -51.92 -0.42 0.43 16 LS Contribution 325.41 15.07 4.90 4.90 Total: -1.00 -32.09 325.41 -9.42 -41.51 By element: Atomic # 1 Polarization: 5.71 SS G_CDS: -5.17 Total: 0.54 kcal Atomic # 6 Polarization: -2.43 SS G_CDS: 0.12 Total: -2.31 kcal Atomic # 7 Polarization: -38.63 SS G_CDS: 0.31 Total: -38.32 kcal Atomic # 8 Polarization: -12.94 SS G_CDS: 0.09 Total: -12.85 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.93 kcal Atomic # 16 Polarization: -5.76 SS G_CDS: -4.65 Total: -10.41 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -32.09 -9.42 -41.51 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000816803267.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.516 kcal (2) G-P(sol) polarization free energy of solvation -32.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.510 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds