Wall clock time and date at job start Tue Mar 31 2020 06:02:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31008 * 1 3 3 C 1.50699 * 119.99700 * 2 1 4 4 N 1.46506 * 109.47106 * 125.00371 * 3 2 1 5 5 C 1.46499 * 119.99537 * 270.00004 * 4 3 2 6 6 C 1.50697 * 109.46949 * 269.99553 * 5 4 3 7 7 H 1.08004 * 120.00186 * 0.02562 * 6 5 4 8 8 C 1.37881 * 120.00081 * 180.02562 * 6 5 4 9 9 N 1.31519 * 120.00096 * 0.02562 * 8 6 5 10 10 Si 1.86802 * 120.00103 * 180.02562 * 8 6 5 11 11 H 1.48498 * 109.46927 * 59.99717 * 10 8 6 12 12 H 1.48496 * 109.47287 * 179.97438 * 10 8 6 13 13 H 1.48501 * 109.47040 * 299.99940 * 10 8 6 14 14 C 1.34777 * 120.00264 * 89.99354 * 4 3 2 15 15 O 1.21283 * 119.99750 * 180.02562 * 14 4 3 16 16 C 1.50702 * 119.99928 * 0.28128 * 14 4 3 17 17 H 1.09000 * 109.38226 * 334.71828 * 16 14 4 18 18 C 1.52633 * 109.37960 * 214.93487 * 16 14 4 19 19 S 1.81178 * 109.98972 * 172.98797 * 18 16 14 20 20 C 1.81171 * 103.31490 * 62.61523 * 19 18 16 21 21 C 1.52640 * 109.99399 * 297.38876 * 20 19 18 22 22 S 1.81171 * 109.38274 * 94.50828 * 16 14 4 23 23 H 1.07995 * 119.99516 * 359.97438 * 1 2 3 24 24 H 1.07992 * 119.99585 * 180.02562 * 1 2 3 25 25 H 1.07999 * 120.00412 * 180.02562 * 2 1 3 26 26 H 1.08994 * 109.47456 * 5.00330 * 3 2 1 27 27 H 1.09001 * 109.47250 * 244.99774 * 3 2 1 28 28 H 1.09001 * 109.47567 * 29.99407 * 5 4 3 29 29 H 1.09005 * 109.47076 * 149.99913 * 5 4 3 30 30 H 0.96991 * 119.99957 * 180.02562 * 9 8 6 31 31 H 1.09002 * 109.38793 * 293.14612 * 18 16 14 32 32 H 1.09004 * 109.38540 * 52.83350 * 18 16 14 33 33 H 1.09009 * 109.38471 * 57.54270 * 20 19 18 34 34 H 1.08994 * 109.38911 * 177.32925 * 20 19 18 35 35 H 1.08997 * 109.38689 * 187.01158 * 21 20 19 36 36 H 1.09002 * 109.38259 * 306.68922 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9939 1.3319 1.1314 5 6 2.5589 1.8649 2.4248 6 6 2.8443 3.3436 2.4804 7 1 3.3034 3.8371 1.6365 8 6 2.5194 4.0665 3.6086 9 7 1.9608 3.4656 4.6365 10 14 2.8725 5.8996 3.6772 11 1 2.1358 6.5867 2.5862 12 1 2.4317 6.4399 4.9883 13 1 4.3302 6.1294 3.5114 14 6 4.2498 0.8662 0.9824 15 8 5.0197 0.8880 1.9192 16 6 4.6991 0.3236 -0.3498 17 1 3.8318 -0.0298 -0.9076 18 6 5.6640 -0.8373 -0.1245 19 16 6.0540 -1.6341 -1.7043 20 6 6.8747 -0.3197 -2.6431 21 6 5.9098 0.8413 -2.8683 22 16 5.5225 1.6372 -1.2873 23 1 -0.5399 0.9353 0.0004 24 1 -0.5399 -0.9353 0.0004 25 1 1.8501 -0.9353 -0.0004 26 1 1.3586 2.1316 0.0896 27 1 2.6213 1.4027 -0.9314 28 1 1.4888 1.6967 2.5459 29 1 3.0990 1.3603 3.2260 30 1 1.7319 3.9742 5.4300 31 1 6.5821 -0.4622 0.3278 32 1 5.2044 -1.5653 0.5440 33 1 7.7429 0.0342 -2.0869 34 1 7.1980 -0.7116 -3.6074 35 1 6.3693 1.5692 -3.5369 36 1 4.9917 0.4662 -3.3206 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000816803267.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:07 Heat of formation + Delta-G solvation = -30.962456 kcal Electronic energy + Delta-G solvation = -18847.898989 eV Core-core repulsion = 15970.387081 eV Total energy + Delta-G solvation = -2877.511909 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 287.075 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.98953 -37.39696 -35.35188 -34.74559 -33.74257 -33.45687 -29.77503 -27.06331 -26.40062 -24.85191 -24.07881 -21.28943 -20.26990 -18.89665 -18.55452 -18.11135 -17.21713 -17.08614 -16.41065 -16.30331 -15.90142 -15.50825 -15.22733 -14.71913 -14.64155 -14.42018 -14.19515 -14.01210 -13.83182 -13.36642 -13.07229 -12.93592 -12.82555 -12.60135 -12.28649 -12.24496 -12.22612 -11.72490 -11.33936 -10.96279 -10.65822 -10.60815 -10.36611 -9.57707 -9.12209 -8.81778 -8.24298 -6.38548 0.08291 0.48366 1.17640 1.28584 1.35733 1.39726 1.42096 1.47218 1.89104 2.27791 2.41606 3.05741 3.24000 3.47987 3.63279 3.73339 4.02572 4.05432 4.15966 4.18765 4.34986 4.36584 4.58900 4.61647 4.76132 4.80425 4.95112 5.02429 5.17128 5.45517 5.67246 5.72004 5.89271 6.02768 6.55588 6.69934 7.16888 7.34354 8.82990 Molecular weight = 287.08amu Principal moments of inertia in cm(-1) A = 0.018893 B = 0.005337 C = 0.004758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1481.657571 B = 5245.092612 C = 5883.940283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.190 4.190 3 C 0.130 3.870 4 N -0.585 5.585 5 C 0.265 3.735 6 C -0.543 4.543 7 H 0.051 0.949 8 C 0.012 3.988 9 N -0.926 5.926 10 Si 0.964 3.036 11 H -0.260 1.260 12 H -0.276 1.276 13 H -0.280 1.280 14 C 0.523 3.477 15 O -0.577 6.577 16 C -0.068 4.068 17 H 0.136 0.864 18 C -0.070 4.070 19 S -0.240 6.240 20 C -0.087 4.087 21 C -0.079 4.079 22 S -0.254 6.254 23 H 0.100 0.900 24 H 0.120 0.880 25 H 0.114 0.886 26 H 0.082 0.918 27 H 0.099 0.901 28 H 0.027 0.973 29 H 0.000 1.000 30 H 0.268 0.732 31 H 0.088 0.912 32 H 0.111 0.889 33 H 0.096 0.904 34 H 0.152 0.848 35 H 0.148 0.852 36 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.437 -8.594 -19.357 21.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.209 4.209 3 C 0.008 3.992 4 N -0.314 5.314 5 C 0.144 3.856 6 C -0.582 4.582 7 H 0.069 0.931 8 C -0.188 4.188 9 N -0.565 5.565 10 Si 0.788 3.212 11 H -0.184 1.184 12 H -0.201 1.201 13 H -0.205 1.205 14 C 0.307 3.693 15 O -0.458 6.458 16 C -0.201 4.201 17 H 0.154 0.846 18 C -0.221 4.221 19 S -0.012 6.012 20 C -0.237 4.237 21 C -0.229 4.229 22 S -0.027 6.027 23 H 0.119 0.881 24 H 0.138 0.862 25 H 0.132 0.868 26 H 0.100 0.900 27 H 0.117 0.883 28 H 0.045 0.955 29 H 0.018 0.982 30 H 0.077 0.923 31 H 0.107 0.893 32 H 0.130 0.870 33 H 0.114 0.886 34 H 0.169 0.831 35 H 0.165 0.835 36 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 3.761 -8.557 -18.709 20.914 hybrid contribution 0.051 0.940 0.916 1.313 sum 3.812 -7.617 -17.793 19.727 Atomic orbital electron populations 1.24079 0.95337 1.03104 0.97325 1.23298 0.96988 0.97862 1.02783 1.20879 0.92625 0.96818 0.88841 1.48138 1.11192 1.58673 1.13441 1.18768 0.94165 0.92789 0.79863 1.21622 1.40836 0.94295 1.01431 0.93068 1.25802 0.94563 1.03609 0.94778 1.70035 1.42640 1.38157 1.05714 0.85518 0.78454 0.79192 0.77988 1.18429 1.20116 1.20522 1.20070 0.82116 0.78163 0.88931 1.90662 1.53901 1.57821 1.43401 1.23404 1.02318 0.97519 0.96880 0.84610 1.23267 1.01821 0.98602 0.98389 1.86659 1.77244 1.23354 1.13937 1.23698 0.99970 0.95526 1.04495 1.23784 1.03728 1.00849 0.94512 1.87623 1.76984 1.21274 1.16853 0.88129 0.86213 0.86825 0.89995 0.88313 0.95538 0.98214 0.92330 0.89292 0.87043 0.88573 0.83063 0.83478 0.86893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.79 14.32 67.77 0.97 -2.82 16 2 C -0.19 -5.14 9.41 25.64 0.24 -4.90 16 3 C 0.13 4.25 5.45 85.63 0.47 4.72 16 4 N -0.58 -25.43 2.44 -830.49 -2.03 -27.45 16 5 C 0.27 14.49 5.16 85.63 0.44 14.94 16 6 C -0.54 -31.81 9.39 25.60 0.24 -31.57 16 7 H 0.05 3.00 7.81 -2.91 -0.02 2.98 16 8 C 0.01 0.69 5.46 84.66 0.46 1.15 16 9 N -0.93 -56.29 13.29 21.45 0.28 -56.00 16 10 Si 0.96 45.52 29.54 68.60 2.03 47.55 16 11 H -0.26 -11.51 7.11 99.48 0.71 -10.80 16 12 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16 13 H -0.28 -13.31 7.11 99.48 0.71 -12.60 16 14 C 0.52 22.39 6.65 87.66 0.58 22.98 16 15 O -0.58 -30.51 15.98 -3.04 -0.05 -30.56 16 16 C -0.07 -2.06 1.92 29.73 0.06 -2.01 16 17 H 0.14 3.51 5.93 -2.39 -0.01 3.50 16 18 C -0.07 -1.96 5.08 71.86 0.37 -1.59 16 19 S -0.24 -4.94 22.05 -56.49 -1.25 -6.18 16 20 C -0.09 -1.26 6.25 71.86 0.45 -0.81 16 21 C -0.08 -1.21 6.26 71.86 0.45 -0.76 16 22 S -0.25 -7.17 21.24 -56.49 -1.20 -8.37 16 23 H 0.10 2.36 7.84 -2.91 -0.02 2.34 16 24 H 0.12 2.26 8.06 -2.91 -0.02 2.23 16 25 H 0.11 2.85 7.99 -2.91 -0.02 2.83 16 26 H 0.08 2.81 7.72 -2.39 -0.02 2.79 16 27 H 0.10 2.75 6.30 -2.39 -0.02 2.73 16 28 H 0.03 1.47 8.07 -2.39 -0.02 1.45 16 29 H 0.00 -0.02 7.42 -2.38 -0.02 -0.03 16 30 H 0.27 15.28 8.31 -92.72 -0.77 14.51 16 31 H 0.09 2.79 8.06 -2.39 -0.02 2.77 16 32 H 0.11 3.17 8.13 -2.39 -0.02 3.15 16 33 H 0.10 1.52 8.14 -2.39 -0.02 1.51 16 34 H 0.15 1.23 8.14 -2.40 -0.02 1.21 16 35 H 0.15 1.52 8.14 -2.40 -0.02 1.50 16 36 H 0.11 1.46 8.14 -2.39 -0.02 1.44 16 Total: -1.00 -73.55 325.41 3.57 -69.97 By element: Atomic # 1 Polarization: 10.64 SS G_CDS: 1.06 Total: 11.70 kcal Atomic # 6 Polarization: -5.39 SS G_CDS: 4.73 Total: -0.66 kcal Atomic # 7 Polarization: -81.71 SS G_CDS: -1.74 Total: -83.45 kcal Atomic # 8 Polarization: -30.51 SS G_CDS: -0.05 Total: -30.56 kcal Atomic # 14 Polarization: 45.52 SS G_CDS: 2.03 Total: 47.55 kcal Atomic # 16 Polarization: -12.10 SS G_CDS: -2.45 Total: -14.55 kcal Total: -73.55 3.57 -69.97 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000816803267.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.011 kcal (2) G-P(sol) polarization free energy of solvation -73.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.973 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds